Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Y	K	T	I	I	M	P	V	D	V	F	E	M	E	L	S	D	K	A	V	R	H	A	E	F	L	A	Q	D	D	G	V	I	H	L	L	H	V	L	P	G	S	A	S	L	S	L	H	R	F	A	A	D	V	R	R	F	E	E
Secondary structure
SS confidence
Disorder		?	?																																									?	?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		H	L	Q	H	E	A	Q	E	R	L	Q	T	M	V	S	H	F	T	I	D	P	S	R	I	K	Q	H	V	R	F	G	S	V	R	D	E	V	N	E	L	A	E	E	L	G	A	D	V	V	V	I	G	S	R	N	P	S	I	S	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Sequence		H	L	L	G	S	N	A	S	S	V	I	R	H	A	N	L	P	V	L	V	V	R
Secondary structure
SS confidence
Disorder																			?			?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3hgm chain D Region: 1 - 141 Aligned: 139 Modelled: 141 Confidence: 99.9% Identity: 24% PDB header:signaling protein Chain: D: PDB Molecule:universal stress protein tead; PDBTitle: universal stress protein tead from the trap transporter2 teaabc of halomonas elongata Phyre2 PDB 1mjh chain A Region: 1 - 142 Aligned: 136 Modelled: 142 Confidence: 99.9% Identity: 27% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: Universal stress protein-like Phyre2 PDB 3s3t chain D Region: 1 - 142 Aligned: 140 Modelled: 142 Confidence: 99.9% Identity: 22% PDB header:chaperone Chain: D: PDB Molecule:nucleotide-binding protein, universal stress protein uspa PDBTitle: universal stress protein uspa from lactobacillus plantarum Phyre2 PDB 3dlo chain C Region: 1 - 142 Aligned: 130 Modelled: 134 Confidence: 99.9% Identity: 24% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:universal stress protein; PDBTitle: structure of universal stress protein from archaeoglobus fulgidus Phyre2 PDB 1jmv chain A Region: 1 - 142 Aligned: 136 Modelled: 142 Confidence: 99.9% Identity: 23% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: Universal stress protein-like Phyre2 PDB 3fh0 chain A Region: 3 - 142 Aligned: 122 Modelled: 123 Confidence: 99.9% Identity: 39% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative universal stress protein kpn_01444; PDBTitle: crystal structure of putative universal stress protein kpn_01444 -2 atpase Phyre2 PDB 2z3v chain A domain 1 Region: 2 - 141 Aligned: 133 Modelled: 140 Confidence: 99.9% Identity: 20% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: Universal stress protein-like Phyre2 PDB 3fg9 chain B Region: 2 - 142 Aligned: 132 Modelled: 141 Confidence: 99.9% Identity: 18% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of universal stress protein uspa family; PDBTitle: the crystal structure of an universal stress protein uspa2 family protein from lactobacillus plantarum wcfs1 Phyre2 PDB 2dum chain D Region: 1 - 142 Aligned: 136 Modelled: 142 Confidence: 99.9% Identity: 24% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein ph0823; PDBTitle: crystal structure of hypothetical protein, ph0823 Phyre2 PDB 3idf chain A Region: 3 - 142 Aligned: 136 Modelled: 140 Confidence: 99.9% Identity: 21% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:usp-like protein; PDBTitle: the crystal structure of a usp-like protein from wolinella2 succinogenes to 2.0a Phyre2 PDB 2pfs chain A Region: 1 - 142 Aligned: 121 Modelled: 142 Confidence: 99.9% Identity: 30% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea Phyre2 PDB 2gm3 chain A domain 1 Region: 3 - 142 Aligned: 129 Modelled: 125 Confidence: 99.9% Identity: 16% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: Universal stress protein-like Phyre2 PDB 1tq8 chain A Region: 1 - 142 Aligned: 121 Modelled: 123 Confidence: 99.9% Identity: 26% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: Universal stress protein-like Phyre2 PDB 1q77 chain A Region: 2 - 142 Aligned: 131 Modelled: 140 Confidence: 99.8% Identity: 20% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: Universal stress protein-like Phyre2 PDB 3loq chain A Region: 2 - 142 Aligned: 118 Modelled: 120 Confidence: 99.8% Identity: 25% PDB header:structure genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: the crystal structure of a universal stress protein from2 archaeoglobus fulgidus dsm 4304 Phyre2 PDB 3olq chain A Region: 2 - 142 Aligned: 138 Modelled: 141 Confidence: 99.8% Identity: 11% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein e; PDBTitle: the crystal structure of a universal stress protein e from proteus2 mirabilis hi4320 Phyre2 PDB 3mt0 chain A Region: 2 - 142 Aligned: 118 Modelled: 117 Confidence: 99.7% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pa1789; PDBTitle: the crystal structure of a functionally unknown protein pa1789 from2 pseudomonas aeruginosa pao1 Phyre2 PDB 2jax chain A Region: 1 - 142 Aligned: 135 Modelled: 142 Confidence: 99.7% Identity: 21% PDB header:protein binding Chain: A: PDB Molecule:hypothetical protein tb31.7; PDBTitle: universal stress protein rv2623 from mycobaterium2 tuberculosis Phyre2 PDB 3ab8 chain B Region: 2 - 142 Aligned: 114 Modelled: 119 Confidence: 99.6% Identity: 21% PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein ttha0350; PDBTitle: crystal structure of the hypothetical tandem-type universal stress2 protein ttha0350 complexed with atps. Phyre2 PDB 1g5q chain A Region: 1 - 37 Aligned: 35 Modelled: 37 Confidence: 84.4% Identity: 14% Fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Phyre2 1 c3hgmD_ 2 d1mjha_ 3 c3s3tD_ 4 c3dloC_ 5 d1jmva_ 6 c3fh0A_ 7 d2z3va1 8 c3fg9B_ 9 c2dumD_ 10 c3idfA_ 11 c2pfsA_ 12 d2gm3a1 13 d1tq8a_ 14 d1q77a_ 15 c3loqA_ 16 c3olqA_ 17 c3mt0A_ 18 c2jaxA_ 19 c3ab8B_ 20 d1g5qa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3hgmD_ 99.9 24 PDB header:signaling protein Chain: D: PDB Molecule:universal stress protein tead; PDBTitle: universal stress protein tead from the trap transporter2 teaabc of halomonas elongata 2 d1mjha_ 99.9 27 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 3 c3s3tD_ 99.9 22 PDB header:chaperone Chain: D: PDB Molecule:nucleotide-binding protein, universal stress protein uspa PDBTitle: universal stress protein uspa from lactobacillus plantarum 4 c3dloC_ 99.9 24 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:universal stress protein; PDBTitle: structure of universal stress protein from archaeoglobus fulgidus 5 d1jmva_ 99.9 23 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 6 c3fh0A_ 99.9 39 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative universal stress protein kpn_01444; PDBTitle: crystal structure of putative universal stress protein kpn_01444 -2 atpase 7 d2z3va1 99.9 20 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 8 c3fg9B_ 99.9 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of universal stress protein uspa family; PDBTitle: the crystal structure of an universal stress protein uspa2 family protein from lactobacillus plantarum wcfs1 9 c2dumD_ 99.9 24 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein ph0823; PDBTitle: crystal structure of hypothetical protein, ph0823 10 c3idfA_ 99.9 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:usp-like protein; PDBTitle: the crystal structure of a usp-like protein from wolinella2 succinogenes to 2.0a 11 c2pfsA_ 99.9 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea 12 d2gm3a1 99.9 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 13 d1tq8a_ 99.9 26 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 14 d1q77a_ 99.8 20 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 15 c3loqA_ 99.8 25 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: the crystal structure of a universal stress protein from2 archaeoglobus fulgidus dsm 4304 16 c3olqA_ 99.8 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein e; PDBTitle: the crystal structure of a universal stress protein e from proteus2 mirabilis hi4320 17 c3mt0A_ 99.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pa1789; PDBTitle: the crystal structure of a functionally unknown protein pa1789 from2 pseudomonas aeruginosa pao1 18 c2jaxA_ 99.7 21 PDB header:protein binding Chain: A: PDB Molecule:hypothetical protein tb31.7; PDBTitle: universal stress protein rv2623 from mycobaterium2 tuberculosis 19 c3ab8B_ 99.6 21 PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein ttha0350; PDBTitle: crystal structure of the hypothetical tandem-type universal stress2 protein ttha0350 complexed with atps. 20 d1g5qa_ 84.4 14 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 21 c2ejbA_ not modelled 60.2 12 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus 22 d2iela1 not modelled 57.8 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 23 d1p3y1_ not modelled 48.2 9 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 24 c3tvsA_ not modelled 41.7 14 PDB header:signaling protein Chain: A: PDB Molecule:cryptochrome-1; PDBTitle: structure of full-length drosophila cryptochrome 25 c3qjgD_ not modelled 41.2 6 PDB header:oxidoreductase Chain: D: PDB Molecule:epidermin biosynthesis protein epid; PDBTitle: epidermin biosynthesis protein epid from staphylococcus aureus 26 c3zquA_ not modelled 36.6 18 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: structure of a probable aromatic acid decarboxylase 27 c2yxbA_ not modelled 34.8 11 PDB header:isomerase Chain: A: PDB Molecule:coenzyme b12-dependent mutase; PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix 28 d1f0ka_ not modelled 26.6 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Peptidoglycan biosynthesis glycosyltransferase MurG 29 c3lqkA_ not modelled 26.5 9 PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase subunit b; PDBTitle: crystal structure of dipicolinate synthase subunit b from bacillus2 halodurans c 30 c1a3wB_ not modelled 19.3 14 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: pyruvate kinase from saccharomyces cerevisiae complexed with fbp, pg,2 mn2+ and k+ 31 c1pklB_ not modelled 19.3 22 PDB header:transferase Chain: B: PDB Molecule:protein (pyruvate kinase); PDBTitle: the structure of leishmania pyruvate kinase 32 c3mcuF_ not modelled 19.1 18 PDB header:oxidoreductase Chain: F: PDB Molecule:dipicolinate synthase, b chain; PDBTitle: crystal structure of the dipicolinate synthase chain b from2 bacillus cereus. northeast structural genomics consortium3 target bcr215. 33 c3dnfB_ not modelled 18.7 10 PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway 34 c3a2kB_ not modelled 18.7 16 PDB header:ligase/rna Chain: B: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils complexed with trna 35 c3e0vB_ not modelled 18.4 22 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pyruvate kinase from leishmania mexicana in2 complex with sulphate ions 36 d1wy5a1 not modelled 18.0 11 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PP-loop ATPase 37 d3clsc1 not modelled 17.8 18 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 38 c1mvlA_ not modelled 16.3 3 PDB header:lyase Chain: A: PDB Molecule:ppc decarboxylase athal3a; PDBTitle: ppc decarboxylase mutant c175s 39 d1mvla_ not modelled 16.3 3 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 40 d1t6aa_ not modelled 15.1 28 Fold:TBP-like Superfamily:Rbstp2229 protein Family:Rbstp2229 protein 41 d1vbka1 not modelled 14.6 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ThiI-like 42 c1t5aB_ not modelled 14.0 11 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase, m2 isozyme; PDBTitle: human pyruvate kinase m2 43 c2vgbB_ not modelled 13.3 14 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase isozymes r/l; PDBTitle: human erythrocyte pyruvate kinase 44 d1lfda_ not modelled 12.9 27 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 45 d1nu0a_ not modelled 12.6 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 46 d1u11a_ not modelled 11.9 18 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 47 d2dbsa1 not modelled 11.6 32 Fold:TTHC002-like Superfamily:TTHC002-like Family:TTHC002-like 48 c2e21A_ not modelled 11.3 11 PDB header:ligase Chain: A: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils in a complex with amppnp from aquifex2 aeolicus. 49 c3g40A_ not modelled 10.9 9 PDB header:transport protein Chain: A: PDB Molecule:na-k-cl cotransporter; PDBTitle: crystal structure of the cytoplasmic domain of a2 prokaryotic cation chloride cotransporter 50 d1sbza_ not modelled 10.5 15 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 51 c2fw9A_ not modelled 10.5 18 PDB header:lyase Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: structure of pure (n5-carboxyaminoimidazole ribonucleotide mutase)2 h59f from the acidophilic bacterium acetobacter aceti, at ph 8 52 c3ma8A_ not modelled 10.3 14 PDB header:transferase Chain: A: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of cgd1_2040, a pyruvate kinase from cryptosporidium2 parvum 53 d1xmpa_ not modelled 10.3 22 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 54 c3lp6D_ not modelled 9.9 15 PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution 55 d1to6a_ not modelled 9.2 19 Fold:Glycerate kinase I Superfamily:Glycerate kinase I Family:Glycerate kinase I 56 d1o4va_ not modelled 9.1 18 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 57 c3orsD_ not modelled 8.8 16 PDB header:isomerase,biosynthetic protein Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus 58 c1aqfB_ not modelled 8.6 14 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: pyruvate kinase from rabbit muscle with mg, k, and l-2 phospholactate 59 c3ke8A_ not modelled 8.5 21 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate PDBTitle: crystal structure of isph:hmbpp-complex 60 c3kh0A_ not modelled 8.5 26 PDB header:signaling protein Chain: A: PDB Molecule:ral guanine nucleotide dissociation stimulator; PDBTitle: crystal structure of the ras-association (ra) domain of2 ralgds 61 d1ulza2 not modelled 8.3 13 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 62 c1ulzA_ not modelled 8.2 13 PDB header:ligase Chain: A: PDB Molecule:pyruvate carboxylase n-terminal domain; PDBTitle: crystal structure of the biotin carboxylase subunit of pyruvate2 carboxylase 63 d1efvb_ not modelled 8.1 17 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 64 c1cf3A_ not modelled 8.0 21 PDB header:oxidoreductase(flavoprotein) Chain: A: PDB Molecule:protein (glucose oxidase); PDBTitle: glucose oxidase from apergillus niger 65 c2wdfA_ not modelled 8.0 13 PDB header:hydrolase Chain: A: PDB Molecule:sulfur oxidation protein soxb; PDBTitle: termus thermophilus sulfate thiohydrolase soxb 66 c2ywxA_ not modelled 7.8 16 PDB header:lyase Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from methanocaldococcus jannaschii 67 c2pjuD_ not modelled 7.8 11 PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr 68 c1ni5A_ not modelled 7.8 11 PDB header:cell cycle Chain: A: PDB Molecule:putative cell cycle protein mesj; PDBTitle: structure of the mesj pp-atpase from escherichia coli 69 d1o94c_ not modelled 7.7 21 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 70 d1nmpa_ not modelled 7.3 14 Fold:NIF3 (NGG1p interacting factor 3)-like Superfamily:NIF3 (NGG1p interacting factor 3)-like Family:NIF3 (NGG1p interacting factor 3)-like 71 d2rgfa_ not modelled 7.3 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 72 c2auhB_ not modelled 7.2 11 PDB header:transferase/signaling protein Chain: B: PDB Molecule:growth factor receptor-bound protein 14; PDBTitle: crystal structure of the grb14 bps region in complex with2 the insulin receptor tyrosine kinase 73 d1qzua_ not modelled 7.2 15 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 74 d1cf3a1 not modelled 7.1 21 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 75 d2j9ga2 not modelled 6.8 14 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 76 d2pjua1 not modelled 6.7 11 Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like 77 d1ni5a1 not modelled 6.6 11 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PP-loop ATPase 78 d1qcza_ not modelled 6.6 22 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 79 d2b3aa1 not modelled 6.6 27 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 80 c2nydB_ not modelled 6.5 17 PDB header:unknown function Chain: B: PDB Molecule:upf0135 protein sa1388; PDBTitle: crystal structure of staphylococcus aureus hypothetical protein sa1388 81 d2g0ta1 not modelled 6.4 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 82 d1gpea1 not modelled 6.1 21 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 83 d1ylqa1 not modelled 5.9 24 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Catalytic subunit of bi-partite nucleotidyltransferase 84 d2a1fa1 not modelled 5.7 12 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 85 c3cwcB_ not modelled 5.6 29 PDB header:transferase Chain: B: PDB Molecule:putative glycerate kinase 2; PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2 86 d1qf6a1 not modelled 5.6 14 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 87 d1vhxa_ not modelled 5.5 19 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 88 d2j07a2 not modelled 5.5 19 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 89 c1gpeA_ not modelled 5.5 18 PDB header:oxidoreductase(flavoprotein) Chain: A: PDB Molecule:protein (glucose oxidase); PDBTitle: glucose oxidase from penicillium amagasakiense 90 d1rlfa_ not modelled 5.5 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 91 c3khdC_ not modelled 5.4 13 PDB header:transferase Chain: C: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pff1300w. 92 d1rvga_ not modelled 5.3 15 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class II FBP aldolase 93 c3u02C_ not modelled 5.3 57 PDB header:transcription Chain: C: PDB Molecule:putative transcription-associated protein tfiis; PDBTitle: crystal structure of the trna modifier tias from pyrococcus furiosus,2 northeast structural genomics consortium target pfr225 94 d2hy5b1 not modelled 5.3 13 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 95 d1vm6a3 not modelled 5.3 20 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 96 d1fmfa_ not modelled 5.2 15 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0