Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP08369
DateWed Jan 25 15:20:13 GMT 2012
Unique Job ID6947354f1d6119b9

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1hnga1
Top template information
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
Confidence and coverage
Confidence: 46.1% Coverage: 11%
50 residues ( 11% of your sequence) have been modelled with 46.1% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MLKSPLFWKMTSLFGAVLLLLIPIMLIRQVIVERADYRSDVEDAIRQSTSGPQKLVGPLI
Secondary structure 










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Disorder  ??????







































???
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   .........70.........80.........90.........100.........110.........120
Sequence  AIPVTELYTVQEEDKTVERKRSFIHFWLPESLMVDGNQNVEERKIGIYTGQVWHSDLTLK
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??

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   .........130.........140.........150.........160.........170.........180
Sequence  ADFDVSRLSELNAPNITLGKPFIVISVGDARGIGVVKAPEVNGTALTIEPGTGLEQGGQG
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???
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?????????????
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   .........190.........200.........210.........220.........230.........240
Sequence  VHIPLPEGDWRKQNLKLNMALNLSGTGDLSVVPGGRNSEMTLTSNWPHPSFLGDFLPAKR
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?


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??

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   .........250.........260.........270.........280.........290.........300
Sequence  EVSESGFQAHWQSSWFANNLGERFASGNDTGWENFPAFSVAVTTPADQYQLTDRATKYAI
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   .........310.........320.........330.........340.........350.........360
Sequence  LLIALTFMAFFVFETLTAQRLHPMQYLLVGLSLVMFYLLLLALSEHTGFTVAWIIASLIG
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   .........370.........380.........390.........400.........410.........420
Sequence  AIMNGIYLQAVLKGWCNSMLFTLALLLLDGVMWGLLNSADSALLLGTSVLVVALAGMMFV
Secondary structure 



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   .........430.........440.........450
Sequence  TRNIDWYAFSLPKMKASKEVTTDDELRIWK
Secondary structure 



























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Disorder 







??????????????????
???
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1hng chain A domain 1

3D model

Region: 66 - 116
Aligned: 50
Modelled: 50
Confidence: 46.1%
Identity: 12%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: V set domains (antibody variable domain-like)

Phyre2

PDB 2kr6 chain A

3D model

Region: 330 - 372
Aligned: 42
Modelled: 43
Confidence: 45.3%
Identity: 31%
PDB header:hydrolase
Chain: A: PDB Molecule:presenilin-1;
PDBTitle: solution structure of presenilin-1 ctf subunit

Phyre2

PDB 1v54 chain C

3D model

Region: 287 - 420
Aligned: 114
Modelled: 117
Confidence: 36.6%
Identity: 27%
Fold: Cytochrome c oxidase subunit III-like
Superfamily: Cytochrome c oxidase subunit III-like
Family: Cytochrome c oxidase subunit III-like

Phyre2

PDB 1q8h chain A

3D model

Region: 343 - 353
Aligned: 11
Modelled: 11
Confidence: 32.5%
Identity: 45%
PDB header:metal binding protein
Chain: A: PDB Molecule:osteocalcin;
PDBTitle: crystal structure of porcine osteocalcin

Phyre2

PDB 1q8h chain A

3D model

Region: 343 - 353
Aligned: 11
Modelled: 11
Confidence: 32.5%
Identity: 45%
Fold: GLA-domain
Superfamily: GLA-domain
Family: GLA-domain

Phyre2

PDB 1ikp chain A domain 1

3D model

Region: 148 - 223
Aligned: 76
Modelled: 76
Confidence: 30.5%
Identity: 18%
Fold: Concanavalin A-like lectins/glucanases
Superfamily: Concanavalin A-like lectins/glucanases
Family: Exotoxin A, N-terminal domain

Phyre2

PDB 3k3g chain A

3D model

Region: 327 - 389
Aligned: 56
Modelled: 63
Confidence: 29.9%
Identity: 21%
PDB header:transport protein
Chain: A: PDB Molecule:urea transporter;
PDBTitle: crystal structure of the urea transporter from desulfovibrio vulgaris2 bound to 1,3-dimethylurea

Phyre2

PDB 3kp9 chain A

3D model

Region: 300 - 398
Aligned: 98
Modelled: 99
Confidence: 26.5%
Identity: 10%
PDB header:blood coagulation,oxidoreductase
Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein;
PDBTitle: structure of a bacterial homolog of vitamin k epoxide reductase

Phyre2

PDB 1hnf chain A domain 1

3D model

Region: 106 - 116
Aligned: 11
Modelled: 11
Confidence: 26.3%
Identity: 18%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: V set domains (antibody variable domain-like)

Phyre2

PDB 1q3m chain A

3D model

Region: 343 - 353
Aligned: 11
Modelled: 11
Confidence: 25.3%
Identity: 45%
Fold: GLA-domain
Superfamily: GLA-domain
Family: GLA-domain

Phyre2

PDB 2ves chain A

3D model

Region: 152 - 247
Aligned: 95
Modelled: 96
Confidence: 21.5%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine
PDBTitle: crystal structure of lpxc from pseudomonas aeruginosa2 complexed with the potent bb-78485 inhibitor

Phyre2

PDB 1ori chain A

3D model

Region: 89 - 207
Aligned: 97
Modelled: 97
Confidence: 21.2%
Identity: 12%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Arginine methyltransferase

Phyre2

PDB 3nzk chain B

3D model

Region: 152 - 247
Aligned: 95
Modelled: 96
Confidence: 20.3%
Identity: 17%
PDB header:hydrolase
Chain: B: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine
PDBTitle: structure of lpxc from yersinia enterocolitica complexed with chir0902 inhibitor

Phyre2

PDB 1qle chain C

3D model

Region: 291 - 420
Aligned: 107
Modelled: 109
Confidence: 20.0%
Identity: 23%
Fold: Cytochrome c oxidase subunit III-like
Superfamily: Cytochrome c oxidase subunit III-like
Family: Cytochrome c oxidase subunit III-like

Phyre2

PDB 2ybo chain A

3D model

Region: 205 - 233
Aligned: 29
Modelled: 29
Confidence: 19.9%
Identity: 21%
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: the x-ray structure of the sam-dependent uroporphyrinogen2 iii methyltransferase nire from pseudomonas aeruginosa in3 complex with sah

Phyre2

PDB 1e2w chain A domain 1

3D model

Region: 54 - 94
Aligned: 41
Modelled: 41
Confidence: 19.4%
Identity: 12%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Cytochrome f, large domain
Family: Cytochrome f, large domain

Phyre2

PDB 1g47 chain A domain 1

3D model

Region: 232 - 246
Aligned: 15
Modelled: 15
Confidence: 18.3%
Identity: 40%
Fold: Glucocorticoid receptor-like (DNA-binding domain)
Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
Family: LIM domain

Phyre2

PDB 1yvr chain A domain 1

3D model

Region: 314 - 328
Aligned: 15
Modelled: 15
Confidence: 17.0%
Identity: 33%
Fold: alpha-alpha superhelix
Superfamily: TROVE domain-like
Family: TROVE domain-like

Phyre2

PDB 1vf5 chain C domain 1

3D model

Region: 54 - 94
Aligned: 41
Modelled: 41
Confidence: 16.9%
Identity: 15%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Cytochrome f, large domain
Family: Cytochrome f, large domain

Phyre2

PDB 1k0h chain A

3D model

Region: 109 - 166
Aligned: 58
Modelled: 58
Confidence: 16.7%
Identity: 9%
Fold: Phage tail proteins
Superfamily: Phage tail proteins
Family: gpFII-like

Phyre2
1

d1hnga1
2

c2kr6A_
3

d1v54c_
4

c1q8hA_
5

d1q8ha_
6

d1ikpa1
7

c3k3gA_
8

c3kp9A_
9

d1hnfa1
10

d1q3ma_
11

c2vesA_
12

d1oria_
13

c3nzkB_
14

d1qlec_
15

c2yboA_
16

d1e2wa1
17

d1g47a1
18

d1yvra1
19

d1vf5c1
20

d1k0ha_
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1hnga1



46.1 12 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
2c2kr6A_



45.3 31 PDB header:hydrolase
Chain: A: PDB Molecule:presenilin-1;
PDBTitle: solution structure of presenilin-1 ctf subunit
3d1v54c_



36.6 27 Fold:Cytochrome c oxidase subunit III-like
Superfamily:Cytochrome c oxidase subunit III-like
Family:Cytochrome c oxidase subunit III-like
4c1q8hA_



32.5 45 PDB header:metal binding protein
Chain: A: PDB Molecule:osteocalcin;
PDBTitle: crystal structure of porcine osteocalcin
5d1q8ha_



32.5 45 Fold:GLA-domain
Superfamily:GLA-domain
Family:GLA-domain
6d1ikpa1



30.5 18 Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Exotoxin A, N-terminal domain
7c3k3gA_



29.9 21 PDB header:transport protein
Chain: A: PDB Molecule:urea transporter;
PDBTitle: crystal structure of the urea transporter from desulfovibrio vulgaris2 bound to 1,3-dimethylurea
8c3kp9A_



26.5 10 PDB header:blood coagulation,oxidoreductase
Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein;
PDBTitle: structure of a bacterial homolog of vitamin k epoxide reductase
9d1hnfa1



26.3 18 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
10d1q3ma_



25.3 45 Fold:GLA-domain
Superfamily:GLA-domain
Family:GLA-domain
11c2vesA_



21.5 17 PDB header:hydrolase
Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine
PDBTitle: crystal structure of lpxc from pseudomonas aeruginosa2 complexed with the potent bb-78485 inhibitor
12d1oria_



21.2 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Arginine methyltransferase
13c3nzkB_



20.3 17 PDB header:hydrolase
Chain: B: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine
PDBTitle: structure of lpxc from yersinia enterocolitica complexed with chir0902 inhibitor
14d1qlec_



20.0 23 Fold:Cytochrome c oxidase subunit III-like
Superfamily:Cytochrome c oxidase subunit III-like
Family:Cytochrome c oxidase subunit III-like
15c2yboA_



19.9 21 PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: the x-ray structure of the sam-dependent uroporphyrinogen2 iii methyltransferase nire from pseudomonas aeruginosa in3 complex with sah
16d1e2wa1



19.4 12 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Cytochrome f, large domain
Family:Cytochrome f, large domain
17d1g47a1



18.3 40 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
18d1yvra1



17.0 33 Fold:alpha-alpha superhelix
Superfamily:TROVE domain-like
Family:TROVE domain-like
19d1vf5c1



16.9 15 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Cytochrome f, large domain
Family:Cytochrome f, large domain
20d1k0ha_



16.7 9 Fold:Phage tail proteins
Superfamily:Phage tail proteins
Family:gpFII-like
21c3o44G_



not modelled 15.9 18 PDB header:toxin
Chain: G: PDB Molecule:hemolysin;
PDBTitle: crystal structure of the vibrio cholerae cytolysin (hlya) heptameric2 pore
22c1xezA_



not modelled 15.6 18 PDB header:toxin
Chain: A: PDB Molecule:hemolysin;
PDBTitle: crystal structure of the vibrio cholerae cytolysin (hlya)2 pro-toxin with octylglucoside bound
23c1e2vB_



not modelled 15.3 12 PDB header:electron transport proteins
Chain: B: PDB Molecule:cytochrome f;
PDBTitle: n153q mutant of cytochrome f from chlamydomonas reinhardtii
24c3c5oD_



not modelled 15.2 9 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:upf0311 protein rpa1785;
PDBTitle: crystal structure of the conserved protein of unknown function rpa17852 from rhodopseudomonas palustris
25c2v1lA_



not modelled 14.8 23 PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: structure of the conserved hypothetical protein vc1805 from2 pathogenicity island vpi-2 of vibrio cholerae o1 biovar3 eltor str. n16961 shares structural homology with the4 human p32 protein
26c2p8zS_



not modelled 14.7 63 PDB header:translation
Chain: S: PDB Molecule:elongation factor tu-b;
PDBTitle: fitted structure of adpr-eef2 in the 80s:adpr-2 eef2:gdpnp:sordarin cryo-em reconstruction
27c1q90A_



not modelled 14.4 12 PDB header:photosynthesis
Chain: A: PDB Molecule:apocytochrome f;
PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii
28c2rddB_



not modelled 13.7 6 PDB header:membrane protein/transport protein
Chain: B: PDB Molecule:upf0092 membrane protein yajc;
PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix.
29c1ikqA_



not modelled 13.6 18 PDB header:transferase
Chain: A: PDB Molecule:exotoxin a;
PDBTitle: pseudomonas aeruginosa exotoxin a, wild type
30d1ci3m1



not modelled 13.6 15 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Cytochrome f, large domain
Family:Cytochrome f, large domain
31c3g7gG_



not modelled 13.4 17 PDB header:structural genomics, unknown function
Chain: G: PDB Molecule:upf0311 protein ca_c3321;
PDBTitle: crystal structure of the protein with unknown function from2 clostridium acetobutylicum atcc 824
32d1tu2b1



not modelled 12.6 15 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Cytochrome f, large domain
Family:Cytochrome f, large domain
33c2w56B_



not modelled 12.6 20 PDB header:unknown function
Chain: B: PDB Molecule:vc0508;
PDBTitle: structure of the hypothetical protein vc0508 from vibrio cholerae2 vsp-ii pathogenicity island
34d1hcza1



not modelled 11.9 12 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Cytochrome f, large domain
Family:Cytochrome f, large domain
35c3dwuA_



not modelled 11.8 63 PDB header:biosynthetic protein
Chain: A: PDB Molecule:elongation factor tu-b;
PDBTitle: transition-state model conformation of the switch i region2 fitted into the cryo-em map of the eef2.80s.alf4.gdp3 complex
36c3demB_



not modelled 11.6 6 PDB header:hydrolase
Chain: B: PDB Molecule:complement factor masp-3;
PDBTitle: cub1-egf-cub2 domain of human masp-1/3
37c2e75C_



not modelled 11.6 15 PDB header:photosynthesis
Chain: C: PDB Molecule:apocytochrome f;
PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus
38d1iwga8



not modelled 11.5 13 Fold:Multidrug efflux transporter AcrB transmembrane domain
Superfamily:Multidrug efflux transporter AcrB transmembrane domain
Family:Multidrug efflux transporter AcrB transmembrane domain
39c2k9pA_



not modelled 11.5 25 PDB header:membrane protein
Chain: A: PDB Molecule:pheromone alpha factor receptor;
PDBTitle: structure of tm1_tm2 in lppg micelles
40d3c8ya2



not modelled 11.1 18 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
41d1v97a1



not modelled 10.5 46 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
42d1jb0l_



not modelled 10.5 27 Fold:Photosystem I reaction center subunit XI, PsaL
Superfamily:Photosystem I reaction center subunit XI, PsaL
Family:Photosystem I reaction center subunit XI, PsaL
43c1ctmA_



not modelled 10.5 14 PDB header:electron transport(cytochrome)
Chain: A: PDB Molecule:cytochrome f;
PDBTitle: crystal structure of chloroplast cytochrome f reveals a2 novel cytochrome fold and unexpected heme ligation
44d1mtyg_



not modelled 10.3 27 Fold:Open three-helical up-and-down bundle
Superfamily:Methane monooxygenase hydrolase, gamma subunit
Family:Methane monooxygenase hydrolase, gamma subunit
45d3cx5e2



not modelled 9.8 24 Fold:Single transmembrane helix
Superfamily:ISP transmembrane anchor
Family:ISP transmembrane anchor
46c2k6zA_



not modelled 9.8 25 PDB header:metal transport
Chain: A: PDB Molecule:putative uncharacterized protein ttha1943;
PDBTitle: solution structures of copper loaded form pcua (trans2 conformation of the peptide bond involving the nitrogen of3 p14)
47d1m56c_



not modelled 9.6 15 Fold:Cytochrome c oxidase subunit III-like
Superfamily:Cytochrome c oxidase subunit III-like
Family:Cytochrome c oxidase subunit III-like
48d1mhyg_



not modelled 9.5 33 Fold:Open three-helical up-and-down bundle
Superfamily:Methane monooxygenase hydrolase, gamma subunit
Family:Methane monooxygenase hydrolase, gamma subunit
49c2nvoA_



not modelled 9.4 33 PDB header:rna binding protein
Chain: A: PDB Molecule:ro sixty-related protein, rsr;
PDBTitle: crystal structure of deinococcus radiodurans ro (rsr) protein
50c2gutA_



not modelled 9.1 25 PDB header:transcription
Chain: A: PDB Molecule:arc/mediator, positive cofactor 2 glutamine/q-
PDBTitle: solution structure of the trans-activation domain of the2 human co-activator arc105
51c3lrcC_



not modelled 8.9 11 PDB header:transport protein
Chain: C: PDB Molecule:arginine/agmatine antiporter;
PDBTitle: structure of e. coli adic (p1)
52c1dnuB_



not modelled 8.8 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:myeloperoxidase;
PDBTitle: structural analyses of human myeloperoxidase-thiocyanate complex
53c2oarA_



not modelled 8.7 17 PDB header:membrane protein
Chain: A: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: mechanosensitive channel of large conductance (mscl)
54d1k92a2



not modelled 8.6 30 Fold:Argininosuccinate synthetase, C-terminal domain
Superfamily:Argininosuccinate synthetase, C-terminal domain
Family:Argininosuccinate synthetase, C-terminal domain
55c2iv1J_



not modelled 8.4 36 PDB header:lyase
Chain: J: PDB Molecule:cyanate hydratase;
PDBTitle: site directed mutagenesis of key residues involved in the2 catalytic mechanism of cyanase
56c1orhA_



not modelled 8.4 13 PDB header:transferase
Chain: A: PDB Molecule:protein arginine n-methyltransferase 1;
PDBTitle: structure of the predominant protein arginine methyltransferase prmt1
57c2jxmB_



not modelled 8.2 12 PDB header:electron transport
Chain: B: PDB Molecule:cytochrome f;
PDBTitle: ensemble of twenty structures of the prochlorothrix2 hollandica plastocyanin- cytochrome f complex
58d1x9la_



not modelled 8.1 25 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:DR1885-like metal-binding protein
Family:DR1885-like metal-binding protein
59c1tu2B_



not modelled 7.8 15 PDB header:electron transport
Chain: B: PDB Molecule:apocytochrome f;
PDBTitle: the complex of nostoc cytochrome f and plastocyanin determin with2 paramagnetic nmr. based on the structures of cytochrome f and3 plastocyanin, 10 structures
60d1vava_



not modelled 7.7 25 Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Alginate lyase
61d2i5nl1



not modelled 7.7 14 Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
62c3c25A_



not modelled 7.6 21 PDB header:hydrolase/dna
Chain: A: PDB Molecule:noti restriction endonuclease;
PDBTitle: crystal structure of noti restriction endonuclease bound to cognate2 dna
63c2l4wA_



not modelled 7.4 29 PDB header:protein transport
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of the xanthomonas virb7
64d1k8ba_



not modelled 7.4 18 Fold:Ribosome binding domain-like
Superfamily:Translation initiation factor 2 beta, aIF2beta, N-terminal domain
Family:Translation initiation factor 2 beta, aIF2beta, N-terminal domain
65d2f41a1



not modelled 7.3 15 Fold:Thioesterase/thiol ester dehydrase-isomerase
Superfamily:Thioesterase/thiol ester dehydrase-isomerase
Family:PaaI/YdiI-like
66d1t3qa1



not modelled 7.1 20 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
67c2kqtD_



not modelled 7.1 26 PDB header:transport protein
Chain: D: PDB Molecule:m2 protein;
PDBTitle: solid-state nmr structure of the m2 transmembrane peptide of the2 influenza a virus in dmpc lipid bilayers bound to deuterated3 amantadine
68c2kqtA_



not modelled 7.1 26 PDB header:transport protein
Chain: A: PDB Molecule:m2 protein;
PDBTitle: solid-state nmr structure of the m2 transmembrane peptide of the2 influenza a virus in dmpc lipid bilayers bound to deuterated3 amantadine
69c2kqtB_



not modelled 7.1 26 PDB header:transport protein
Chain: B: PDB Molecule:m2 protein;
PDBTitle: solid-state nmr structure of the m2 transmembrane peptide of the2 influenza a virus in dmpc lipid bilayers bound to deuterated3 amantadine
70c2kqtC_



not modelled 7.1 26 PDB header:transport protein
Chain: C: PDB Molecule:m2 protein;
PDBTitle: solid-state nmr structure of the m2 transmembrane peptide of the2 influenza a virus in dmpc lipid bilayers bound to deuterated3 amantadine
71d1mv8a1



not modelled 7.1 36 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
72d1nt0a2



not modelled 7.1 13 Fold:CUB-like
Superfamily:Spermadhesin, CUB domain
Family:Spermadhesin, CUB domain
73c2lhuA_



not modelled 7.0 50 PDB header:structural protein
Chain: A: PDB Molecule:mybpc3 protein;
PDBTitle: structural insight into the unique cardiac myosin binding protein-c2 motif: a partially folded domain
74c2yvxD_



not modelled 7.0 17 PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
75d2axth1



not modelled 6.9 28 Fold:Single transmembrane helix
Superfamily:Photosystem II 10 kDa phosphoprotein PsbH
Family:PsbH-like
76d2oiea1



not modelled 6.9 58 Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
77c3o0rB_



not modelled 6.8 6 PDB header:immune system/oxidoreductase
Chain: B: PDB Molecule:nitric oxide reductase subunit b;
PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment
78d1zxia1



not modelled 6.8 25 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
79c1nyjC_



not modelled 6.8 28 PDB header:viral protein
Chain: C: PDB Molecule:matrix protein m2;
PDBTitle: the closed state structure of m2 protein h+ channel by2 solid state nmr spectroscopy
80c1mp6A_



not modelled 6.8 28 PDB header:membrane protein
Chain: A: PDB Molecule:matrix protein m2;
PDBTitle: structure of the transmembrane region of the m2 protein h+2 channel by solid state nmr spectroscopy
81c1nyjB_



not modelled 6.8 28 PDB header:viral protein
Chain: B: PDB Molecule:matrix protein m2;
PDBTitle: the closed state structure of m2 protein h+ channel by2 solid state nmr spectroscopy
82c1nyjA_



not modelled 6.8 28 PDB header:viral protein
Chain: A: PDB Molecule:matrix protein m2;
PDBTitle: the closed state structure of m2 protein h+ channel by2 solid state nmr spectroscopy
83c1nyjD_



not modelled 6.8 28 PDB header:viral protein
Chain: D: PDB Molecule:matrix protein m2;
PDBTitle: the closed state structure of m2 protein h+ channel by2 solid state nmr spectroscopy
84c3pojA_



not modelled 6.7 7 PDB header:hydrolase
Chain: A: PDB Molecule:mannan-binding lectin serine protease 1;
PDBTitle: crystal structure of masp-1 cub2 domain bound to ethylamine
85d2c5ra1



not modelled 6.7 25 Fold:Phage replication organizer domain
Superfamily:Phage replication organizer domain
Family:Phage replication organizer domain
86d1jroa1



not modelled 6.6 50 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
87c1ds5F_



not modelled 6.6 45 PDB header:transferase
Chain: F: PDB Molecule:casein kinase, beta chain;
PDBTitle: dimeric crystal structure of the alpha subunit in complex2 with two beta peptides mimicking the architecture of the3 tetrameric protein kinase ck2 holoenzyme.
88c2q4pA_



not modelled 6.6 32 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein rs21-c6;
PDBTitle: ensemble refinement of the crystal structure of protein from mus2 musculus mm.29898
89d2a3qa1



not modelled 6.6 32 Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
90c2q9lA_



not modelled 6.4 42 PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of imazg from vibrio dat 722: ctag-imazg (p43212)
91c2jttD_



not modelled 6.3 13 PDB header:calcium binding protein/antitumor protei
Chain: D: PDB Molecule:calcyclin-binding protein;
PDBTitle: solution structure of calcium loaded s100a6 bound to c-2 terminal siah-1 interacting protein
92d2axti1



not modelled 6.3 23 Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein I, PsbI
Family:PsbI-like
93c3nfgG_



not modelled 6.3 34 PDB header:transcription
Chain: G: PDB Molecule:dna-directed rna polymerase i subunit rpa49;
PDBTitle: crystal structure of dimerization module of rna polymerase i2 subcomplex a49/a34.5
94c3s88J_



not modelled 6.3 20 PDB header:immune system/viral protein
Chain: J: PDB Molecule:envelope glycoprotein;
PDBTitle: crystal structure of sudan ebolavirus glycoprotein (strain gulu) bound2 to 16f6
95c3dh4A_



not modelled 6.3 8 PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus
96c2f3xA_



not modelled 6.2 15 PDB header:gene regulation
Chain: A: PDB Molecule:transcription factor fapr;
PDBTitle: crystal structure of fapr (in complex with effector)- a2 global regulator of fatty acid biosynthesis in b. subtilis
97c2qmaB_



not modelled 6.1 25 PDB header:transferase
Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4-
PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus
98c3rceA_



not modelled 6.1 14 PDB header:transferase/peptide
Chain: A: PDB Molecule:oligosaccharide transferase to n-glycosylate proteins;
PDBTitle: bacterial oligosaccharyltransferase pglb
99c1yvrA_



not modelled 6.1 33 PDB header:rna binding protein
Chain: A: PDB Molecule:60-kda ss-a/ro ribonucleoprotein;
PDBTitle: ro autoantigen

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0