Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0CK95
DateWed Jan 25 15:20:37 GMT 2012
Unique Job ID6ba547f08901501c

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3b37A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:aminopeptidase n;
PDBTitle: crystal structure of e. coli aminopeptidase n in complex with tyrosine
Confidence and coverage
Confidence: 88.4% Coverage: 14%
209 residues ( 14% of your sequence) have been modelled with 88.4% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNKKFKYKKSLLAAILSATLLAGCDGGGSGSSSDTPPVDSGTGSLPEVKPDPTPNPEPTP
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   .........70.........80.........90.........100.........110.........120
Sequence  EPTPDPEPTPEPIPDPEPTPEPEPEPVPTKTGYLTLGGSQRVTGATCNGESSDGFTFKPG
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   .........130.........140.........150.........160.........170.........180
Sequence  EDVTCVAGNTTIATFNTQSEAARSLRAVEKVSFSLEDAQELAGSDDKKSNAVSLVTSSNS
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   .........190.........200.........210.........220.........230.........240
Sequence  CPANTEQVCLTFSSVIESKRFDSLYKQIDLAPEEFKKLVNEEVENNAATDKAPSTHTSPV
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   .........250.........260.........270.........280.........290.........300
Sequence  VPVTTPGTKPDLNASFVSANAEQFYQYQPTEIILSEGRLVDSQGYGVAGVNYYTNSGRGV
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   .........310.........320.........330.........340.........350.........360
Sequence  TGENGEFSFSWGETISFGIDTFELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQ
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   .........370.........380.........390.........400.........410.........420
Sequence  NNTRVVPDDVRKVFAEYPNVINEIINLSLSNGATLGEGEQVVNLPNEFIEQFNTGQAKEI
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   .........430.........440.........450.........460.........470.........480
Sequence  DTAICAKTDGCNEARWFSLTTRNVNDGQIQGVINKLWGVDTNYKSVSKFHVFHDSTNFYG
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   .........490.........500.........510.........520.........530.........540
Sequence  STGNARGQAVVNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVT
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   .........550.........560.........570.........580.........590.........600
Sequence  RDTATFNLPFISLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDM
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   .........610.........620.........630.........640.........650.........660
Sequence  KNFMENVLRYLSDDKWKPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVE
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   .........670.........680.........690.........700.........710.........720
Sequence  HLSSYGDLDPQEMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKG
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   .........730.........740.........750.........760.........770.........780
Sequence  GSVLIMENVMSNLKEESASGFVRLLDAAGLSMALNKSVVNNDPQGYPNRVRQQRATGIWV
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   .........790.........800.........810.........820.........830.........840
Sequence  YERYPAVDGALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDGKQETRYAFIDE
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   .........850.........860.........870.........880.........890.........900
Sequence  ADHKTEDSLKAAKEKIFAAFPGLKECTNPAYHYEVNCLEYRPGTGVPVTGGMYVPQYTQL
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   .........910.........920.........930.........940.........950.........960
Sequence  SLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGERLSSVDLERLYQNMSVWLWNDT
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  SYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSADLKKSLVDNNMIYGDGSSKAGMM
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   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  NPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGAVSEEGQNVTETISLYSNPTKWFA
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   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  GNMQSTGLWAPAQKEVTIKSNANVPVTVTVALADDLTGREKHEVALNRPPRVTKTYSLDA
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   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  SGTVKFKVPYGGLIYIKGNSSTNESASFTFTGVVKAPFYKDGAWKNDLNSPAPLGELESD
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   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  AFVYTTPKKNLNASNYTGGLEQFANDLDTFASSMNDFYGRDSEDGKHRMFTYKNLPGHKH
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   .........1270.........1280.........1290.........1300.........1310.........1320
Sequence  RFTNDVQISIGDAHSGYPVMNSSFSPNSTTLPTTPLNDWLIWHEVGHNAAETPLTVPGAT
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   .........1330.........1340.........1350.........1360.........1370.........1380
Sequence  EVANNVLALYMQDRYLGKMNRVADDITVAPEYLEESNNQAWARGGAGDRLLMYAQLKEWA
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   .........1390.........1400.........1410.........1420.........1430.........1440
Sequence  EKNFDIKKWYPDGTPLPEFYSEREGMKGWNLFQLMHRKARGDEVSNDKFGGKNYCAESNG
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   .........1450.........1460.........1470.........1480.........1490.........1500
Sequence  NAADTLMLCASWVAQTDLSEFFKKWNPGANAYQLPGASEMSFEGGVSQSAYNTLASLDLP
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   .........1510.........1520
Sequence  KPEQGPETINQVTEHKMSAE
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3b37 chain A

3D model

Region: 1215 - 1465
Aligned: 209
Modelled: 237
Confidence: 88.4%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:aminopeptidase n;
PDBTitle: crystal structure of e. coli aminopeptidase n in complex with tyrosine

Phyre2

PDB 3ebh chain A

3D model

Region: 1215 - 1465
Aligned: 209
Modelled: 237
Confidence: 85.6%
Identity: 12%
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:m1 family aminopeptidase;
PDBTitle: structure of the m1 alanylaminopeptidase from malaria complexed with2 bestatin

Phyre2

PDB 2boy chain C

3D model

Region: 245 - 309
Aligned: 65
Modelled: 65
Confidence: 84.8%
Identity: 26%
PDB header:oxidoreductase
Chain: C: PDB Molecule:3-chlorocatechol 1,2-dioxygenase;
PDBTitle: crystal structure of 3-chlorocatechol 1,2-dioxygenase from2 rhodococcus opacus 1cp

Phyre2

PDB 2xsu chain A

3D model

Region: 245 - 309
Aligned: 65
Modelled: 65
Confidence: 82.9%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2 dioxygenase;
PDBTitle: crystal structure of the a72g mutant of acinetobacter2 radioresistens catechol 1,2 dioxygenase

Phyre2

PDB 2xdt chain A

3D model

Region: 1215 - 1465
Aligned: 215
Modelled: 249
Confidence: 82.6%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 1;
PDBTitle: crystal structure of the soluble domain of human2 endoplasmic reticulum aminopeptidase 1 erap1

Phyre2

PDB 1s9a chain A

3D model

Region: 234 - 309
Aligned: 76
Modelled: 76
Confidence: 81.1%
Identity: 24%
Fold: Prealbumin-like
Superfamily: Aromatic compound dioxygenase
Family: Aromatic compound dioxygenase

Phyre2

PDB 3rht chain B

3D model

Region: 692 - 726
Aligned: 35
Modelled: 33
Confidence: 79.5%
Identity: 14%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:(gatase1)-like protein;
PDBTitle: crystal structure of type 1 glutamine amidotransferase (gatase1)-like2 protein from planctomyces limnophilus

Phyre2

PDB 2gtq chain A

3D model

Region: 1215 - 1465
Aligned: 210
Modelled: 247
Confidence: 79.2%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:aminopeptidase n;
PDBTitle: crystal structure of aminopeptidase n from human pathogen neisseria2 meningitidis

Phyre2

PDB 3pcc chain M

3D model

Region: 271 - 309
Aligned: 39
Modelled: 39
Confidence: 76.6%
Identity: 41%
Fold: Prealbumin-like
Superfamily: Aromatic compound dioxygenase
Family: Aromatic compound dioxygenase

Phyre2

PDB 1z5h chain B

3D model

Region: 1303 - 1465
Aligned: 141
Modelled: 142
Confidence: 75.7%
Identity: 13%
PDB header:hydrolase
Chain: B: PDB Molecule:tricorn protease interacting factor f3;
PDBTitle: crystal structures of the tricorn interacting factor f32 from thermoplasma acidophilum

Phyre2

PDB 2azq chain A

3D model

Region: 241 - 309
Aligned: 69
Modelled: 69
Confidence: 74.9%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2-dioxygenase;
PDBTitle: crystal structure of catechol 1,2-dioxygenase from pseudomonas arvilla2 c-1

Phyre2

PDB 2bur chain B domain 1

3D model

Region: 237 - 309
Aligned: 73
Modelled: 73
Confidence: 74.3%
Identity: 25%
Fold: Prealbumin-like
Superfamily: Aromatic compound dioxygenase
Family: Aromatic compound dioxygenase

Phyre2

PDB 3n9t chain A

3D model

Region: 226 - 309
Aligned: 76
Modelled: 84
Confidence: 71.8%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:pnpc;
PDBTitle: cryatal structure of hydroxyquinol 1,2-dioxygenase from pseudomonas2 putida dll-e4

Phyre2

PDB 1v06 chain A

3D model

Region: 1129 - 1184
Aligned: 51
Modelled: 56
Confidence: 70.2%
Identity: 18%
PDB header:dna-binding protein
Chain: A: PDB Molecule:hmg box-containing protein 1;
PDBTitle: axh domain of the transcription factor hbp1 from m.musculus

Phyre2

PDB 3hj8 chain A

3D model

Region: 247 - 309
Aligned: 63
Modelled: 62
Confidence: 60.6%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2-dioxygenase;
PDBTitle: crystal structure determination of catechol 1,2-dioxygenase from2 rhodococcus opacus 1cp in complex with 4-chlorocatechol

Phyre2

PDB 3se6 chain A

3D model

Region: 1215 - 1465
Aligned: 215
Modelled: 237
Confidence: 58.7%
Identity: 11%
PDB header:hydrolase
Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 2;
PDBTitle: crystal structure of the human endoplasmic reticulum aminopeptidase 2

Phyre2

PDB 2bur chain A domain 1

3D model

Region: 268 - 309
Aligned: 42
Modelled: 42
Confidence: 58.1%
Identity: 33%
Fold: Prealbumin-like
Superfamily: Aromatic compound dioxygenase
Family: Aromatic compound dioxygenase

Phyre2

PDB 1tmx chain A

3D model

Region: 247 - 309
Aligned: 63
Modelled: 63
Confidence: 56.8%
Identity: 19%
PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxyquinol 1,2-dioxygenase;
PDBTitle: crystal structure of hydroxyquinol 1,2-dioxygenase from2 nocardioides simplex 3e

Phyre2

PDB 1yqe chain A domain 1

3D model

Region: 842 - 913
Aligned: 58
Modelled: 58
Confidence: 55.5%
Identity: 19%
Fold: Phosphorylase/hydrolase-like
Superfamily: AF0625-like
Family: AF0625-like

Phyre2

PDB 1bqb chain A

3D model

Region: 1227 - 1307
Aligned: 66
Modelled: 81
Confidence: 51.7%
Identity: 21%
Fold: Zincin-like
Superfamily: Metalloproteases ("zincins"), catalytic domain
Family: Thermolysin-like

Phyre2
1

c3b37A_
2

c3ebhA_
3

c2boyC_
4

c2xsuA_
5

c2xdtA_
6

d1s9aa_
7

c3rhtB_
8

c2gtqA_
9

d3pccm_
10

c1z5hB_
11

c2azqA_
12

d2burb1
13

c3n9tA_
14

c1v06A_
15

c3hj8A_
16

c3se6A_
17

d2bura1
18

c1tmxA_
19

d1yqea1
20

d1bqba_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3b37A_



88.4 15 PDB header:hydrolase
Chain: A: PDB Molecule:aminopeptidase n;
PDBTitle: crystal structure of e. coli aminopeptidase n in complex with tyrosine
2c3ebhA_



85.6 12 PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:m1 family aminopeptidase;
PDBTitle: structure of the m1 alanylaminopeptidase from malaria complexed with2 bestatin
3c2boyC_



84.8 26 PDB header:oxidoreductase
Chain: C: PDB Molecule:3-chlorocatechol 1,2-dioxygenase;
PDBTitle: crystal structure of 3-chlorocatechol 1,2-dioxygenase from2 rhodococcus opacus 1cp
4c2xsuA_



82.9 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2 dioxygenase;
PDBTitle: crystal structure of the a72g mutant of acinetobacter2 radioresistens catechol 1,2 dioxygenase
5c2xdtA_



82.6 13 PDB header:hydrolase
Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 1;
PDBTitle: crystal structure of the soluble domain of human2 endoplasmic reticulum aminopeptidase 1 erap1
6d1s9aa_



81.1 24 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
7c3rhtB_



79.5 14 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:(gatase1)-like protein;
PDBTitle: crystal structure of type 1 glutamine amidotransferase (gatase1)-like2 protein from planctomyces limnophilus
8c2gtqA_



79.2 13 PDB header:hydrolase
Chain: A: PDB Molecule:aminopeptidase n;
PDBTitle: crystal structure of aminopeptidase n from human pathogen neisseria2 meningitidis
9d3pccm_



76.6 41 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
10c1z5hB_



75.7 13 PDB header:hydrolase
Chain: B: PDB Molecule:tricorn protease interacting factor f3;
PDBTitle: crystal structures of the tricorn interacting factor f32 from thermoplasma acidophilum
11c2azqA_



74.9 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2-dioxygenase;
PDBTitle: crystal structure of catechol 1,2-dioxygenase from pseudomonas arvilla2 c-1
12d2burb1



74.3 25 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
13c3n9tA_



71.8 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:pnpc;
PDBTitle: cryatal structure of hydroxyquinol 1,2-dioxygenase from pseudomonas2 putida dll-e4
14c1v06A_



70.2 18 PDB header:dna-binding protein
Chain: A: PDB Molecule:hmg box-containing protein 1;
PDBTitle: axh domain of the transcription factor hbp1 from m.musculus
15c3hj8A_



60.6 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2-dioxygenase;
PDBTitle: crystal structure determination of catechol 1,2-dioxygenase from2 rhodococcus opacus 1cp in complex with 4-chlorocatechol
16c3se6A_



58.7 11 PDB header:hydrolase
Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 2;
PDBTitle: crystal structure of the human endoplasmic reticulum aminopeptidase 2
17d2bura1



58.1 33 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
18c1tmxA_



56.8 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxyquinol 1,2-dioxygenase;
PDBTitle: crystal structure of hydroxyquinol 1,2-dioxygenase from2 nocardioides simplex 3e
19d1yqea1



55.5 19 Fold:Phosphorylase/hydrolase-like
Superfamily:AF0625-like
Family:AF0625-like
20d1bqba_



51.7 21 Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Thermolysin-like
21c3nqzB_



not modelled 51.1 20 PDB header:hydrolase
Chain: B: PDB Molecule:secreted metalloprotease mcp02;
PDBTitle: crystal structure of the autoprocessed vibriolysin mcp-02 with e369a2 mutation
22d1npca_



not modelled 51.0 22 Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Thermolysin-like
23c3mdjB_



not modelled 50.5 13 PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:endoplasmic reticulum aminopeptidase 1;
PDBTitle: er aminopeptidase, erap1, bound to the zinc aminopeptidase inhibitor,2 bestatin
24c3nqxA_



not modelled 48.1 20 PDB header:hydrolase
Chain: A: PDB Molecule:secreted metalloprotease mcp02;
PDBTitle: crystal structure of vibriolysin mcp-02 mature enzyme, a zinc2 metalloprotease from m4 family
25c3qnfA_



not modelled 48.0 12 PDB header:hydrolase
Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 1;
PDBTitle: crystal structure of the open state of human endoplasmic reticulum2 aminopeptidase 1 erap1
26c1slmA_



not modelled 45.8 34 PDB header:hydrolase
Chain: A: PDB Molecule:stromelysin-1;
PDBTitle: crystal structure of fibroblast stromelysin-1: the c-truncated human2 proenzyme
27d1cc5a_



not modelled 44.4 6 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
28c1w5cT_



not modelled 43.4 35 PDB header:photosynthesis
Chain: T: PDB Molecule:cytochrome c-550;
PDBTitle: photosystem ii from thermosynechococcus elongatus
29d1kjpa_



not modelled 43.2 26 Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Thermolysin-like
30c2vqxA_



not modelled 42.9 20 PDB header:hydrolase
Chain: A: PDB Molecule:metalloproteinase;
PDBTitle: precursor of protealysin, metalloproteinase from serratia2 proteamaculans.
31d1kx7a_



not modelled 41.5 20 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
32d2gk3a1



not modelled 41.2 23 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:STM3548-like
33c2c1dB_



not modelled 39.6 35 PDB header:oxidoreductase
Chain: B: PDB Molecule:soxx;
PDBTitle: crystal structure of soxxa from p. pantotrophus
34d2j44a2



not modelled 39.2 24 Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:PUD-like
35c3sozC_



not modelled 38.4 18 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:cytoplasmic protein stm1381;
PDBTitle: cytoplasmic protein stm1381 from salmonella typhimurium lt2
36c1w2lA_



not modelled 36.4 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome oxidase subunit ii;
PDBTitle: cytochrome c domain of caa3 oxygen oxidoreductase
37d1g9ka2



not modelled 35.3 26 Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Serralysin-like metalloprotease, catalytic (N-terminal) domain
38d2iqha1



not modelled 35.0 15 Fold:Flu NP-like
Superfamily:flu NP-like
Family:Flu NP-like
39d1h32b_



not modelled 35.0 21 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
40d1a56a_



not modelled 34.7 13 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
41d1hroa_



not modelled 34.3 38 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
42d1qwta_



not modelled 34.1 30 Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:Interferon regulatory factor 3 (IRF3), transactivation domain
43c1om8A_



not modelled 32.5 20 PDB header:hydrolase
Chain: A: PDB Molecule:serralysin;
PDBTitle: crystal structure of a cold adapted alkaline protease from pseudomonas2 tac ii 18, co-crystallyzed with 10 mm edta
44c1r8oA_



not modelled 32.3 50 PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:kunitz trypsin inhibitor;
PDBTitle: crystal structure of an unusual kunitz-type trypsin inhibitor from2 copaifera langsdorffii seeds
45d3pcca_



not modelled 31.3 29 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
46d2j43a1



not modelled 31.2 32 Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:PUD-like
47d1kb0a1



not modelled 31.0 38 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinoprotein alcohol dehydrogenase, C-terminal domain
48d1t0ba_



not modelled 30.8 6 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:ThuA-like
49c1xi4D_



not modelled 30.8 22 PDB header:endocytosis/exocytosis
Chain: D: PDB Molecule:clathrin heavy chain;
PDBTitle: clathrin d6 coat
50d1dmha_



not modelled 30.5 22 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
51d1h3ga2



not modelled 30.4 19 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
52c2kp6A_



not modelled 30.0 32 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of protein cv0237 from2 chromobacterium violaceum. northeast structural genomics3 consortium (nesg) target cvt1
53c3e8vA_



not modelled 29.2 26 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:possible transglutaminase-family protein;
PDBTitle: crystal structure of a possible transglutaminase-family2 protein proteolytic fragment from bacteroides fragilis
54d1mz4a_



not modelled 29.0 20 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
55d1f1fa_



not modelled 29.0 22 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
56d1lfma_



not modelled 27.9 31 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
57d1cxca_



not modelled 27.7 24 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
58d1yb3a1



not modelled 27.4 35 Fold:YktB/PF0168-like
Superfamily:YktB/PF0168-like
Family:PF0168-like
59d1ccra_



not modelled 27.4 50 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
60c2gfqC_



not modelled 27.3 18 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:upf0204 protein ph0006;
PDBTitle: structure of protein of unknown function ph0006 from pyrococcus2 horikoshii
61d1u4ga_



not modelled 27.3 19 Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Thermolysin-like
62d1kapp2



not modelled 26.8 26 Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Serralysin-like metalloprotease, catalytic (N-terminal) domain
63c2rjqA_



not modelled 26.6 14 PDB header:hydrolase
Chain: A: PDB Molecule:adamts-5;
PDBTitle: crystal structure of adamts5 with inhibitor bound
64d1rqpa1



not modelled 26.6 15 Fold:Bacterial fluorinating enzyme, C-terminal domain
Superfamily:Bacterial fluorinating enzyme, C-terminal domain
Family:Bacterial fluorinating enzyme, C-terminal domain
65d1cota_



not modelled 26.5 22 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
66d1h8la1



not modelled 25.8 18 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
67c2h5gA_



not modelled 24.9 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:delta 1-pyrroline-5-carboxylate synthetase;
PDBTitle: crystal structure of human pyrroline-5-carboxylate synthetase
68d1m70a2



not modelled 24.8 36 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
69c2zonG_



not modelled 24.3 13 PDB header:oxidoreductase/electron transport
Chain: G: PDB Molecule:cytochrome c551;
PDBTitle: crystal structure of electron transfer complex of nitrite2 reductase with cytochrome c
70c2lb0A_



not modelled 23.9 14 PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a di-2 phosphorylated human smad1 derived peptide
71c2lazA_



not modelled 23.7 14 PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a2 mono-phosphorylated human smad1 derived peptide
72d1nkga1



not modelled 23.5 16 Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:Rhamnogalacturonase B, RhgB, middle domain
73c2zzsW_



not modelled 23.4 33 PDB header:electron transport
Chain: W: PDB Molecule:
PDBTitle: crystal structure of cytochrome c554 from vibrio2 parahaemolyticus strain rimd2210633
74c2v4bB_



not modelled 23.4 15 PDB header:hydrolase
Chain: B: PDB Molecule:adamts-1;
PDBTitle: crystal structure of human adamts-1 catalytic domain and2 cysteine-rich domain (apo-form)
75c2j83B_



not modelled 23.1 25 PDB header:hydrolase
Chain: B: PDB Molecule:ulilysin;
PDBTitle: ulilysin metalloprotease in complex with batimastat.
76c2zxyA_



not modelled 22.9 13 PDB header:oxygen binding, transport protein
Chain: A: PDB Molecule:cytochrome c552;
PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus
77d3c2ca_



not modelled 22.8 25 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
78d1jb7b_



not modelled 22.8 23 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
79d2j43a2



not modelled 22.4 24 Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:PUD-like
80c1su3A_



not modelled 22.2 27 PDB header:hydrolase
Chain: A: PDB Molecule:interstitial collagenase;
PDBTitle: x-ray structure of human prommp-1: new insights into2 collagenase action
81d1i8oa_



not modelled 22.0 31 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
82d1m70a1



not modelled 21.6 40 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
83c1wgzC_



not modelled 21.6 21 PDB header:hydrolase
Chain: C: PDB Molecule:carboxypeptidase 1;
PDBTitle: crystal structure of carboxypeptidase 1 from thermus thermophilus
84c1uwyA_



not modelled 21.5 18 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m
85c2o1wB_



not modelled 21.2 23 PDB header:chaperone
Chain: B: PDB Molecule:endoplasmin;
PDBTitle: structure of n-terminal plus middle domains (n+m) of grp94
86d1c6sa_



not modelled 21.1 31 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
87d1j3sa_



not modelled 20.7 40 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
88c1cwvA_



not modelled 20.6 33 PDB header:structural protein
Chain: A: PDB Molecule:invasin;
PDBTitle: crystal structure of invasin: a bacterial integrin-binding protein
89d1dy7b1



not modelled 20.4 25 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
90c1otcB_



not modelled 20.4 23 PDB header:protein/dna
Chain: B: PDB Molecule:protein (telomere-binding protein beta subunit);
PDBTitle: the o. nova telomere end binding protein complexed with2 single strand dna
91d1c52a_



not modelled 20.3 7 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
92c2i47A_



not modelled 20.1 71 PDB header:hydrolase
Chain: A: PDB Molecule:adam 17;
PDBTitle: crystal structure of catalytic domain of tace with inhibitor
93d2i47a1



not modelled 20.1 71 Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:TNF-alpha converting enzyme, TACE, catalytic domain
94d1fi3a_



not modelled 20.0 13 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
95c3evpA_



not modelled 19.8 22 PDB header:signaling protein
Chain: A: PDB Molecule:circular-permutated green fluorescent protein;
PDBTitle: crystal structure of circular-permutated egfp
96d1ql3a_



not modelled 19.7 38 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
97d1h9xa1



not modelled 19.6 25 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
98d1e29a_



not modelled 19.5 27 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
99c2d0sA_



not modelled 19.5 13 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0