Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A9C3
DateThu Jan 5 11:09:52 GMT 2012
Unique Job ID6c473b93ef80daf2

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1so0a_
Top template information
Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Aldose 1-epimerase (mutarotase)
Confidence and coverage
Confidence:100.0% Coverage: 97%
335 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MLNETPALAPDGQPYRLLTLRNNAGMVVTLMDWGATLLSARIPLSDGSVREALLGCASPE
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Disorder  ????????



















































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   .........70.........80.........90.........100.........110.........120
Sequence  CYQDQAAFLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQLHGGPEGFDKRRWQIVNQ
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   .........130.........140.........150.........160.........170.........180
Sequence  NDRQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITYRATVDKPCPVNMTNHVYFNL
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   .........190.........200.........210.........220.........230.........240
Sequence  DGEQSDVRNHKLQILADEYLPVDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRK
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?







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   .........250.........260.........270.........280.........290.........300
Sequence  VKGYDHAFLLQAKGDGKKVAAHVWSADEKLQLKVYTTAPALQFYSGNFLGGTPSRGTEPY
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?



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   .........310.........320.........330.........340......
Sequence  ADWQGLALESEFLPDSPNHPEWPQPDCFLRPGEEYSSLTEYQFIAE
Secondary structure 

























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Disorder 











































??
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1so0 chain A

3D model

Region: 1 - 345
Aligned: 335
Modelled: 341
Confidence: 100.0%
Identity: 37%
Fold: Supersandwich
Superfamily: Galactose mutarotase-like
Family: Aldose 1-epimerase (mutarotase)

Phyre2

PDB 1z45 chain A

3D model

Region: 2 - 344
Aligned: 330
Modelled: 335
Confidence: 100.0%
Identity: 25%
PDB header:isomerase
Chain: A: PDB Molecule:gal10 bifunctional protein;
PDBTitle: crystal structure of the gal10 fusion protein galactose2 mutarotase/udp-galactose 4-epimerase from saccharomyces3 cerevisiae complexed with nad, udp-glucose, and galactose

Phyre2

PDB 1lur chain A

3D model

Region: 18 - 345
Aligned: 319
Modelled: 328
Confidence: 100.0%
Identity: 33%
Fold: Supersandwich
Superfamily: Galactose mutarotase-like
Family: Aldose 1-epimerase (mutarotase)

Phyre2

PDB 1nsz chain A

3D model

Region: 12 - 346
Aligned: 325
Modelled: 335
Confidence: 100.0%
Identity: 31%
Fold: Supersandwich
Superfamily: Galactose mutarotase-like
Family: Aldose 1-epimerase (mutarotase)

Phyre2

PDB 3imh chain B

3D model

Region: 2 - 345
Aligned: 323
Modelled: 344
Confidence: 100.0%
Identity: 34%
PDB header:isomerase
Chain: B: PDB Molecule:galactose-1-epimerase;
PDBTitle: crystal structure of galactose 1-epimerase from lactobacillus2 acidophilus ncfm

Phyre2

PDB 1z45 chain A domain 1

3D model

Region: 12 - 344
Aligned: 320
Modelled: 326
Confidence: 100.0%
Identity: 25%
Fold: Supersandwich
Superfamily: Galactose mutarotase-like
Family: Aldose 1-epimerase (mutarotase)

Phyre2

PDB 1yga chain A

3D model

Region: 13 - 345
Aligned: 311
Modelled: 324
Confidence: 100.0%
Identity: 26%
PDB header:isomerase
Chain: A: PDB Molecule:hypothetical 37.9 kda protein in bio3-hxt17
PDBTitle: crystal structure of saccharomyces cerevisiae yn9a protein,2 new york structural genomics consortium

Phyre2

PDB 3os7 chain D

3D model

Region: 7 - 343
Aligned: 311
Modelled: 324
Confidence: 100.0%
Identity: 14%
PDB header:isomerase
Chain: D: PDB Molecule:galactose mutarotase-like protein;
PDBTitle: crystal structure of a galactose mutarotase-like protein (ca_c0697)2 from clostridium acetobutylicum at 1.80 a resolution

Phyre2

PDB 3os7 chain B

3D model

Region: 7 - 343
Aligned: 311
Modelled: 314
Confidence: 100.0%
Identity: 14%
PDB header:isomerase
Chain: B: PDB Molecule:galactose mutarotase-like protein;
PDBTitle: crystal structure of a galactose mutarotase-like protein (ca_c0697)2 from clostridium acetobutylicum at 1.80 a resolution

Phyre2

PDB 3nre chain B

3D model

Region: 15 - 343
Aligned: 281
Modelled: 320
Confidence: 100.0%
Identity: 19%
PDB header:isomerase
Chain: B: PDB Molecule:aldose 1-epimerase;
PDBTitle: crystal structure of a putative aldose 1-epimerase (b2544) from2 escherichia coli k12 at 1.59 a resolution

Phyre2

PDB 3dcd chain A

3D model

Region: 18 - 346
Aligned: 285
Modelled: 302
Confidence: 100.0%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:galactose mutarotase related enzyme;
PDBTitle: x-ray structure of the galactose mutarotase related enzyme q5fkd7 from2 lactobacillus acidophilus at the resolution 1.9a. northeast3 structural genomics consortium target lar33.

Phyre2

PDB 3q1n chain A

3D model

Region: 17 - 343
Aligned: 284
Modelled: 309
Confidence: 100.0%
Identity: 18%
PDB header:isomerase
Chain: A: PDB Molecule:galactose mutarotase related enzyme;
PDBTitle: crystal structure of a galactose mutarotase-like protein (lsei_2598)2 from lactobacillus casei atcc 334 at 1.61 a resolution

Phyre2

PDB 3mwx chain A

3D model

Region: 8 - 343
Aligned: 300
Modelled: 312
Confidence: 100.0%
Identity: 17%
PDB header:isomerase
Chain: A: PDB Molecule:aldose 1-epimerase;
PDBTitle: crystal structure of a putative galactose mutarotase (bsu18360) from2 bacillus subtilis at 1.45 a resolution

Phyre2

PDB 3k25 chain B

3D model

Region: 7 - 346
Aligned: 276
Modelled: 307
Confidence: 100.0%
Identity: 20%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:slr1438 protein;
PDBTitle: crystal structure of slr1438 protein from synechocystis sp. pcc 6803,2 northeast structural genomics consortium target sgr112

Phyre2

PDB 2cis chain A

3D model

Region: 8 - 342
Aligned: 276
Modelled: 310
Confidence: 100.0%
Identity: 15%
PDB header:isomerase
Chain: A: PDB Molecule:hexose-6-phosphate mutarotase;
PDBTitle: structure-based functional annotation: yeast ymr099c codes2 for a d-hexose-6-phosphate mutarotase. complex with3 tagatose-6-phosphate

Phyre2

PDB 2htb chain B

3D model

Region: 7 - 346
Aligned: 269
Modelled: 301
Confidence: 100.0%
Identity: 16%
PDB header:isomerase
Chain: B: PDB Molecule:putative enzyme related to aldose 1-epimerase;
PDBTitle: crystal structure of a putative mutarotase (yead) from2 salmonella typhimurium in monoclinic form

Phyre2

PDB 1jov chain A

3D model

Region: 13 - 342
Aligned: 248
Modelled: 285
Confidence: 100.0%
Identity: 18%
Fold: Supersandwich
Superfamily: Galactose mutarotase-like
Family: Hypothetical protein HI1317

Phyre2

PDB 3ty1 chain B

3D model

Region: 12 - 346
Aligned: 289
Modelled: 295
Confidence: 99.9%
Identity: 13%
PDB header:isomerase
Chain: B: PDB Molecule:hypothetical aldose 1-epimerase;
PDBTitle: crystal structure of a hypothetical aldose 1-epimerase (kpn_04629)2 from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 1.90 a3 resolution

Phyre2

PDB 3bs6 chain B

3D model

Region: 16 - 172
Aligned: 126
Modelled: 135
Confidence: 97.3%
Identity: 17%
PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:inner membrane protein oxaa;
PDBTitle: 1.8 angstrom crystal structure of the periplasmic domain of2 the membrane insertase yidc

Phyre2

PDB 3blc chain B

3D model

Region: 16 - 175
Aligned: 127
Modelled: 141
Confidence: 96.2%
Identity: 17%
PDB header:chaperone,protein transport
Chain: B: PDB Molecule:inner membrane protein oxaa;
PDBTitle: crystal structure of the periplasmic domain of the escherichia coli2 yidc

Phyre2
1

d1so0a_
2

c1z45A_
3

d1lura_
4

d1nsza_
5

c3imhB_
6

d1z45a1
7

c1ygaA_
8

c3os7D_
9

c3os7B_
10

c3nreB_
11

c3dcdA_
12

c3q1nA_
13

c3mwxA_
14

c3k25B_
15

c2cisA_
16

c2htbB_
17

d1jova_
18

c3ty1B_
19

c3bs6B_
20

c3blcB_
21



22



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24



25



26



27



28



29



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31



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33



34



35



36



37



38



39



40



41



42



43



44



45



46



47



48



49



50



51



52



53



54



55



56






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1so0a_



100.0 37 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Aldose 1-epimerase (mutarotase)
2c1z45A_



100.0 25 PDB header:isomerase
Chain: A: PDB Molecule:gal10 bifunctional protein;
PDBTitle: crystal structure of the gal10 fusion protein galactose2 mutarotase/udp-galactose 4-epimerase from saccharomyces3 cerevisiae complexed with nad, udp-glucose, and galactose
3d1lura_



100.0 33 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Aldose 1-epimerase (mutarotase)
4d1nsza_



100.0 31 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Aldose 1-epimerase (mutarotase)
5c3imhB_



100.0 34 PDB header:isomerase
Chain: B: PDB Molecule:galactose-1-epimerase;
PDBTitle: crystal structure of galactose 1-epimerase from lactobacillus2 acidophilus ncfm
6d1z45a1



100.0 25 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Aldose 1-epimerase (mutarotase)
7c1ygaA_



100.0 26 PDB header:isomerase
Chain: A: PDB Molecule:hypothetical 37.9 kda protein in bio3-hxt17
PDBTitle: crystal structure of saccharomyces cerevisiae yn9a protein,2 new york structural genomics consortium
8c3os7D_



100.0 14 PDB header:isomerase
Chain: D: PDB Molecule:galactose mutarotase-like protein;
PDBTitle: crystal structure of a galactose mutarotase-like protein (ca_c0697)2 from clostridium acetobutylicum at 1.80 a resolution
9c3os7B_



100.0 14 PDB header:isomerase
Chain: B: PDB Molecule:galactose mutarotase-like protein;
PDBTitle: crystal structure of a galactose mutarotase-like protein (ca_c0697)2 from clostridium acetobutylicum at 1.80 a resolution
10c3nreB_



100.0 19 PDB header:isomerase
Chain: B: PDB Molecule:aldose 1-epimerase;
PDBTitle: crystal structure of a putative aldose 1-epimerase (b2544) from2 escherichia coli k12 at 1.59 a resolution
11c3dcdA_



100.0 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:galactose mutarotase related enzyme;
PDBTitle: x-ray structure of the galactose mutarotase related enzyme q5fkd7 from2 lactobacillus acidophilus at the resolution 1.9a. northeast3 structural genomics consortium target lar33.
12c3q1nA_



100.0 18 PDB header:isomerase
Chain: A: PDB Molecule:galactose mutarotase related enzyme;
PDBTitle: crystal structure of a galactose mutarotase-like protein (lsei_2598)2 from lactobacillus casei atcc 334 at 1.61 a resolution
13c3mwxA_



100.0 17 PDB header:isomerase
Chain: A: PDB Molecule:aldose 1-epimerase;
PDBTitle: crystal structure of a putative galactose mutarotase (bsu18360) from2 bacillus subtilis at 1.45 a resolution
14c3k25B_



100.0 20 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:slr1438 protein;
PDBTitle: crystal structure of slr1438 protein from synechocystis sp. pcc 6803,2 northeast structural genomics consortium target sgr112
15c2cisA_



100.0 15 PDB header:isomerase
Chain: A: PDB Molecule:hexose-6-phosphate mutarotase;
PDBTitle: structure-based functional annotation: yeast ymr099c codes2 for a d-hexose-6-phosphate mutarotase. complex with3 tagatose-6-phosphate
16c2htbB_



100.0 16 PDB header:isomerase
Chain: B: PDB Molecule:putative enzyme related to aldose 1-epimerase;
PDBTitle: crystal structure of a putative mutarotase (yead) from2 salmonella typhimurium in monoclinic form
17d1jova_



100.0 18 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Hypothetical protein HI1317
18c3ty1B_



99.9 13 PDB header:isomerase
Chain: B: PDB Molecule:hypothetical aldose 1-epimerase;
PDBTitle: crystal structure of a hypothetical aldose 1-epimerase (kpn_04629)2 from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 1.90 a3 resolution
19c3bs6B_



97.3 17 PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:inner membrane protein oxaa;
PDBTitle: 1.8 angstrom crystal structure of the periplasmic domain of2 the membrane insertase yidc
20c3blcB_



96.2 17 PDB header:chaperone,protein transport
Chain: B: PDB Molecule:inner membrane protein oxaa;
PDBTitle: crystal structure of the periplasmic domain of the escherichia coli2 yidc
21c1so9A_



not modelled 59.9 24 PDB header:metal transport
Chain: A: PDB Molecule:cytochrome c oxidase assembly protein ctag;
PDBTitle: solution structure of apocox11, 30 structures
22d1so9a_



not modelled 59.9 24 Fold:Ctag/Cox11
Superfamily:Ctag/Cox11
Family:Ctag/Cox11
23d1k1xa2



not modelled 45.1 13 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:4-alpha-glucanotransferase, C-terminal domain
24d1jz8a4



not modelled 19.0 20 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:beta-Galactosidase, domain 5
25c2xn1B_



not modelled 18.6 12 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase;
PDBTitle: structure of alpha-galactosidase from lactobacillus acidophilus ncfm2 with tris
26d2hkja2



not modelled 14.6 45 Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:DNA gyrase/MutL, second domain
27c2zooA_



not modelled 14.0 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable nitrite reductase;
PDBTitle: crystal structure of nitrite reductase from pseudoalteromonas2 haloplanktis tac125
28d1f2ri_



not modelled 13.9 25 Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:CAD domain
29d4ubpb_



not modelled 12.8 18 Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
30d1oe1a1



not modelled 12.8 14 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
31d1e9ya1



not modelled 12.2 18 Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
32d1ibxb_



not modelled 10.0 25 Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:CAD domain
33c1ibxB_



not modelled 10.0 25 PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:chimera of igg binding protein g and dna
PDBTitle: nmr structure of dff40 and dff45 n-terminal domain complex
34d1c9fa_



not modelled 9.9 32 Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:CAD domain
35d1q2la4



not modelled 9.9 29 Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:MPP-like
36d1ejxb_



not modelled 9.5 17 Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
37d1ibxa_



not modelled 9.3 21 Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:CAD domain
38c2zf9D_



not modelled 8.9 6 PDB header:structural protein
Chain: D: PDB Molecule:scae cell-surface anchored scaffoldin protein;
PDBTitle: crystal structure of a type iii cohesin module from the cellulosomal2 scae cell-surface anchoring scaffoldin of ruminococcus flavefaciens
39d1ndsa1



not modelled 8.1 17 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
40c3cw3A_



not modelled 8.0 16 PDB header:oncoprotein
Chain: A: PDB Molecule:absent in melanoma 1 protein;
PDBTitle: crystal structure of aim1g1
41c2g8gA_



not modelled 7.2 40 PDB header:virus
Chain: A: PDB Molecule:capsid;
PDBTitle: structurally mapping the diverse phenotype of adeno-2 associated virus serotype 4
42d1m53a1



not modelled 7.0 9 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
43c3mi6A_



not modelled 6.5 13 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of the alpha-galactosidase from lactobacillus2 brevis, northeast structural genomics consortium target lbr11.
44c3kieF_



not modelled 6.4 33 PDB header:virus
Chain: F: PDB Molecule:capsid protein vp1;
PDBTitle: crystal structure of adeno-associated virus serotype 3b
45c1v06A_



not modelled 6.3 33 PDB header:dna-binding protein
Chain: A: PDB Molecule:hmg box-containing protein 1;
PDBTitle: axh domain of the transcription factor hbp1 from m.musculus
46d1yq2a5



not modelled 6.2 25 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
47c2x3bB_



not modelled 6.2 34 PDB header:hydrolase
Chain: B: PDB Molecule:toxic extracellular endopeptidase;
PDBTitle: asap1 inactive mutant e294a, an extracellular toxic zinc2 metalloendopeptidase
48c2kl8A_



not modelled 6.1 44 PDB header:de novo protein
Chain: A: PDB Molecule:or15;
PDBTitle: solution nmr structure of de novo designed ferredoxin-like2 fold protein, northeast structural genomics consortium3 target or15
49c1wa1X_



not modelled 6.0 14 PDB header:reductase
Chain: X: PDB Molecule:dissimilatory copper-containing nitrite
PDBTitle: crystal structure of h313q mutant of alcaligenes2 xylosoxidans nitrite reductase
50c3nttA_



not modelled 5.9 39 PDB header:virus
Chain: A: PDB Molecule:capsid protein;
PDBTitle: structural insights of adeno-associated virus 5. a gene therapy vector2 for cystic fibrosis
51c3dqgC_



not modelled 5.9 11 PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70 kda protein f;
PDBTitle: peptide-binding domain of heat shock 70 kda protein f, mitochondrial2 precursor, from caenorhabditis elegans.
52d1s58a_



not modelled 5.5 29 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:ssDNA viruses
Family:Parvoviridae-like VP
53c2eelA_



not modelled 5.4 22 PDB header:apoptosis
Chain: A: PDB Molecule:cell death activator cide-a;
PDBTitle: solution structure of the cide-n domain of human cell death2 activator cide-a
54c3qgaD_



not modelled 5.4 17 PDB header:hydrolase
Chain: D: PDB Molecule:fusion of urease beta and gamma subunits;
PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae
55d1mzya1



not modelled 5.3 14 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
56d1vlba2



not modelled 5.3 14 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0