Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP77319
DateThu Jan 5 12:27:42 GMT 2012
Unique Job ID6c2cc87ebb1c3be3

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3d2fC_
Top template information
PDB header:chaperone
Chain: C: PDB Molecule:heat shock protein homolog sse1;
PDBTitle: crystal structure of a complex of sse1p and hsp70
Confidence and coverage
Confidence:100.0% Coverage: 99%
549 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MDNAELAIGIDLGTTNSLIAVWKDGAAQLIPNKFGEYLTPSIISMDENNHILVGKPAVSR
Secondary structure 
SS confidence 
Disorder  ?????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  RTSHPDKTAALFKRAMGSNTNWRLGSDTFNAPELSSLVLRSLKEDAEEFLQRPIKDVVIS
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  VPAYFSDEQRKHTRLAAELAGLNAVRLINEPTAAAMAYGLHTQQNTRSLVFDLGGGTFDV
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  TVLEYATPVIEVHASAGDNFLGGEDFTHMLVDEVLKRADVARTTLNESELAALYACVEAA
Secondary structure 
SS confidence 
Disorder 
?
???????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  KCSNQSPLHIRWQYQEETRECEFYENELEDLWLPLLNRLRVPIEQALRDARLKPSQIDSL
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  VLVGGASQMPLVQRIAVRLFGKLPYQSYDPSTIVALGAAIQAACRLRSEDIEEVILTDIC
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  PYSLGVEVNRQGVSGIFSPIIERNTTVPVSRVETYSTMHPEQDSITVNVYQGENHKVKNN
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  ILVESFDVPLKKTGAYQSIDIRFSYDINGLLEVDVLLEDGSVKSRVINHSPVTLSAQQIE
Secondary structure 
SS confidence 
Disorder 
?????
?
????
????????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  ESRTRLSALKIYPRDMLINRTFKAKLEELWARALGDEREEIGRVITDFDAALQSNDMARV
Secondary structure 
SS confidence 
Disorder 
??????
????
????
Disorder confidence 
 
   .........550......
Sequence  DEVRRRASDYLAIEIP
Secondary structure 
SS confidence 
Disorder 
?????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3d2f chain C

3D model

Region: 5 - 556
Aligned: 549
Modelled: 552
Confidence: 100.0%
Identity: 20%
PDB header:chaperone
Chain: C: PDB Molecule:heat shock protein homolog sse1;
PDBTitle: crystal structure of a complex of sse1p and hsp70

Phyre2

PDB 2kho chain A

3D model

Region: 7 - 552
Aligned: 540
Modelled: 546
Confidence: 100.0%
Identity: 32%
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 70;
PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate

Phyre2

PDB 2v7y chain A

3D model

Region: 1 - 497
Aligned: 486
Modelled: 487
Confidence: 100.0%
Identity: 35%
PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state

Phyre2

PDB 1dkg chain D

3D model

Region: 7 - 346
Aligned: 340
Modelled: 340
Confidence: 100.0%
Identity: 37%
PDB header:complex (hsp24/hsp70)
Chain: D: PDB Molecule:molecular chaperone dnak;
PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak

Phyre2

PDB 3iuc chain C

3D model

Region: 1 - 347
Aligned: 345
Modelled: 347
Confidence: 100.0%
Identity: 39%
PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated
PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp

Phyre2

PDB 1hpm chain A

3D model

Region: 7 - 346
Aligned: 339
Modelled: 340
Confidence: 100.0%
Identity: 38%
PDB header:hydrolase (acting on acid anhydrides)
Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat-
PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site

Phyre2

PDB 2v7z chain A

3D model

Region: 3 - 347
Aligned: 344
Modelled: 345
Confidence: 100.0%
Identity: 38%
PDB header:chaperone
Chain: A: PDB Molecule:heat shock cognate 71 kda protein;
PDBTitle: crystal structure of the 70-kda heat shock cognate protein2 from rattus norvegicus in post-atp hydrolysis state

Phyre2

PDB 1jcg chain A

3D model

Region: 1 - 352
Aligned: 326
Modelled: 352
Confidence: 100.0%
Identity: 22%
PDB header:structural protein
Chain: A: PDB Molecule:rod shape-determining protein mreb;
PDBTitle: mreb from thermotoga maritima, amppnp

Phyre2

PDB 3h1q chain B

3D model

Region: 3 - 342
Aligned: 247
Modelled: 273
Confidence: 100.0%
Identity: 23%
PDB header:structural protein
Chain: B: PDB Molecule:ethanolamine utilization protein eutj;
PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans

Phyre2

PDB 1e4g chain T

3D model

Region: 3 - 342
Aligned: 319
Modelled: 336
Confidence: 100.0%
Identity: 13%
PDB header:bacterial cell division
Chain: T: PDB Molecule:cell division protein ftsa;
PDBTitle: ftsa (atp-bound form) from thermotoga maritima

Phyre2

PDB 1o1f chain 4

3D model

Region: 2 - 344
Aligned: 320
Modelled: 335
Confidence: 100.0%
Identity: 13%
PDB header:contractile protein
Chain: 4: PDB Molecule:skeletal muscle actin;
PDBTitle: molecular models of averaged rigor crossbridges from2 tomograms of insect flight muscle

Phyre2

PDB 1dkg chain D domain 2

3D model

Region: 165 - 346
Aligned: 182
Modelled: 182
Confidence: 100.0%
Identity: 34%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Actin/HSP70

Phyre2

PDB 1bup chain A domain 2

3D model

Region: 163 - 346
Aligned: 184
Modelled: 184
Confidence: 100.0%
Identity: 35%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Actin/HSP70

Phyre2

PDB 2e8a chain A domain 1

3D model

Region: 4 - 162
Aligned: 158
Modelled: 159
Confidence: 100.0%
Identity: 42%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Actin/HSP70

Phyre2

PDB 2e8a chain A domain 2

3D model

Region: 163 - 347
Aligned: 185
Modelled: 185
Confidence: 100.0%
Identity: 37%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Actin/HSP70

Phyre2

PDB 1dkg chain D domain 1

3D model

Region: 7 - 162
Aligned: 156
Modelled: 156
Confidence: 100.0%
Identity: 42%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Actin/HSP70

Phyre2

PDB 2d0o chain A

3D model

Region: 7 - 344
Aligned: 316
Modelled: 324
Confidence: 100.0%
Identity: 15%
PDB header:chaperone
Chain: A: PDB Molecule:diol dehydratase-reactivating factor large
PDBTitle: strcuture of diol dehydratase-reactivating factor complexed2 with adp and mg2+

Phyre2

PDB 1bup chain A domain 1

3D model

Region: 7 - 163
Aligned: 156
Modelled: 157
Confidence: 100.0%
Identity: 40%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Actin/HSP70

Phyre2

PDB 3dwl chain B

3D model

Region: 5 - 343
Aligned: 310
Modelled: 326
Confidence: 100.0%
Identity: 15%
PDB header:structural protein
Chain: B: PDB Molecule:actin-related protein 3;
PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit

Phyre2

PDB 2p9l chain A

3D model

Region: 7 - 344
Aligned: 310
Modelled: 320
Confidence: 100.0%
Identity: 15%
PDB header:structural protein
Chain: A: PDB Molecule:actin-like protein 3;
PDBTitle: crystal structure of bovine arp2/3 complex

Phyre2
1
c3d2fC_
2
c2khoA_
3
c2v7yA_
4
c1dkgD_
5
c3iucC_
6
c1hpmA_
7
c2v7zA_
8
c1jcgA_
9
c3h1qB_
10
c1e4gT_
11
c1o1f4_
12
d1dkgd2
13
d1bupa2
14
d2e8aa1
15
d2e8aa2
16
d1dkgd1
17
c2d0oA_
18
d1bupa1
19
c3dwlB_
20
c2p9lA_
21
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3d2fC_
100.0 20 PDB header:chaperone
Chain: C: PDB Molecule:heat shock protein homolog sse1;
PDBTitle: crystal structure of a complex of sse1p and hsp70
2c2khoA_
100.0 32 PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 70;
PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate
3c2v7yA_
100.0 35 PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state
4c1dkgD_
100.0 37 PDB header:complex (hsp24/hsp70)
Chain: D: PDB Molecule:molecular chaperone dnak;
PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak
5c3iucC_
100.0 39 PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated
PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp
6c1hpmA_
100.0 38 PDB header:hydrolase (acting on acid anhydrides)
Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat-
PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site
7c2v7zA_
100.0 38 PDB header:chaperone
Chain: A: PDB Molecule:heat shock cognate 71 kda protein;
PDBTitle: crystal structure of the 70-kda heat shock cognate protein2 from rattus norvegicus in post-atp hydrolysis state
8c1jcgA_
100.0 22 PDB header:structural protein
Chain: A: PDB Molecule:rod shape-determining protein mreb;
PDBTitle: mreb from thermotoga maritima, amppnp
9c3h1qB_
100.0 23 PDB header:structural protein
Chain: B: PDB Molecule:ethanolamine utilization protein eutj;
PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans
10c1e4gT_
100.0 13 PDB header:bacterial cell division
Chain: T: PDB Molecule:cell division protein ftsa;
PDBTitle: ftsa (atp-bound form) from thermotoga maritima
11c1o1f4_
100.0 13 PDB header:contractile protein
Chain: 4: PDB Molecule:skeletal muscle actin;
PDBTitle: molecular models of averaged rigor crossbridges from2 tomograms of insect flight muscle
12d1dkgd2
100.0 34 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
13d1bupa2
100.0 35 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
14d2e8aa1
100.0 42 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
15d2e8aa2
100.0 37 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
16d1dkgd1
100.0 42 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
17c2d0oA_
100.0 15 PDB header:chaperone
Chain: A: PDB Molecule:diol dehydratase-reactivating factor large
PDBTitle: strcuture of diol dehydratase-reactivating factor complexed2 with adp and mg2+
18d1bupa1
100.0 40 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
19c3dwlB_
100.0 15 PDB header:structural protein
Chain: B: PDB Molecule:actin-related protein 3;
PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit
20c2p9lA_
100.0 15 PDB header:structural protein
Chain: A: PDB Molecule:actin-like protein 3;
PDBTitle: crystal structure of bovine arp2/3 complex
21c3dpqE_
not modelled 100.0 22 PDB header:chaperone, peptide binding protein
Chain: E: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the substrate binding domain of e.2 coli dnak in complex with a long pyrrhocoricin-derived3 inhibitor peptide (form b)
22c1u00A_
not modelled 100.0 23 PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein hsca;
PDBTitle: hsca substrate binding domain complexed with the iscu2 recognition peptide elppvkihc
23c1mwmA_
not modelled 100.0 15 PDB header:structural protein
Chain: A: PDB Molecule:parm;
PDBTitle: parm from plasmid r1 adp form
24d1jcea2
not modelled 99.9 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
25c2fsnB_
not modelled 99.9 20 PDB header:structural protein
Chain: B: PDB Molecule:hypothetical protein ta0583;
PDBTitle: crystal structure of ta0583, an archaeal actin homolog, complex with2 adp
26d1jcea1
not modelled 99.9 33 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
27c3qb0C_
not modelled 99.9 18 PDB header:structural protein
Chain: C: PDB Molecule:actin-related protein 4;
PDBTitle: crystal structure of actin-related protein arp4 from s. cerevisiae2 complexed with atp
28c3js6A_
not modelled 99.9 17 PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized parm protein;
PDBTitle: crystal structure of apo psk41 parm protein
29c3n8eA_
not modelled 99.9 24 PDB header:chaperone
Chain: A: PDB Molecule:stress-70 protein, mitochondrial;
PDBTitle: substrate binding domain of the human heat shock 70kda protein 92 (mortalin)
30c2ychA_
not modelled 99.8 21 PDB header:cell cycle
Chain: A: PDB Molecule:competence protein pilm;
PDBTitle: pilm-piln type iv pilus biogenesis complex
31c1bprA_
not modelled 99.8 21 PDB header:molecular chaperone
Chain: A: PDB Molecule:dnak;
PDBTitle: nmr structure of the substrate binding domain of dnak,2 minimized average structure
32d1e4ft2
not modelled 99.8 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
33d1yuwa1
not modelled 99.8 27 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
34c2op6A_
not modelled 99.8 25 PDB header:peptide binding protein
Chain: A: PDB Molecule:heat shock 70 kda protein d;
PDBTitle: peptide-binding domain of heat shock 70 kda protein d precursor from2 c.elegans
35d2zgya2
not modelled 99.7 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
36d1u00a2
not modelled 99.7 27 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
37d1dkza2
not modelled 99.7 25 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
38c3dqgC_
not modelled 99.7 25 PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70 kda protein f;
PDBTitle: peptide-binding domain of heat shock 70 kda protein f, mitochondrial2 precursor, from caenorhabditis elegans.
39d1huxa_
not modelled 99.6 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
40d2fsja1
not modelled 99.5 22 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Ta0583-like
41d1nm1a2
not modelled 99.3 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
42d2hf3a2
not modelled 99.3 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
43d2fxua2
not modelled 99.3 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
44d1yaga2
not modelled 99.1 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
45d1k8ka2
not modelled 99.1 12 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
46c2p9kB_
not modelled 99.0 18 PDB header:structural protein
Chain: B: PDB Molecule:actin-like protein 2;
PDBTitle: crystal structure of bovine arp2/3 complex co-crystallized2 with atp and crosslinked with glutaraldehyde
47d1k8kb1
not modelled 99.0 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
48c2e2pA_
not modelled 98.9 14 PDB header:transferase
Chain: A: PDB Molecule:hexokinase;
PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp
49c3ifrB_
not modelled 98.9 16 PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum
50d2fxua1
not modelled 98.3 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
51c3gg4B_
not modelled 98.3 14 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis
52d1c0fa1
not modelled 98.3 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
53d2hf3a1
not modelled 98.3 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
54d2ewsa1
not modelled 98.2 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
55d1yaga1
not modelled 98.2 13 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
56d1k8ka1
not modelled 98.0 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
57c3hz6A_
not modelled 98.0 16 PDB header:transferase
Chain: A: PDB Molecule:xylulokinase;
PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum
58c2nlxA_
not modelled 97.9 17 PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: crystal structure of the apo e. coli xylulose kinase
59c1nbwA_
not modelled 97.9 21 PDB header:hydrolase
Chain: A: PDB Molecule:glycerol dehydratase reactivase alpha subunit;
PDBTitle: glycerol dehydratase reactivase
60c3htvA_
not modelled 97.7 17 PDB header:transferase
Chain: A: PDB Molecule:d-allose kinase;
PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution
61d1r59o2
not modelled 97.7 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
62d2p3ra2
not modelled 97.7 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
63c2dpnB_
not modelled 97.7 20 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8
64c3i8bA_
not modelled 97.7 26 PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis
65c3gbtA_
not modelled 97.7 11 PDB header:transferase
Chain: A: PDB Molecule:gluconate kinase;
PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus
66c2zf5O_
not modelled 97.7 20 PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon
67c3jvpA_
not modelled 97.7 18 PDB header:transferase
Chain: A: PDB Molecule:ribulokinase;
PDBTitle: crystal structure of ribulokinase from bacillus halodurans
68c2cgkB_
not modelled 97.7 17 PDB header:transferase
Chain: B: PDB Molecule:l-rhamnulose kinase;
PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation.
69c2ch5D_
not modelled 97.6 12 PDB header:transferase
Chain: D: PDB Molecule:nagk protein;
PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine
70c1xupO_
not modelled 97.6 18 PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol
71c2ap1A_
not modelled 97.6 15 PDB header:transferase
Chain: A: PDB Molecule:putative regulator protein;
PDBTitle: crystal structure of the putative regulatory protein
72c3flcX_
not modelled 97.6 19 PDB header:transferase
Chain: X: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol
73c2qm1D_
not modelled 97.6 17 PDB header:transferase
Chain: D: PDB Molecule:glucokinase;
PDBTitle: crystal structure of glucokinase from enterococcus faecalis
74c1glbG_
not modelled 97.5 16 PDB header:phosphotransferase
Chain: G: PDB Molecule:glycerol kinase;
PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase
75c3g25B_
not modelled 97.5 20 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol.
76c2d4wA_
not modelled 97.5 18 PDB header:transferase
Chain: A: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060
77c3ezwD_
not modelled 97.4 20 PDB header:transferase
Chain: D: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices
78c2floA_
not modelled 97.3 20 PDB header:hydrolase
Chain: A: PDB Molecule:exopolyphosphatase;
PDBTitle: crystal structure of exopolyphosphatase (ppx) from e. coli o157:h7
79c2ivoC_
not modelled 97.3 16 PDB header:hydrolase
Chain: C: PDB Molecule:up1;
PDBTitle: structure of up1 protein
80c2w40C_
not modelled 97.3 16 PDB header:transferase
Chain: C: PDB Molecule:glycerol kinase, putative;
PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol
81c3vgkB_
not modelled 97.2 17 PDB header:transferase
Chain: B: PDB Molecule:glucokinase;
PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus
82d1nbwa3
not modelled 97.2 23 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ATPase domain of dehydratase reactivase alpha subunit
83d1dkza1
not modelled 97.2 17 Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Heat shock protein 70kD (HSP70), C-terminal subdomain
Family:Heat shock protein 70kD (HSP70), C-terminal subdomain
84d1e4ft1
not modelled 97.2 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
85d1u00a1
not modelled 97.1 16 Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Heat shock protein 70kD (HSP70), C-terminal subdomain
Family:Heat shock protein 70kD (HSP70), C-terminal subdomain
86d2d0oa3
not modelled 96.9 24 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ATPase domain of dehydratase reactivase alpha subunit
87c3mdqA_
not modelled 96.9 14 PDB header:hydrolase
Chain: A: PDB Molecule:exopolyphosphatase;
PDBTitle: crystal structure of an exopolyphosphatase (chu_0316) from cytophaga2 hutchinsonii atcc 33406 at 1.50 a resolution
88d1dkyb1
not modelled 96.9 18 Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Heat shock protein 70kD (HSP70), C-terminal subdomain
Family:Heat shock protein 70kD (HSP70), C-terminal subdomain
89c1t6dB_
not modelled 96.4 15 PDB header:hydrolase
Chain: B: PDB Molecule:exopolyphosphatase;
PDBTitle: miras phasing of the aquifex aeolicus ppx/gppa phosphatase: crystal2 structure of the type ii variant
90c1z05A_
not modelled 96.3 16 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, rok family;
PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein.
91c1z6rC_
not modelled 96.1 10 PDB header:transcription
Chain: C: PDB Molecule:mlc protein;
PDBTitle: crystal structure of mlc from escherichia coli
92c2q2rA_
not modelled 96.1 16 PDB header:transferase
Chain: A: PDB Molecule:glucokinase 1, putative;
PDBTitle: trypanosoma cruzi glucokinase in complex with beta-d-glucose and adp
93d2fsja2
not modelled 96.0 20 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Ta0583-like
94c3hi0B_
not modelled 95.6 22 PDB header:hydrolase
Chain: B: PDB Molecule:putative exopolyphosphatase;
PDBTitle: crystal structure of putative exopolyphosphatase (17739545) from2 agrobacterium tumefaciens str. c58 (dupont) at 2.30 a resolution
95c3en9B_
not modelled 95.5 16 PDB header:hydrolase
Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase;
PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein
96c3lofF_
not modelled 95.3 16 PDB header:chaperone
Chain: F: PDB Molecule:heat shock 70 kda protein 1;
PDBTitle: c-terminal domain of human heat shock 70kda protein 1b.
97c3cqyA_
not modelled 95.1 19 PDB header:transferase
Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase;
PDBTitle: crystal structure of a functionally unknown protein (so_1313) from2 shewanella oneidensis mr-1
98d1sz2a1
not modelled 94.7 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glucokinase
99d1ud0a_
not modelled 94.6 17 Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Heat shock protein 70kD (HSP70), C-terminal subdomain
Family:Heat shock protein 70kD (HSP70), C-terminal subdomain
100c3tsuA_
not modelled 94.4 17 PDB header:transferase
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate
101c3enoB_
not modelled 94.3 13 PDB header:hydrolase/unknown function
Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase;
PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1
102c1ud0B_
not modelled 94.1 16 PDB header:chaperone
Chain: B: PDB Molecule:70 kda heat-shock-like protein;
PDBTitle: crystal structure of the c-terminal 10-kda subdomain of hsc70
103c2p32B_
not modelled 93.9 18 PDB header:chaperone
Chain: B: PDB Molecule:heat shock 70 kda protein a;
PDBTitle: crystal structure of the c-terminal 10 kda subdomain from c. elegans2 hsp70
104c3h6eB_
not modelled 93.7 14 PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of a carbohydrate kinase from novosphingobium2 aromaticivorans
105c3cerD_
not modelled 93.7 16 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:possible exopolyphosphatase-like protein;
PDBTitle: crystal structure of the exopolyphosphatase-like protein2 q8g5j2. northeast structural genomics consortium target3 blr13
106d2p3ra1
not modelled 93.5 29 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
107c2aa4B_
not modelled 93.5 14 PDB header:transferase
Chain: B: PDB Molecule:putative n-acetylmannosamine kinase;
PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium
108d2ap1a1
not modelled 92.8 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
109c1zc6A_
not modelled 92.0 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable n-acetylglucosamine kinase;
PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23.
110d2i7na2
not modelled 92.0 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
111c2hoeA_
not modelled 92.0 16 PDB header:transferase
Chain: A: PDB Molecule:n-acetylglucosamine kinase;
PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution
112c3cetA_
not modelled 91.7 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved archaeal protein;
PDBTitle: crystal structure of the pantheonate kinase-like protein2 q6m145 at the resolution 1.8 a. northeast structural3 genomics consortium target mrr63
113d2i7pa1
not modelled 91.5 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
114d2aa4a2
not modelled 91.5 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
115c3eo3B_
not modelled 91.4 16 PDB header:isomerase, transferase
Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n-
PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein
116d1z05a2
not modelled 91.0 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
117d2ch5a2
not modelled 90.9 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
118d1r59o1
not modelled 90.0 27 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
119c3aapA_
not modelled 89.2 25 PDB header:hydrolase
Chain: A: PDB Molecule:ectonucleoside triphosphate diphosphohydrolase i;
PDBTitle: crystal structure of lp1ntpdase from legionella pneumophila
120d1u6za3
not modelled 89.1 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Ppx/GppA phosphatase

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0