Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	R	R	R	F	I	K	G	S	M	A	M	A	A	V	C	G	T	S	G	I	A	S	L	F	S	Q	A	A	F	A	A	D	S	D	I	A	D	G	Q	T	Q	R	F	D	F	S	I	L	Q	S	M	A	H	D	L	A	Q	T
Secondary structure
SS confidence
Disorder		?	?							?	?	?	?					?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	W	R	G	A	P	R	P	L	P	D	T	L	A	T	M	T	P	Q	A	Y	N	S	I	Q	Y	D	A	E	K	S	L	W	H	N	V	E	N	R	Q	L	D	A	Q	F	F	H	M	G	M	G	F	R	R	R	V	R	M	F	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																						?				?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	D	P	A	T	H	L	A	R	E	I	H	F	R	P	E	L	F	K	Y	N	D	A	G	V	D	T	K	Q	L	E	G	Q	S	D	L	G	F	A	G	F	R	V	F	K	A	P	E	L	A	R	R	D	V	V	S	F	L	G	A
Secondary structure
SS confidence
Disorder				?		?	?		?						?					?				?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	Y	F	R	A	V	D	D	T	Y	Q	Y	G	L	S	A	R	G	L	A	I	D	T	Y	T	D	S	K	E	E	F	P	D	F	T	A	F	W	F	D	T	V	K	P	G	A	T	T	F	T	V	Y	A	L	L	D	S	A	S	I
Secondary structure
SS confidence
Disorder											?	?											?	?		?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		T	G	A	Y	K	F	T	I	H	C	E	K	S	Q	V	I	M	D	V	E	N	H	L	Y	A	R	K	D	I	K	Q	L	G	I	A	P	M	T	S	M	F	S	C	G	T	N	E	R	R	M	C	D	T	I	H	P	Q	I	H	D
Secondary structure
SS confidence
Disorder																																															?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		S	D	R	L	S	M	W	R	G	N	G	E	W	I	C	R	P	L	N	N	P	Q	K	L	Q	F	N	A	Y	T	D	N	N	P	K	G	F	G	L	L	Q	L	D	R	D	F	S	H	Y	Q	D	I	M	G	W	Y	N	K	R	P
Secondary structure
SS confidence
Disorder																									?							?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		S	L	W	V	E	P	R	N	K	W	G	K	G	T	I	G	L	M	E	I	P	T	T	G	E	T	L	D	N	I	V	C	F	W	Q	P	E	K	A	V	K	A	G	D	E	F	A	F	Q	Y	R	L	Y	W	S	A	Q	P	P	V
Secondary structure
SS confidence
Disorder																																									?	?	?	?	?														?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		H	C	P	L	A	R	V	M	A	T	R	T	G	M	G	G	F	S	E	G	W	A	P	G	E	H	Y	P	E	K	W	A	R	R	F	A	V	D	F	V	G	G	D	L	K	A	A	A	P	K	G	I	E	P	V	I	T	L	S	S
Secondary structure
SS confidence
Disorder				?									?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		G	E	A	K	Q	I	E	I	L	Y	I	E	P	I	D	G	Y	R	I	Q	F	D	W	Y	P	T	S	D	S	T	D	P	V	D	M	R	M	Y	L	R	C	Q	G	D	A	I	S	E	T	W	L	Y	Q	Y	F	P	P	A	P	D
Secondary structure
SS confidence
Disorder																													?																																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.
Sequence		K	R	Q	Y	V	D	D	R	V	M	S
Secondary structure
SS confidence
Disorder							?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1txk chain A Region: 45 - 539 Aligned: 480 Modelled: 495 Confidence: 100.0% Identity: 36% PDB header:biosynthetic protein Chain: A: PDB Molecule:glucans biosynthesis protein g; PDBTitle: crystal structure of escherichia coli opgg Phyre2 PDB 1txk chain A domain 2 Region: 45 - 422 Aligned: 367 Modelled: 378 Confidence: 100.0% Identity: 41% Fold: Supersandwich Superfamily: Galactose mutarotase-like Family: MdoG-like Phyre2 PDB 1txk chain A domain 1 Region: 422 - 540 Aligned: 113 Modelled: 119 Confidence: 100.0% Identity: 24% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: E-set domains of sugar-utilizing enzymes Phyre2 PDB 2e76 chain D Region: 1 - 45 Aligned: 45 Modelled: 45 Confidence: 53.0% Identity: 11% PDB header:photosynthesis Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus Phyre2 PDB 2r5o chain A Region: 350 - 532 Aligned: 155 Modelled: 179 Confidence: 44.6% Identity: 14% PDB header:transport protein Chain: A: PDB Molecule:putative atp binding component of abc- PDBTitle: crystal structure of the c-terminal domain of wzt Phyre2 PDB 1nkr chain A domain 1 Region: 358 - 366 Aligned: 9 Modelled: 9 Confidence: 21.4% Identity: 44% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: I set domains Phyre2 PDB 2d7n chain A domain 1 Region: 454 - 527 Aligned: 61 Modelled: 74 Confidence: 20.6% Identity: 15% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: Filamin repeat (rod domain) Phyre2 PDB 2jna chain A domain 1 Region: 178 - 201 Aligned: 23 Modelled: 24 Confidence: 20.4% Identity: 17% Fold: Dodecin subunit-like Superfamily: YdgH-like Family: YdgH-like Phyre2 PDB 2noc chain A domain 1 Region: 178 - 191 Aligned: 14 Modelled: 14 Confidence: 19.6% Identity: 14% Fold: Dodecin subunit-like Superfamily: YdgH-like Family: YdgH-like Phyre2 PDB 1p84 chain E Region: 1 - 23 Aligned: 23 Modelled: 23 Confidence: 18.5% Identity: 9% PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: hdbt inhibited yeast cytochrome bc1 complex Phyre2 PDB 1se9 chain A Region: 218 - 262 Aligned: 44 Modelled: 45 Confidence: 17.8% Identity: 14% PDB header:plant protein Chain: A: PDB Molecule:ubiquitin family; PDBTitle: structure of at3g01050, a ubiquitin-fold protein from2 arabidopsis thaliana Phyre2 PDB 1se9 chain A Region: 218 - 262 Aligned: 44 Modelled: 45 Confidence: 17.8% Identity: 14% Fold: beta-Grasp (ubiquitin-like) Superfamily: Ubiquitin-like Family: Ubiquitin-related Phyre2 PDB 3on7 chain C Region: 299 - 328 Aligned: 29 Modelled: 30 Confidence: 17.4% Identity: 17% PDB header:oxidoreductase Chain: C: PDB Molecule:oxidoreductase, iron/ascorbate family; PDBTitle: crystal structure of a putative oxygenase (so_2589) from shewanella2 oneidensis at 2.20 a resolution Phyre2 PDB 3rhf chain B Region: 193 - 232 Aligned: 38 Modelled: 39 Confidence: 17.2% Identity: 13% PDB header:transferase Chain: B: PDB Molecule:putative polyphosphate kinase 2 family protein; PDBTitle: crystal structure of polyphosphate kinase 2 from arthrobacter2 aurescens tc1 Phyre2 PDB 2l6m chain A Region: 386 - 393 Aligned: 8 Modelled: 8 Confidence: 16.5% Identity: 38% PDB header:hydrolase Chain: A: PDB Molecule:protein dicer; PDBTitle: structure of c-terminal dsrbd of the fission yeast dicer (dcr1) Phyre2 PDB 1ois chain A Region: 529 - 545 Aligned: 17 Modelled: 17 Confidence: 15.6% Identity: 24% Fold: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Superfamily: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Family: Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Phyre2 PDB 1jmx chain A domain 5 Region: 435 - 530 Aligned: 85 Modelled: 96 Confidence: 15.3% Identity: 13% Fold: Streptavidin-like Superfamily: Quinohemoprotein amine dehydrogenase A chain, domain 3 Family: Quinohemoprotein amine dehydrogenase A chain, domain 3 Phyre2 PDB 2r3a chain A Region: 316 - 339 Aligned: 24 Modelled: 24 Confidence: 15.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase suv39h2; PDBTitle: methyltransferase domain of human suppressor of variegation2 3-9 homolog 2 Phyre2 PDB 2dl2 chain A domain 1 Region: 357 - 366 Aligned: 10 Modelled: 10 Confidence: 15.0% Identity: 40% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: I set domains Phyre2 PDB 1xbw chain A Region: 156 - 177 Aligned: 22 Modelled: 22 Confidence: 13.7% Identity: 32% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: PG130-like Phyre2 1 c1txkA_ 2 d1txka2 3 d1txka1 4 c2e76D_ 5 c2r5oA_ 6 d1nkra1 7 d2d7na1 8 d2jnaa1 9 d2noca1 10 c1p84E_ 11 c1se9A_ 12 d1se9a_ 13 c3on7C_ 14 c3rhfB_ 15 c2l6mA_ 16 d1oisa_ 17 d1jmxa5 18 c2r3aA_ 19 d2dl2a1 20 d1xbwa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1txkA_ 100.0 36 PDB header:biosynthetic protein Chain: A: PDB Molecule:glucans biosynthesis protein g; PDBTitle: crystal structure of escherichia coli opgg 2 d1txka2 100.0 41 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:MdoG-like 3 d1txka1 100.0 24 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 4 c2e76D_ 53.0 11 PDB header:photosynthesis Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 5 c2r5oA_ 44.6 14 PDB header:transport protein Chain: A: PDB Molecule:putative atp binding component of abc- PDBTitle: crystal structure of the c-terminal domain of wzt 6 d1nkra1 21.4 44 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 7 d2d7na1 20.6 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 8 d2jnaa1 20.4 17 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 9 d2noca1 19.6 14 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 10 c1p84E_ 18.5 9 PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 11 c1se9A_ 17.8 14 PDB header:plant protein Chain: A: PDB Molecule:ubiquitin family; PDBTitle: structure of at3g01050, a ubiquitin-fold protein from2 arabidopsis thaliana 12 d1se9a_ 17.8 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 13 c3on7C_ 17.4 17 PDB header:oxidoreductase Chain: C: PDB Molecule:oxidoreductase, iron/ascorbate family; PDBTitle: crystal structure of a putative oxygenase (so_2589) from shewanella2 oneidensis at 2.20 a resolution 14 c3rhfB_ 17.2 13 PDB header:transferase Chain: B: PDB Molecule:putative polyphosphate kinase 2 family protein; PDBTitle: crystal structure of polyphosphate kinase 2 from arthrobacter2 aurescens tc1 15 c2l6mA_ 16.5 38 PDB header:hydrolase Chain: A: PDB Molecule:protein dicer; PDBTitle: structure of c-terminal dsrbd of the fission yeast dicer (dcr1) 16 d1oisa_ 15.6 24 Fold:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Superfamily:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Family:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 17 d1jmxa5 15.3 13 Fold:Streptavidin-like Superfamily:Quinohemoprotein amine dehydrogenase A chain, domain 3 Family:Quinohemoprotein amine dehydrogenase A chain, domain 3 18 c2r3aA_ 15.0 17 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase suv39h2; PDBTitle: methyltransferase domain of human suppressor of variegation2 3-9 homolog 2 19 d2dl2a1 15.0 40 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 20 d1xbwa_ 13.7 32 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:PG130-like 21 c3r0eC_ not modelled 12.8 16 PDB header:sugar binding protein Chain: C: PDB Molecule:lectin; PDBTitle: structure of remusatia vivipara lectin 22 c3ooxA_ not modelled 12.1 21 PDB header:oxidoreductase Chain: A: PDB Molecule:putative 2og-fe(ii) oxygenase family protein; PDBTitle: crystal structure of a putative 2og-fe(ii) oxygenase family protein2 (cc_0200) from caulobacter crescentus at 1.44 a resolution 23 d1dmla1 not modelled 11.9 26 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 24 c3exmA_ not modelled 11.7 24 PDB header:hydrolase Chain: A: PDB Molecule:phosphatase sc4828; PDBTitle: crystal structure of the phosphatase sc4828 with the non-hydrolyzable2 nucleotide gpcp 25 c2l3bA_ not modelled 11.6 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein found in conjugate transposon; PDBTitle: solution nmr structure of the bt_0084 lipoprotein from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr376 26 d1k4ta3 not modelled 11.4 24 Fold:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Superfamily:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Family:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 27 c2i1jA_ not modelled 11.4 35 PDB header:cell adhesion, membrane protein Chain: A: PDB Molecule:moesin; PDBTitle: moesin from spodoptera frugiperda at 2.1 angstroms resolution 28 c2fynO_ not modelled 11.3 17 PDB header:oxidoreductase Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 29 c2l7qA_ not modelled 11.3 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein found in conjugate transposon; PDBTitle: solution nmr structure of conjugate transposon protein bvu_1572(27-2 141) from bacteroides vulgatus, northeast structural genomics3 consortium target bvr155 30 d1ee8a2 not modelled 11.3 22 Fold:N-terminal domain of MutM-like DNA repair proteins Superfamily:N-terminal domain of MutM-like DNA repair proteins Family:N-terminal domain of MutM-like DNA repair proteins 31 d1csya_ not modelled 11.0 18 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 32 c2fyuE_ not modelled 10.8 22 PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit, PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor 33 d1qcsa1 not modelled 10.2 43 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 34 c3phuA_ not modelled 10.2 9 PDB header:hydrolase Chain: A: PDB Molecule:rna-directed rna polymerase l; PDBTitle: otu domain of crimean congo hemorrhagic fever virus 35 d1ix2a_ not modelled 9.8 50 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Copper resistance protein C (CopC, PcoC) 36 d1ml9a_ not modelled 9.4 13 Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases 37 c2p8zS_ not modelled 9.3 56 PDB header:translation Chain: S: PDB Molecule:elongation factor tu-b; PDBTitle: fitted structure of adpr-eef2 in the 80s:adpr-2 eef2:gdpnp:sordarin cryo-em reconstruction 38 d1erna1 not modelled 9.2 34 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 39 d1h95a_ not modelled 9.2 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 40 d1e09a_ not modelled 9.1 23 Fold:TBP-like Superfamily:Bet v1-like Family:Pathogenesis-related protein 10 (PR10)-like 41 d1p1la_ not modelled 9.0 40 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 42 d1ja1a3 not modelled 9.0 44 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:NADPH-cytochrome p450 reductase-like 43 c3d3zA_ not modelled 8.9 27 PDB header:hydrolase Chain: A: PDB Molecule:actibind; PDBTitle: crystal structure of actibind a t2 rnase 44 c3o0lB_ not modelled 8.7 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution 45 c3camB_ not modelled 8.7 56 PDB header:gene regulation Chain: B: PDB Molecule:cold-shock domain family protein; PDBTitle: crystal structure of the cold shock domain protein from neisseria2 meningitidis 46 d1a8pa2 not modelled 8.6 44 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 47 d1fdra2 not modelled 8.5 33 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 48 c1a31A_ not modelled 8.4 24 PDB header:isomerase/dna Chain: A: PDB Molecule:protein (topoisomerase i); PDBTitle: human reconstituted dna topoisomerase i in covalent complex2 with a 22 base pair dna duplex 49 c1dmlG_ not modelled 8.4 26 PDB header:dna binding protein/transferase Chain: G: PDB Molecule:dna polymerase processivity factor; PDBTitle: crystal structure of herpes simplex ul42 bound to the c-2 terminus of hsv pol 50 d1dq3a3 not modelled 8.2 40 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 51 c3adyA_ not modelled 8.2 29 PDB header:proton transport Chain: A: PDB Molecule:dotd; PDBTitle: crystal structure of dotd from legionella 52 d1ef1a2 not modelled 8.2 35 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Third domain of FERM 53 c3nezA_ not modelled 8.1 22 PDB header:fluorescent protein Chain: A: PDB Molecule:mrojoa; PDBTitle: mrojoa 54 d1kr4a_ not modelled 7.9 10 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 55 d1b2pa_ not modelled 7.9 19 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 56 c1ckwA_ not modelled 7.8 12 PDB header:metal transport Chain: A: PDB Molecule:protein (cystic fibrosis transmembrane PDBTitle: cystic fibrosis transmembrane conductance regulator:2 solution structures of peptides based on the phe508 region,3 the most common site of disease-causing delta-f508 mutation 57 c1nh3A_ not modelled 7.8 24 PDB header:isomerase/dna Chain: A: PDB Molecule:dna topoisomerase i; PDBTitle: human topoisomerase i ara-c complex 58 c2rocB_ not modelled 7.8 33 PDB header:apoptosis Chain: B: PDB Molecule:bcl-2-binding component 3; PDBTitle: solution structure of mcl-1 complexed with puma 59 d1f20a2 not modelled 7.8 56 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:NADPH-cytochrome p450 reductase-like 60 d2ozga1 not modelled 7.7 26 Fold:SCP-like Superfamily:SCP-like Family:EF1021 C-terminal domain-like 61 d1oq1a_ not modelled 7.7 16 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Hypothetical protein YesU 62 d1ukua_ not modelled 7.6 0 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 63 d1pjca1 not modelled 7.6 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain 64 d2oq1a2 not modelled 7.5 9 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 65 c2k7pA_ not modelled 7.5 18 PDB header:structural protein Chain: A: PDB Molecule:filamin-a; PDBTitle: filamin a ig-like domains 16-17 66 d2a5yb1 not modelled 7.5 47 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CED-4 C-terminal domain-like 67 c2qsdB_ not modelled 7.5 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: crystal structure of a protein il1583 from idiomarina loihiensis 68 d1kbia1 not modelled 7.4 16 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 69 c3czpA_ not modelled 7.4 21 PDB header:transferase Chain: A: PDB Molecule:putative polyphosphate kinase 2; PDBTitle: crystal structure of putative polyphosphate kinase 2 from pseudomonas2 aeruginosa pa01 70 c2ns2A_ not modelled 7.3 29 PDB header:cell cycle Chain: A: PDB Molecule:spindlin-1; PDBTitle: crystal structure of spindlin1 71 d1ddga2 not modelled 7.3 44 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:NADPH-cytochrome p450 reductase-like 72 c2wclA_ not modelled 7.3 36 PDB header:transport protein Chain: A: PDB Molecule:general odorant-binding protein 1; PDBTitle: structure of bmori gobp2 (general odorant binding protein 2)2 with (8e,10z)-hexadecadien-1-ol 73 d1p7hl1 not modelled 7.3 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain 74 c2kl5A_ not modelled 7.3 36 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yutd; PDBTitle: solution nmr structure of protein yutd from b.subtilis, northeast2 structural genomics consortium target sr232 75 c3a0jB_ not modelled 7.2 33 PDB header:transcription Chain: B: PDB Molecule:cold shock protein; PDBTitle: crystal structure of cold shock protein 1 from thermus2 thermophilus hb8 76 c2b9sA_ not modelled 7.2 29 PDB header:isomerase/dna Chain: A: PDB Molecule:topoisomerase i-like protein; PDBTitle: crystal structure of heterodimeric l. donovani2 topoisomerase i-vanadate-dna complex 77 d1d6za3 not modelled 7.2 17 Fold:Cystatin-like Superfamily:Amine oxidase N-terminal region Family:Amine oxidase N-terminal region 78 d1imhc1 not modelled 7.1 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain 79 d1dlpa2 not modelled 7.1 24 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 80 d1nkra2 not modelled 7.0 50 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 81 c1wrgA_ not modelled 6.8 80 PDB header:membrane protein Chain: A: PDB Molecule:light-harvesting protein b-880, beta chain; PDBTitle: light-harvesting complex 1 beta subunit from wild-type2 rhodospirillum rubrum 82 c1ibtC_ not modelled 6.8 23 PDB header:lyase Chain: C: PDB Molecule:histidine decarboxylase beta chain; PDBTitle: structure of the d53,54n mutant of histidine decarboxylase at-170 c 83 c3r2nC_ not modelled 6.7 16 PDB header:hydrolase Chain: C: PDB Molecule:cytidine deaminase; PDBTitle: crystal structure of cytidine deaminase from mycobacterium leprae 84 c2jp2A_ not modelled 6.7 13 PDB header:signaling protein Chain: A: PDB Molecule:sprouty-related, evh1 domain-containing protein PDBTitle: solution structure and resonance assignment of the n-2 terminal evh1 domain from the human spred2 protein3 (sprouty-related protein with evh1 domain isoform 2) 85 d2bk0a1 not modelled 6.7 27 Fold:TBP-like Superfamily:Bet v1-like Family:Pathogenesis-related protein 10 (PR10)-like 86 d1kfia4 not modelled 6.6 21 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 87 d1my7a_ not modelled 6.6 32 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain 88 c1meqA_ not modelled 6.6 56 PDB header:viral protein Chain: A: PDB Molecule:exterior membrane glycoprotein (gp120); PDBTitle: hiv gp120 c5 89 d2k54a1 not modelled 6.6 14 Fold:Cystatin-like Superfamily:NTF2-like Family:Atu0742-like 90 c2eiuE_ not modelled 6.6 31 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:hypothetical protein aq_1627; PDBTitle: crystal structure of a putative protein (aq1627) from aquifex aeolicus 91 c1ckxA_ not modelled 6.6 10 PDB header:metal transport Chain: A: PDB Molecule:cystic fibrosis transmembrane conductance PDBTitle: cystic fibrosis transmembrane conductance regulator:2 solution structures of peptides based on the phe508 region,3 the most common site of disease-causing delta-f508 mutation 92 d1h4ra2 not modelled 6.6 35 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Third domain of FERM 93 c2kvhA_ not modelled 6.5 63 PDB header:transcription Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32; PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein 94 c2a48A_ not modelled 6.5 20 PDB header:luminescent protein Chain: A: PDB Molecule:gfp-like fluorescent chromoprotein amfp486; PDBTitle: crystal structure of amfp486 e150q 95 d1m4ka2 not modelled 6.5 50 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 96 c3pt2A_ not modelled 6.5 11 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:rna polymerase; PDBTitle: structure of a viral otu domain protease bound to ubiquitin 97 d1x9na2 not modelled 6.4 33 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 98 d1gawa2 not modelled 6.4 56 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 99 d1jb9a2 not modelled 6.4 33 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0