Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	R	R	R	G	V	T	L	T	K	A	L	L	T	A	V	C	M	L	A	A	P	L	T	Q	A	I	S	V	G	N	L	T	F	S	L	P	S	E	T	D	F	V	S	K	R	V	V	N	N	N	K	S	A	R	I	Y	R	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?																			?	?	?						?						?	?	?	?	?													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	I	S	A	I	D	S	P	G	S	S	E	L	R	T	R	P	V	D	G	E	L	L	F	A	P	R	Q	L	A	L	Q	A	G	E	S	E	Y	F	K	F	Y	Y	H	G	P	R	D	N	R	E	R	Y	Y	R	V	S	F	R	E
Secondary structure
SS confidence
Disorder									?	?	?	?	?	?	?	?	?	?		?													?	?																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	P	T	R	N	H	T	R	R	S	P	T	G	G	V	V	S	T	E	P	V	V	V	M	D	T	I	L	V	V	R	P	R	Q	V	Q	F	K	W	S	F	D	K	V	T	G	T	V	S	N	T	G	N	T	W	F	K	L	L	I
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?	?	?	?	?	?	?									?																			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Sequence		K	P	G	C	D	S	T	E	E	E	G	D	A	W	Y	L	R	P	G	D	V	V	H	Q	P	E	L	R	Q	P	G	N	H	Y	L	V	Y	N	D	K	F	I	K	I	S	D	S	C	P	A	K	P	P	S	A	D
Secondary structure
SS confidence
Disorder			?		?	?	?	?	?																?	?	?	?	?	?	?																?	?		?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1qpx chain A Region: 27 - 231 Aligned: 182 Modelled: 189 Confidence: 100.0% Identity: 20% PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers Phyre2 PDB 1z9s chain A Region: 23 - 208 Aligned: 163 Modelled: 184 Confidence: 100.0% Identity: 15% PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex Phyre2 PDB 2co7 chain B Region: 22 - 212 Aligned: 172 Modelled: 172 Confidence: 100.0% Identity: 17% PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) Phyre2 PDB 1qun chain A Region: 27 - 205 Aligned: 164 Modelled: 174 Confidence: 100.0% Identity: 12% PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli Phyre2 PDB 3q48 chain B Region: 30 - 209 Aligned: 155 Modelled: 160 Confidence: 100.0% Identity: 19% PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone Phyre2 PDB 1l4i chain A Region: 27 - 215 Aligned: 163 Modelled: 189 Confidence: 100.0% Identity: 15% PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae Phyre2 PDB 3f6i chain B Region: 27 - 208 Aligned: 163 Modelled: 174 Confidence: 99.9% Identity: 15% PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee Phyre2 PDB 1p5v chain A domain 1 Region: 21 - 155 Aligned: 110 Modelled: 118 Confidence: 99.9% Identity: 17% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 2co7 chain B domain 1 Region: 22 - 155 Aligned: 115 Modelled: 125 Confidence: 99.9% Identity: 20% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 2j2z chain A domain 1 Region: 27 - 158 Aligned: 118 Modelled: 132 Confidence: 99.9% Identity: 19% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 3bwu chain C domain 1 Region: 27 - 155 Aligned: 112 Modelled: 129 Confidence: 99.9% Identity: 13% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 1l4i chain A domain 1 Region: 27 - 155 Aligned: 109 Modelled: 129 Confidence: 99.9% Identity: 17% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 2qsv chain A Region: 26 - 206 Aligned: 166 Modelled: 166 Confidence: 97.9% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83 Phyre2 PDB 1row chain A Region: 28 - 127 Aligned: 85 Modelled: 86 Confidence: 97.3% Identity: 14% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 1m1s chain A Region: 28 - 146 Aligned: 105 Modelled: 105 Confidence: 97.0% Identity: 10% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 2j2z chain A domain 2 Region: 153 - 231 Aligned: 79 Modelled: 79 Confidence: 97.0% Identity: 19% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 3qis chain A Region: 27 - 103 Aligned: 69 Modelled: 77 Confidence: 96.3% Identity: 13% PDB header:hydrolase/protein binding Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: recognition of the f&h motif by the lowe syndrome protein ocrl Phyre2 PDB 3o0l chain B Region: 22 - 120 Aligned: 88 Modelled: 99 Confidence: 96.1% Identity: 10% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution Phyre2 PDB 1grw chain A Region: 25 - 152 Aligned: 113 Modelled: 114 Confidence: 95.7% Identity: 12% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 1z9o chain B Region: 28 - 125 Aligned: 84 Modelled: 84 Confidence: 95.6% Identity: 8% PDB header:protein binding/lipid binding protein Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif Phyre2 1 c1qpxA_ 2 c1z9sA_ 3 c2co7B_ 4 c1qunA_ 5 c3q48B_ 6 c1l4iA_ 7 c3f6iB_ 8 d1p5va1 9 d2co7b1 10 d2j2za1 11 d3bwuc1 12 d1l4ia1 13 c2qsvA_ 14 d1rowa_ 15 d1m1sa_ 16 d2j2za2 17 c3qisA_ 18 c3o0lB_ 19 d1grwa_ 20 c1z9oB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1qpxA_ 100.0 20 PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers 2 c1z9sA_ 100.0 15 PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex 3 c2co7B_ 100.0 17 PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) 4 c1qunA_ 100.0 12 PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli 5 c3q48B_ 100.0 19 PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone 6 c1l4iA_ 100.0 15 PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae 7 c3f6iB_ 99.9 15 PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee 8 d1p5va1 99.9 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 9 d2co7b1 99.9 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 10 d2j2za1 99.9 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 11 d3bwuc1 99.9 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 12 d1l4ia1 99.9 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 13 c2qsvA_ 97.9 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83 14 d1rowa_ 97.3 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 15 d1m1sa_ 97.0 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 16 d2j2za2 97.0 19 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 17 c3qisA_ 96.3 13 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: recognition of the f&h motif by the lowe syndrome protein ocrl 18 c3o0lB_ 96.1 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution 19 d1grwa_ 95.7 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 20 c1z9oB_ 95.6 8 PDB header:protein binding/lipid binding protein Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif 21 c2e6jA_ not modelled 95.4 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydin protein; PDBTitle: solution structure of the c-terminal papd-like domain from2 human hydin protein 22 d1mspa_ not modelled 95.4 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 23 d1wica_ not modelled 94.9 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 24 c2ys4A_ not modelled 94.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydrocephalus-inducing protein homolog; PDBTitle: solution structure of the n-terminal papd-like domain of2 hydin protein from human 25 d3bwuc2 not modelled 94.8 10 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 26 c3qbtH_ not modelled 94.4 11 PDB header:protein transport/hydrolase Chain: H: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: crystal structure of ocrl1 540-678 in complex with rab8a:gppnhp 27 d1p5va2 not modelled 92.3 10 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 28 d1w8oa1 not modelled 91.4 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 29 d2co7b2 not modelled 89.9 13 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 30 c2jwyA_ not modelled 89.8 9 PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yaji; PDBTitle: solution nmr structure of uncharacterized lipoprotein yaji from2 escherichia coli. northeast structural genomics target er540 31 d2vzsa2 not modelled 89.1 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 32 c1l9mB_ not modelled 88.9 12 PDB header:transferase Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3; PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation 33 d1l4ia2 not modelled 85.4 16 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 34 c3cfuA_ not modelled 80.9 12 PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yjha; PDBTitle: crystal structure of the yjha protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr562 35 d1exha_ not modelled 79.4 12 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family II 36 c3ac0B_ not modelled 76.9 16 PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose 37 c2r39A_ not modelled 75.6 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fixg-related protein; PDBTitle: crystal structure of fixg-related protein from vibrio parahaemolyticus 38 c2kl6A_ not modelled 72.8 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the cardb domain of pf1109 from2 pyrococcus furiosus. northeast structural genomics3 consortium target pfr193a 39 c2x41A_ not modelled 72.7 23 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose 40 c3isyA_ not modelled 59.7 15 PDB header:protein binding Chain: A: PDB Molecule:intracellular proteinase inhibitor; PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution 41 c2je8B_ not modelled 58.9 11 PDB header:hydrolase Chain: B: PDB Molecule:beta-mannosidase; PDBTitle: structure of a beta-mannosidase from bacteroides2 thetaiotaomicron 42 d1yq2a1 not modelled 53.5 7 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 43 c3jt0B_ not modelled 47.9 13 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of the c-terminal fragment (426-558)2 lamin-b1 from homo sapiens, northeast structural genomics3 consortium target hr5546a 44 d1ex0a2 not modelled 44.9 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 45 c3rgbA_ not modelled 44.1 14 PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase subunit b2; PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath) 46 d1vjja2 not modelled 43.7 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 47 d1ejxb_ not modelled 43.3 12 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 48 c1yewI_ not modelled 42.2 14 PDB header:oxidoreductase, membrane protein Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit; PDBTitle: crystal structure of particulate methane monooxygenase 49 d4ubpb_ not modelled 40.1 12 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 50 c2lllA_ not modelled 39.5 16 PDB header:structural protein Chain: A: PDB Molecule:lamin-b2; PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a 51 d1ufga_ not modelled 38.8 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 52 d1xvsa_ not modelled 38.0 6 Fold:Immunoglobulin-like beta-sandwich Superfamily:ApaG-like Family:ApaG-like 53 d1g0da2 not modelled 37.2 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 54 d1v10a2 not modelled 34.3 15 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 55 c3nrfA_ not modelled 32.3 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:apag protein; PDBTitle: crystal structure of an apag protein (pa1934) from pseudomonas2 aeruginosa pao1 at 1.50 a resolution 56 d1e9ya1 not modelled 32.1 15 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 57 c2kutA_ not modelled 31.4 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of gmr58a from geobacter metallireducens.2 northeast structural genomics consortium target gmr58a 58 c3ndyG_ not modelled 30.9 13 PDB header:hydrolase Chain: G: PDB Molecule:endoglucanase d; PDBTitle: the structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans 59 c3qgaD_ not modelled 30.1 13 PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae 60 c2f1eA_ not modelled 30.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein apag; PDBTitle: solution structure of apag protein 61 d3pmga4 not modelled 29.9 9 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 62 c2l0dA_ not modelled 29.7 14 PDB header:cell adhesion Chain: A: PDB Molecule:cell surface protein; PDBTitle: solution nmr structure of putative cell surface protein ma_4588 (272-2 376 domain) from methanosarcina acetivorans, northeast structural3 genomics consortium target mvr254a 63 c2x3bB_ not modelled 26.8 13 PDB header:hydrolase Chain: B: PDB Molecule:toxic extracellular endopeptidase; PDBTitle: asap1 inactive mutant e294a, an extracellular toxic zinc2 metalloendopeptidase 64 d1xq4a_ not modelled 26.2 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:ApaG-like Family:ApaG-like 65 d2q3za2 not modelled 25.2 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 66 c3rfrI_ not modelled 24.7 12 PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m 67 d1kyaa2 not modelled 24.2 11 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 68 c1e9zA_ not modelled 22.0 15 PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease 69 d2cj3a1 not modelled 20.4 25 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 70 c3se6A_ not modelled 20.4 10 PDB header:hydrolase Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 2; PDBTitle: crystal structure of the human endoplasmic reticulum aminopeptidase 2 71 d1bqka_ not modelled 19.7 26 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 72 d1hfua2 not modelled 19.7 9 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 73 c3cc1B_ not modelled 18.3 10 PDB header:hydrolase Chain: B: PDB Molecule:putative alpha-n-acetylgalactosaminidase; PDBTitle: crystal structure of a putative alpha-n-acetylgalactosaminidase2 (bh1870) from bacillus halodurans c-125 at 2.00 a resolution 74 c1f13A_ not modelled 18.3 12 PDB header:coagulation factor Chain: A: PDB Molecule:cellular coagulation factor xiii zymogen; PDBTitle: recombinant human cellular coagulation factor xiii 75 d1tzaa_ not modelled 17.1 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:ApaG-like Family:ApaG-like 76 d1plaa_ not modelled 17.0 36 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 77 d1ifra_ not modelled 16.2 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 78 c2qv2A_ not modelled 16.0 14 PDB header:hydrolase Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: a role of the lowe syndrome protein ocrl in early steps of2 the endocytic pathway 79 d1ivta_ not modelled 15.5 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 80 d1hmja_ not modelled 14.7 16 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 81 d1bxua_ not modelled 14.2 26 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 82 d1adwa_ not modelled 14.0 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 83 d1plca_ not modelled 13.2 33 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 84 c3rx9A_ not modelled 13.2 18 PDB header:lipid binding protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: 3d structure of scin from an escherichia coli patotype 85 d1pmya_ not modelled 12.9 26 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 86 d1paza_ not modelled 12.8 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 87 c3ppsD_ not modelled 12.5 12 PDB header:oxidoreductase Chain: D: PDB Molecule:laccase; PDBTitle: crystal structure of an ascomycete fungal laccase from thielavia2 arenaria 88 d1bypa_ not modelled 12.1 33 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 89 d9pcya_ not modelled 12.1 30 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 90 d1pcsa_ not modelled 12.0 32 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 91 d2q5ba1 not modelled 11.9 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 92 c2zoeA_ not modelled 11.2 13 PDB header:toxin Chain: A: PDB Molecule:hemagglutinin components ha3; PDBTitle: ha3 subcomponent of clostridium botulinum type c progenitor2 toxin, complex with n-acetylneuramic acid 93 d7pcya_ not modelled 10.8 37 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 94 d1qbaa2 not modelled 10.2 10 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Bacterial chitobiase, n-terminal domain 95 c3qnfA_ not modelled 10.1 13 PDB header:hydrolase Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 1; PDBTitle: crystal structure of the open state of human endoplasmic reticulum2 aminopeptidase 1 erap1 96 d2jxma1 not modelled 9.8 22 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 97 c2zv4O_ not modelled 9.4 15 PDB header:structural protein Chain: O: PDB Molecule:major vault protein; PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution 98 c2xdtA_ not modelled 9.3 14 PDB header:hydrolase Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 1; PDBTitle: crystal structure of the soluble domain of human2 endoplasmic reticulum aminopeptidase 1 erap1 99 d1ag6a_ not modelled 8.9 33 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0