PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1jb7b_

Fold library id	Fold	Superfamily	Family
d1jb7b_	OB-fold	Nucleic acid-binding proteins	Single strand DNA-binding domain, SSB

Links to external resources
Added to library: Tue Mar 16 12:33:23 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q Q Q S A F K Q L Y T E L F N N E G D F S K V S S N L K K P L K C Y V K E S Y P H F L V T D G Y F F V A P Y F T K E A V N E F H A K F P N V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
G G G S
G G G
S
S S S
S S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N I V D L T D K V I V I N N W S L E L R R V N S A E V F T S Y A N L E A R L I V H S F K P N L Q E R L N P T R Y P V N L F R D D E F K T T I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
T T
T T T
S S
B T T T T
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q H F R H T A L Q A A I N K T V K G D N L V D I S K V A D A A G K K G K V D A G I V K A S A S K G D E F S D F S F K E G N T A T L K I A D I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S T T S
G G G G
S
S S S S
S

. . . . . .

Sequence F V Q E K G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	Q	Q	S	A	F	K	Q	L	Y	T	E	L	F	N	N	E	G	D	F	S	K	V	S	S	N	L	K	K	P	L	K	C	Y	V	K	E	S	Y	P	H	F	L	V	T	D	G	Y	F	F	V	A	P	Y	F	T	K	E	A	V	N	E	F	H	A	K	F	P	N	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T	T		G	G	G	S		G	G	G		S										S	S	S					S	S	S																				T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	I	V	D	L	T	D	K	V	I	V	I	N	N	W	S	L	E	L	R	R	V	N	S	A	E	V	F	T	S	Y	A	N	L	E	A	R	L	I	V	H	S	F	K	P	N	L	Q	E	R	L	N	P	T	R	Y	P	V	N	L	F	R	D	D	E	F	K	T	T	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G		T	T																	T	T	T		S	S		B	T	T														T	T												G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	H	F	R	H	T	A	L	Q	A	A	I	N	K	T	V	K	G	D	N	L	V	D	I	S	K	V	A	D	A	A	G	K	K	G	K	V	D	A	G	I	V	K	A	S	A	S	K	G	D	E	F	S	D	F	S	F	K	E	G	N	T	A	T	L	K	I	A	D	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		S										S	S	T	T	S					G	G	G	G					S			S	S	S	S						S
	.	.	.	.	.	.
Sequence	F	V	Q	E	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)