PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2a48A_

Fold library id	PDB Header	Molecule	Title
c2a48A_	PDB header: luminescent protein	Chain: A: PDB Molecule: gfp-like fluorescent chromoprotein amfp486;	PDBTitle: crystal structure of amfp486 e150q

Links to external resources
Added to library: Tue Mar 16 14:36:33 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I G D D M K M T Y H M D G C V N G H Y F T V K G E G N G K P Y E G T Q T S T F K V T M A N G G P L A F S F D I L S T V F N R C F T A Y P T S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T T T T T S S S S S
S
T T T
T T S S B
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence M P D Y F K Q A F G M S Y E R T F T Y E D G G V A T A S W E I S L K G N C F E H K S T F H G V N F P A D G P V M A K K T T G W D P S F Q K M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S
T T
T T S T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T V C D G I L K G D V T A F L M L Q G G G N Y R C Q F H T S Y K T K K P V T M P P N H V V E H R I A R T D L D K G G N S V Q L T E H A V A H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T S
S S
S S S T T S S

. .

Sequence I T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	G	D	D	M	K	M	T	Y	H	M	D	G	C	V	N	G	H	Y	F	T	V	K	G	E	G	N	G	K	P	Y	E	G	T	Q	T	S	T	F	K	V	T	M	A	N	G	G	P	L	A	F	S	F	D	I	L	S	T	V	F	N	R	C	F	T	A	Y	P	T	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S												T	T													T	T	T	T											S	S	S	S	S			S		T					T	T			T	T	S	S	B			T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	M	P	D	Y	F	K	Q	A	F	G	M	S	Y	E	R	T	F	T	Y	E	D	G	G	V	A	T	A	S	W	E	I	S	L	K	G	N	C	F	E	H	K	S	T	F	H	G	V	N	F	P	A	D	G	P	V	M	A	K	K	T	T	G	W	D	P	S	F	Q	K	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S																			T	T	S													T	T															T	T	S	T	T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	V	C	D	G	I	L	K	G	D	V	T	A	F	L	M	L	Q	G	G	G	N	Y	R	C	Q	F	H	T	S	Y	K	T	K	K	P	V	T	M	P	P	N	H	V	V	E	H	R	I	A	R	T	D	L	D	K	G	G	N	S	V	Q	L	T	E	H	A	V	A	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T													T	T	S														S	S							S												S	S	T	T	S	S
	.	.
Sequence	I	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)