Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	D	L	L	C	S	A	K	L	G	A	M	T	L	A	L	L	L	S	A	T	S	L	S	A	L	A	S	V	T	P	D	R	T	R	L	I	F	N	E	S	D	K	S	I	S	V	T	L	R	N	N	D	P	K	L	P	Y	L
Secondary structure
SS confidence
Disorder		?																								?	?	?	?	?			?	?									?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	Q	S	W	I	E	D	E	K	G	N	K	I	T	S	P	L	T	V	L	P	P	V	Q	R	I	D	S	M	M	N	G	Q	V	K	V	Q	G	M	P	D	I	N	K	L	P	A	D	R	E	S	M	F	Y	F	N	V	R	E	I
Secondary structure
SS confidence
Disorder								?	?	?	?	?	?	?	?								?						?				?							?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	P	K	S	N	K	P	N	T	L	Q	I	A	L	Q	T	R	I	K	L	F	W	R	P	K	A	L	E	K	V	S	M	K	S	P	W	Q	H	K	V	T	L	T	R	S	G	Q	A	F	T	V	N	N	P	T	P	Y	Y	V	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?																			?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	S	N	A	S	A	Q	K	N	G	N	P	A	A	G	F	S	P	L	V	I	E	P	K	T	T	V	P	L	N	V	K	M	D	S	V	P	V	L	T	Y	V	N	D	F	G	A	R	M	P	L	F	F	Q	C	N	G	N	S	C
Secondary structure
SS confidence
Disorder								?	?	?	?	?	?	?	?	?	?	?	?	?						?	?					?		?																									?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250
Sequence		Q	V	D	E	E	Q	S	R	K	G
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1qpx chain A Region: 29 - 243 Aligned: 205 Modelled: 215 Confidence: 100.0% Identity: 42% PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers Phyre2 PDB 1qun chain A Region: 29 - 232 Aligned: 192 Modelled: 204 Confidence: 100.0% Identity: 32% PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli Phyre2 PDB 2co7 chain B Region: 25 - 235 Aligned: 195 Modelled: 211 Confidence: 100.0% Identity: 22% PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) Phyre2 PDB 1z9s chain A Region: 25 - 234 Aligned: 193 Modelled: 210 Confidence: 100.0% Identity: 26% PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex Phyre2 PDB 1l4i chain A Region: 29 - 232 Aligned: 185 Modelled: 199 Confidence: 100.0% Identity: 32% PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae Phyre2 PDB 3f6i chain B Region: 29 - 232 Aligned: 182 Modelled: 204 Confidence: 100.0% Identity: 26% PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee Phyre2 PDB 3q48 chain B Region: 31 - 235 Aligned: 182 Modelled: 205 Confidence: 100.0% Identity: 29% PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone Phyre2 PDB 2j2z chain A domain 1 Region: 29 - 151 Aligned: 123 Modelled: 123 Confidence: 100.0% Identity: 54% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 3bwu chain C domain 1 Region: 29 - 148 Aligned: 116 Modelled: 120 Confidence: 100.0% Identity: 37% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 1p5v chain A domain 1 Region: 25 - 147 Aligned: 110 Modelled: 123 Confidence: 100.0% Identity: 32% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 2co7 chain B domain 1 Region: 25 - 147 Aligned: 116 Modelled: 123 Confidence: 100.0% Identity: 25% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 1l4i chain A domain 1 Region: 29 - 147 Aligned: 112 Modelled: 119 Confidence: 100.0% Identity: 37% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 2j2z chain A domain 2 Region: 153 - 244 Aligned: 92 Modelled: 92 Confidence: 99.9% Identity: 28% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1p5v chain A domain 2 Region: 148 - 235 Aligned: 78 Modelled: 88 Confidence: 99.7% Identity: 17% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 3bwu chain C domain 2 Region: 150 - 232 Aligned: 76 Modelled: 83 Confidence: 99.7% Identity: 24% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 2co7 chain B domain 2 Region: 148 - 230 Aligned: 74 Modelled: 83 Confidence: 99.7% Identity: 18% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1l4i chain A domain 2 Region: 150 - 230 Aligned: 69 Modelled: 76 Confidence: 99.6% Identity: 26% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1m1s chain A Region: 27 - 117 Aligned: 82 Modelled: 91 Confidence: 96.0% Identity: 11% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 1row chain A Region: 30 - 117 Aligned: 79 Modelled: 88 Confidence: 95.1% Identity: 13% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 1grw chain A Region: 27 - 144 Aligned: 111 Modelled: 118 Confidence: 94.8% Identity: 12% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 1 c1qpxA_ 2 c1qunA_ 3 c2co7B_ 4 c1z9sA_ 5 c1l4iA_ 6 c3f6iB_ 7 c3q48B_ 8 d2j2za1 9 d3bwuc1 10 d1p5va1 11 d2co7b1 12 d1l4ia1 13 d2j2za2 14 d1p5va2 15 d3bwuc2 16 d2co7b2 17 d1l4ia2 18 d1m1sa_ 19 d1rowa_ 20 d1grwa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1qpxA_ 100.0 42 PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers 2 c1qunA_ 100.0 32 PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli 3 c2co7B_ 100.0 22 PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) 4 c1z9sA_ 100.0 26 PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex 5 c1l4iA_ 100.0 32 PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae 6 c3f6iB_ 100.0 26 PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee 7 c3q48B_ 100.0 29 PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone 8 d2j2za1 100.0 54 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 9 d3bwuc1 100.0 37 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 10 d1p5va1 100.0 32 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 11 d2co7b1 100.0 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 12 d1l4ia1 100.0 37 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 13 d2j2za2 99.9 28 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 14 d1p5va2 99.7 17 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 15 d3bwuc2 99.7 24 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 16 d2co7b2 99.7 18 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 17 d1l4ia2 99.6 26 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 18 d1m1sa_ 96.0 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 19 d1rowa_ 95.1 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 20 d1grwa_ 94.8 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 21 c2qsvA_ not modelled 94.2 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83 22 c1z9oB_ not modelled 94.1 17 PDB header:protein binding/lipid binding protein Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif 23 d1mspa_ not modelled 93.9 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 24 c3qisA_ not modelled 92.8 15 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: recognition of the f&h motif by the lowe syndrome protein ocrl 25 c2e6jA_ not modelled 91.9 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydin protein; PDBTitle: solution structure of the c-terminal papd-like domain from2 human hydin protein 26 d1e42a1 not modelled 83.3 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Clathrin adaptor appendage domain Family:Alpha-adaptin ear subdomain-like 27 c2ys4A_ not modelled 80.5 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydrocephalus-inducing protein homolog; PDBTitle: solution structure of the n-terminal papd-like domain of2 hydin protein from human 28 c3qbtH_ not modelled 80.5 12 PDB header:protein transport/hydrolase Chain: H: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: crystal structure of ocrl1 540-678 in complex with rab8a:gppnhp 29 c3ac0B_ not modelled 74.2 14 PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose 30 d2vzsa2 not modelled 69.8 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 31 d1hfua2 not modelled 67.7 11 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 32 d1wica_ not modelled 67.1 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 33 c1e42A_ not modelled 65.2 15 PDB header:endocytosis Chain: A: PDB Molecule:ap-2 complex subunit beta; PDBTitle: beta2-adaptin appendage domain, from clathrin adaptor ap2 34 c2qvkA_ not modelled 62.4 8 PDB header:metal binding protein Chain: A: PDB Molecule:sodium/calcium exchanger 1; PDBTitle: the second ca2+-binding domain of the na+-ca2+ exchanger is2 essential for regulation: crystal structures and3 mutational analysis 35 c1yycA_ not modelled 54.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative late embryogenesis abundant protein; PDBTitle: solution structure of a putative late embryogenesis2 abundant (lea) protein at2g46140.1 36 c3eujB_ not modelled 51.8 25 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, symmetric dimer 37 d2fwua1 not modelled 48.4 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain 38 d1w8oa1 not modelled 42.8 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 39 d1aoza2 not modelled 42.4 3 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 40 c3h6aB_ not modelled 42.3 6 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-4; PDBTitle: structure of the calx-beta domain of integrin beta42 crystallized in the presence of calcium 41 c2x41A_ not modelled 41.7 11 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose 42 d1k3ra1 not modelled 40.6 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Hypothetical protein MTH1 (MT0001), insert domain 43 d1v10a2 not modelled 40.6 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 44 c2oxgE_ not modelled 39.3 11 PDB header:transport protein Chain: E: PDB Molecule:soxz protein; PDBTitle: the soxyz complex of paracoccus pantotrophus 45 c3ts3D_ not modelled 32.4 27 PDB header:viral protein Chain: D: PDB Molecule:capsid polyprotein; PDBTitle: crystal structure of the projection domain of the turkey astrovirus2 capsid protein at 1.5 angstrom resolution 46 c3ginB_ not modelled 31.2 6 PDB header:metal binding protein Chain: B: PDB Molecule:sodium/calcium exchanger 1; PDBTitle: crystal structure of e454k-cbd1 47 d1gyca2 not modelled 29.5 10 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 48 d4ubpb_ not modelled 28.2 13 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 49 c3rb7E_ not modelled 27.0 6 PDB header:metal binding protein Chain: E: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of cbd12 from calx1.2 50 d1kyaa2 not modelled 26.9 11 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 51 d2dpka1 not modelled 26.6 8 Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain 52 c3o0lB_ not modelled 25.0 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution 53 c1wkwB_ not modelled 24.0 44 PDB header:translation/protein binding Chain: B: PDB Molecule:eukaryotic translation initiation factor 4e PDBTitle: crystal structure of the ternary complex of eif4e-m7gpppa-2 4ebp1 peptide 54 d1e9ya1 not modelled 22.1 17 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 55 d1v8ha1 not modelled 21.0 8 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:SoxZ-like 56 c2qziA_ not modelled 19.1 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a conserved protein of unknown function from2 streptococcus thermophilus lmg 18311. 57 c3butA_ not modelled 18.8 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein af_0446; PDBTitle: crystal structure of protein af_0446 from archaeoglobus fulgidus 58 d2q9oa2 not modelled 17.2 10 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 59 c1e9zA_ not modelled 16.9 17 PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease 60 d1ejxb_ not modelled 16.6 12 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 61 d1ufga_ not modelled 16.3 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 62 c3jt0B_ not modelled 16.0 12 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of the c-terminal fragment (426-558)2 lamin-b1 from homo sapiens, northeast structural genomics3 consortium target hr5546a 63 c2lllA_ not modelled 13.6 15 PDB header:structural protein Chain: A: PDB Molecule:lamin-b2; PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a 64 d1ifra_ not modelled 12.3 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 65 c3qgaD_ not modelled 12.3 18 PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae 66 c3e9uA_ not modelled 11.9 4 PDB header:membrane protein Chain: A: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of calx cbd2 domain 67 c3rfrI_ not modelled 11.5 15 PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m 68 c3e9tD_ not modelled 10.8 8 PDB header:membrane protein Chain: D: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of apo-form calx cbd1 domain 69 d1r7aa1 not modelled 10.8 27 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 70 c2z4dA_ not modelled 10.7 13 PDB header:nuclear protein Chain: A: PDB Molecule:26s proteasome regulatory subunit rpn13; PDBTitle: nmr structures of yeast proteasome component rpn13 71 c2frgP_ not modelled 10.6 14 PDB header:immune system Chain: P: PDB Molecule:trem-like transcript-1; PDBTitle: structure of the immunoglobulin-like domain of human tlt-1 72 d2huha1 not modelled 9.4 27 Fold:C2 domain-like Superfamily:Smr-associated domain-like Family:Smr-associated domain 73 d1xo8a_ not modelled 9.3 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:LEA14-like Family:LEA14-like 74 c2phgB_ not modelled 8.9 17 PDB header:transcription Chain: B: PDB Molecule:alpha trans-inducing protein; PDBTitle: model for vp16 binding to tfiib 75 d1u00a2 not modelled 8.9 17 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain Family:Heat shock protein 70kD (HSP70), peptide-binding domain 76 c2pheC_ not modelled 8.5 17 PDB header:transcription Chain: C: PDB Molecule:alpha trans-inducing protein; PDBTitle: model for vp16 binding to pc4 77 d1eg3a3 not modelled 7.6 50 Fold:WW domain-like Superfamily:WW domain Family:WW domain 78 d2f7fa1 not modelled 7.5 50 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 79 c3k6sB_ not modelled 7.4 14 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-2; PDBTitle: structure of integrin alphaxbeta2 ectodomain 80 c3hzpA_ not modelled 7.2 57 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntf2-like protein of unknown function; PDBTitle: crystal structure of ntf2-like protein of unknown function mn2a_05052 from prochlorococcus marinus (yp_291699.1) from prochlorococcus sp.3 natl2a at 1.40 a resolution 81 d2o2aa1 not modelled 7.1 12 Fold:SecB-like Superfamily:SecB-like Family:SP1558-like 82 d1ivta_ not modelled 6.8 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 83 c3dqgC_ not modelled 6.4 13 PDB header:chaperone Chain: C: PDB Molecule:heat shock 70 kda protein f; PDBTitle: peptide-binding domain of heat shock 70 kda protein f, mitochondrial2 precursor, from caenorhabditis elegans. 84 d1nyna_ not modelled 6.1 23 Fold:FYSH domain Superfamily:FYSH domain Family:Hypothetical protein Yhr087W 85 c3fyfA_ not modelled 6.1 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein bvu-3222; PDBTitle: crystal structure of uncharacterized protein bvu_3222 from2 bacteroides vulgatus 86 c3of6D_ not modelled 5.8 24 PDB header:immune system Chain: D: PDB Molecule:pre t-cell antigen receptor alpha; PDBTitle: human pre-t cell receptor crystal structure 87 c2l3bA_ not modelled 5.6 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein found in conjugate transposon; PDBTitle: solution nmr structure of the bt_0084 lipoprotein from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr376 88 c3smuD_ not modelled 5.5 50 PDB header:translation Chain: D: PDB Molecule:eukaryotic translation initiation factor 4e-binding protein PDBTitle: crystal structure of the human eif4e-4ebp1 peptide complex without cap 89 c3u7xC_ not modelled 5.5 50 PDB header:translation Chain: C: PDB Molecule:eukaryotic translation initiation factor 4e-binding protein PDBTitle: crystal structure of the human eif4e-4ebp1 peptide complex without cap 90 c3smuC_ not modelled 5.5 50 PDB header:translation Chain: C: PDB Molecule:eukaryotic translation initiation factor 4e-binding protein PDBTitle: crystal structure of the human eif4e-4ebp1 peptide complex without cap 91 c3u7xD_ not modelled 5.5 50 PDB header:translation Chain: D: PDB Molecule:eukaryotic translation initiation factor 4e-binding protein PDBTitle: crystal structure of the human eif4e-4ebp1 peptide complex without cap 92 c2vzvB_ not modelled 5.4 11 PDB header:hydrolase Chain: B: PDB Molecule:exo-beta-d-glucosaminidase; PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan 93 d1dkza2 not modelled 5.4 19 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain Family:Heat shock protein 70kD (HSP70), peptide-binding domain 94 d1x9la_ not modelled 5.4 21 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:DR1885-like metal-binding protein Family:DR1885-like metal-binding protein 95 c1u00A_ not modelled 5.3 17 PDB header:chaperone Chain: A: PDB Molecule:chaperone protein hsca; PDBTitle: hsca substrate binding domain complexed with the iscu2 recognition peptide elppvkihc 96 c3czuB_ not modelled 5.3 50 PDB header:transferase/signaling protein Chain: B: PDB Molecule:ephrin-a1; PDBTitle: crystal structure of the human ephrin a2- ephrin a1 complex 97 d1pkoa_ not modelled 5.2 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 98 d2olra1 not modelled 5.2 35 Fold:PEP carboxykinase-like Superfamily:PEP carboxykinase-like Family:PEP carboxykinase C-terminal domain 99 d2vj0a1 not modelled 5.1 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:Clathrin adaptor appendage domain Family:Alpha-adaptin ear subdomain-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0