Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	K	S	P	L	F	W	K	M	T	S	L	F	G	A	V	L	L	L	L	I	P	I	M	L	I	R	Q	V	I	V	E	R	A	D	Y	R	S	D	V	E	D	A	I	R	Q	S	T	S	G	P	Q	K	L	V	G	P	L	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																																									?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	I	P	V	T	E	L	Y	T	V	Q	E	E	D	K	T	V	E	R	K	R	S	F	I	H	F	W	L	P	E	S	L	M	V	D	G	N	Q	N	V	E	E	R	K	I	G	I	Y	T	G	Q	V	W	H	S	D	L	T	L	K
Secondary structure
SS confidence
Disorder							?					?	?			?	?																						?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	D	F	D	V	S	R	L	S	E	L	N	A	P	N	I	T	L	G	K	P	F	I	V	I	S	V	G	D	A	R	G	I	G	V	V	K	A	P	E	V	N	G	T	A	L	T	I	E	P	G	T	G	L	E	Q	G	G	Q	G
Secondary structure
SS confidence
Disorder							?	?	?		?	?	?	?	?														?	?	?	?	?	?	?	?													?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	H	I	P	L	P	E	G	D	W	R	K	Q	N	L	K	L	N	M	A	L	N	L	S	G	T	G	D	L	S	V	V	P	G	G	R	N	S	E	M	T	L	T	S	N	W	P	H	P	S	F	L	G	D	F	L	P	A	K	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?																			?				?	?												?							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		E	V	S	E	S	G	F	Q	A	H	W	Q	S	S	W	F	A	N	N	L	G	E	R	F	A	S	G	N	D	T	G	W	E	N	F	P	A	F	S	V	A	V	T	T	P	A	D	Q	Y	Q	L	T	D	R	A	T	K	Y	A	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?								?		?											?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	L	I	A	L	T	F	M	A	F	F	V	F	E	T	L	T	A	Q	R	L	H	P	M	Q	Y	L	L	V	G	L	S	L	V	M	F	Y	L	L	L	L	A	L	S	E	H	T	G	F	T	V	A	W	I	I	A	S	L	I	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		A	I	M	N	G	I	Y	L	Q	A	V	L	K	G	W	C	N	S	M	L	F	T	L	A	L	L	L	L	D	G	V	M	W	G	L	L	N	S	A	D	S	A	L	L	L	G	T	S	V	L	V	V	A	L	A	G	M	M	F	V
Secondary structure
SS confidence
Disorder																																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Sequence		T	R	N	I	D	W	Y	A	F	S	L	P	K	M	K	A	S	K	E	V	T	T	D	D	E	L	R	I	W	K
Secondary structure
SS confidence
Disorder										?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1hng chain A domain 1 Region: 66 - 116 Aligned: 50 Modelled: 50 Confidence: 46.1% Identity: 12% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: V set domains (antibody variable domain-like) Phyre2 PDB 2kr6 chain A Region: 330 - 372 Aligned: 42 Modelled: 43 Confidence: 45.3% Identity: 31% PDB header:hydrolase Chain: A: PDB Molecule:presenilin-1; PDBTitle: solution structure of presenilin-1 ctf subunit Phyre2 PDB 1v54 chain C Region: 287 - 420 Aligned: 114 Modelled: 117 Confidence: 36.6% Identity: 27% Fold: Cytochrome c oxidase subunit III-like Superfamily: Cytochrome c oxidase subunit III-like Family: Cytochrome c oxidase subunit III-like Phyre2 PDB 1q8h chain A Region: 343 - 353 Aligned: 11 Modelled: 11 Confidence: 32.5% Identity: 45% PDB header:metal binding protein Chain: A: PDB Molecule:osteocalcin; PDBTitle: crystal structure of porcine osteocalcin Phyre2 PDB 1q8h chain A Region: 343 - 353 Aligned: 11 Modelled: 11 Confidence: 32.5% Identity: 45% Fold: GLA-domain Superfamily: GLA-domain Family: GLA-domain Phyre2 PDB 1ikp chain A domain 1 Region: 148 - 223 Aligned: 76 Modelled: 76 Confidence: 30.5% Identity: 18% Fold: Concanavalin A-like lectins/glucanases Superfamily: Concanavalin A-like lectins/glucanases Family: Exotoxin A, N-terminal domain Phyre2 PDB 3k3g chain A Region: 327 - 389 Aligned: 56 Modelled: 63 Confidence: 29.9% Identity: 21% PDB header:transport protein Chain: A: PDB Molecule:urea transporter; PDBTitle: crystal structure of the urea transporter from desulfovibrio vulgaris2 bound to 1,3-dimethylurea Phyre2 PDB 3kp9 chain A Region: 300 - 398 Aligned: 98 Modelled: 99 Confidence: 26.5% Identity: 10% PDB header:blood coagulation,oxidoreductase Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein; PDBTitle: structure of a bacterial homolog of vitamin k epoxide reductase Phyre2 PDB 1hnf chain A domain 1 Region: 106 - 116 Aligned: 11 Modelled: 11 Confidence: 26.3% Identity: 18% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: V set domains (antibody variable domain-like) Phyre2 PDB 1q3m chain A Region: 343 - 353 Aligned: 11 Modelled: 11 Confidence: 25.3% Identity: 45% Fold: GLA-domain Superfamily: GLA-domain Family: GLA-domain Phyre2 PDB 2ves chain A Region: 152 - 247 Aligned: 95 Modelled: 96 Confidence: 21.5% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine PDBTitle: crystal structure of lpxc from pseudomonas aeruginosa2 complexed with the potent bb-78485 inhibitor Phyre2 PDB 1ori chain A Region: 89 - 207 Aligned: 97 Modelled: 97 Confidence: 21.2% Identity: 12% Fold: S-adenosyl-L-methionine-dependent methyltransferases Superfamily: S-adenosyl-L-methionine-dependent methyltransferases Family: Arginine methyltransferase Phyre2 PDB 3nzk chain B Region: 152 - 247 Aligned: 95 Modelled: 96 Confidence: 20.3% Identity: 17% PDB header:hydrolase Chain: B: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine PDBTitle: structure of lpxc from yersinia enterocolitica complexed with chir0902 inhibitor Phyre2 PDB 1qle chain C Region: 291 - 420 Aligned: 107 Modelled: 109 Confidence: 20.0% Identity: 23% Fold: Cytochrome c oxidase subunit III-like Superfamily: Cytochrome c oxidase subunit III-like Family: Cytochrome c oxidase subunit III-like Phyre2 PDB 2ybo chain A Region: 205 - 233 Aligned: 29 Modelled: 29 Confidence: 19.9% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: the x-ray structure of the sam-dependent uroporphyrinogen2 iii methyltransferase nire from pseudomonas aeruginosa in3 complex with sah Phyre2 PDB 1e2w chain A domain 1 Region: 54 - 94 Aligned: 41 Modelled: 41 Confidence: 19.4% Identity: 12% Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily: Cytochrome f, large domain Family: Cytochrome f, large domain Phyre2 PDB 1g47 chain A domain 1 Region: 232 - 246 Aligned: 15 Modelled: 15 Confidence: 18.3% Identity: 40% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: LIM domain Phyre2 PDB 1yvr chain A domain 1 Region: 314 - 328 Aligned: 15 Modelled: 15 Confidence: 17.0% Identity: 33% Fold: alpha-alpha superhelix Superfamily: TROVE domain-like Family: TROVE domain-like Phyre2 PDB 1vf5 chain C domain 1 Region: 54 - 94 Aligned: 41 Modelled: 41 Confidence: 16.9% Identity: 15% Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily: Cytochrome f, large domain Family: Cytochrome f, large domain Phyre2 PDB 1k0h chain A Region: 109 - 166 Aligned: 58 Modelled: 58 Confidence: 16.7% Identity: 9% Fold: Phage tail proteins Superfamily: Phage tail proteins Family: gpFII-like Phyre2 1 d1hnga1 2 c2kr6A_ 3 d1v54c_ 4 c1q8hA_ 5 d1q8ha_ 6 d1ikpa1 7 c3k3gA_ 8 c3kp9A_ 9 d1hnfa1 10 d1q3ma_ 11 c2vesA_ 12 d1oria_ 13 c3nzkB_ 14 d1qlec_ 15 c2yboA_ 16 d1e2wa1 17 d1g47a1 18 d1yvra1 19 d1vf5c1 20 d1k0ha_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1hnga1 46.1 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 2 c2kr6A_ 45.3 31 PDB header:hydrolase Chain: A: PDB Molecule:presenilin-1; PDBTitle: solution structure of presenilin-1 ctf subunit 3 d1v54c_ 36.6 27 Fold:Cytochrome c oxidase subunit III-like Superfamily:Cytochrome c oxidase subunit III-like Family:Cytochrome c oxidase subunit III-like 4 c1q8hA_ 32.5 45 PDB header:metal binding protein Chain: A: PDB Molecule:osteocalcin; PDBTitle: crystal structure of porcine osteocalcin 5 d1q8ha_ 32.5 45 Fold:GLA-domain Superfamily:GLA-domain Family:GLA-domain 6 d1ikpa1 30.5 18 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Exotoxin A, N-terminal domain 7 c3k3gA_ 29.9 21 PDB header:transport protein Chain: A: PDB Molecule:urea transporter; PDBTitle: crystal structure of the urea transporter from desulfovibrio vulgaris2 bound to 1,3-dimethylurea 8 c3kp9A_ 26.5 10 PDB header:blood coagulation,oxidoreductase Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein; PDBTitle: structure of a bacterial homolog of vitamin k epoxide reductase 9 d1hnfa1 26.3 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 10 d1q3ma_ 25.3 45 Fold:GLA-domain Superfamily:GLA-domain Family:GLA-domain 11 c2vesA_ 21.5 17 PDB header:hydrolase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine PDBTitle: crystal structure of lpxc from pseudomonas aeruginosa2 complexed with the potent bb-78485 inhibitor 12 d1oria_ 21.2 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Arginine methyltransferase 13 c3nzkB_ 20.3 17 PDB header:hydrolase Chain: B: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine PDBTitle: structure of lpxc from yersinia enterocolitica complexed with chir0902 inhibitor 14 d1qlec_ 20.0 23 Fold:Cytochrome c oxidase subunit III-like Superfamily:Cytochrome c oxidase subunit III-like Family:Cytochrome c oxidase subunit III-like 15 c2yboA_ 19.9 21 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: the x-ray structure of the sam-dependent uroporphyrinogen2 iii methyltransferase nire from pseudomonas aeruginosa in3 complex with sah 16 d1e2wa1 19.4 12 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 17 d1g47a1 18.3 40 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 18 d1yvra1 17.0 33 Fold:alpha-alpha superhelix Superfamily:TROVE domain-like Family:TROVE domain-like 19 d1vf5c1 16.9 15 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 20 d1k0ha_ 16.7 9 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:gpFII-like 21 c3o44G_ not modelled 15.9 18 PDB header:toxin Chain: G: PDB Molecule:hemolysin; PDBTitle: crystal structure of the vibrio cholerae cytolysin (hlya) heptameric2 pore 22 c1xezA_ not modelled 15.6 18 PDB header:toxin Chain: A: PDB Molecule:hemolysin; PDBTitle: crystal structure of the vibrio cholerae cytolysin (hlya)2 pro-toxin with octylglucoside bound 23 c1e2vB_ not modelled 15.3 12 PDB header:electron transport proteins Chain: B: PDB Molecule:cytochrome f; PDBTitle: n153q mutant of cytochrome f from chlamydomonas reinhardtii 24 c3c5oD_ not modelled 15.2 9 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:upf0311 protein rpa1785; PDBTitle: crystal structure of the conserved protein of unknown function rpa17852 from rhodopseudomonas palustris 25 c2v1lA_ not modelled 14.8 23 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: structure of the conserved hypothetical protein vc1805 from2 pathogenicity island vpi-2 of vibrio cholerae o1 biovar3 eltor str. n16961 shares structural homology with the4 human p32 protein 26 c2p8zS_ not modelled 14.7 63 PDB header:translation Chain: S: PDB Molecule:elongation factor tu-b; PDBTitle: fitted structure of adpr-eef2 in the 80s:adpr-2 eef2:gdpnp:sordarin cryo-em reconstruction 27 c1q90A_ not modelled 14.4 12 PDB header:photosynthesis Chain: A: PDB Molecule:apocytochrome f; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii 28 c2rddB_ not modelled 13.7 6 PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. 29 c1ikqA_ not modelled 13.6 18 PDB header:transferase Chain: A: PDB Molecule:exotoxin a; PDBTitle: pseudomonas aeruginosa exotoxin a, wild type 30 d1ci3m1 not modelled 13.6 15 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 31 c3g7gG_ not modelled 13.4 17 PDB header:structural genomics, unknown function Chain: G: PDB Molecule:upf0311 protein ca_c3321; PDBTitle: crystal structure of the protein with unknown function from2 clostridium acetobutylicum atcc 824 32 d1tu2b1 not modelled 12.6 15 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 33 c2w56B_ not modelled 12.6 20 PDB header:unknown function Chain: B: PDB Molecule:vc0508; PDBTitle: structure of the hypothetical protein vc0508 from vibrio cholerae2 vsp-ii pathogenicity island 34 d1hcza1 not modelled 11.9 12 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 35 c3dwuA_ not modelled 11.8 63 PDB header:biosynthetic protein Chain: A: PDB Molecule:elongation factor tu-b; PDBTitle: transition-state model conformation of the switch i region2 fitted into the cryo-em map of the eef2.80s.alf4.gdp3 complex 36 c3demB_ not modelled 11.6 6 PDB header:hydrolase Chain: B: PDB Molecule:complement factor masp-3; PDBTitle: cub1-egf-cub2 domain of human masp-1/3 37 c2e75C_ not modelled 11.6 15 PDB header:photosynthesis Chain: C: PDB Molecule:apocytochrome f; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus 38 d1iwga8 not modelled 11.5 13 Fold:Multidrug efflux transporter AcrB transmembrane domain Superfamily:Multidrug efflux transporter AcrB transmembrane domain Family:Multidrug efflux transporter AcrB transmembrane domain 39 c2k9pA_ not modelled 11.5 25 PDB header:membrane protein Chain: A: PDB Molecule:pheromone alpha factor receptor; PDBTitle: structure of tm1_tm2 in lppg micelles 40 d3c8ya2 not modelled 11.1 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 41 d1v97a1 not modelled 10.5 46 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 42 d1jb0l_ not modelled 10.5 27 Fold:Photosystem I reaction center subunit XI, PsaL Superfamily:Photosystem I reaction center subunit XI, PsaL Family:Photosystem I reaction center subunit XI, PsaL 43 c1ctmA_ not modelled 10.5 14 PDB header:electron transport(cytochrome) Chain: A: PDB Molecule:cytochrome f; PDBTitle: crystal structure of chloroplast cytochrome f reveals a2 novel cytochrome fold and unexpected heme ligation 44 d1mtyg_ not modelled 10.3 27 Fold:Open three-helical up-and-down bundle Superfamily:Methane monooxygenase hydrolase, gamma subunit Family:Methane monooxygenase hydrolase, gamma subunit 45 d3cx5e2 not modelled 9.8 24 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 46 c2k6zA_ not modelled 9.8 25 PDB header:metal transport Chain: A: PDB Molecule:putative uncharacterized protein ttha1943; PDBTitle: solution structures of copper loaded form pcua (trans2 conformation of the peptide bond involving the nitrogen of3 p14) 47 d1m56c_ not modelled 9.6 15 Fold:Cytochrome c oxidase subunit III-like Superfamily:Cytochrome c oxidase subunit III-like Family:Cytochrome c oxidase subunit III-like 48 d1mhyg_ not modelled 9.5 33 Fold:Open three-helical up-and-down bundle Superfamily:Methane monooxygenase hydrolase, gamma subunit Family:Methane monooxygenase hydrolase, gamma subunit 49 c2nvoA_ not modelled 9.4 33 PDB header:rna binding protein Chain: A: PDB Molecule:ro sixty-related protein, rsr; PDBTitle: crystal structure of deinococcus radiodurans ro (rsr) protein 50 c2gutA_ not modelled 9.1 25 PDB header:transcription Chain: A: PDB Molecule:arc/mediator, positive cofactor 2 glutamine/q- PDBTitle: solution structure of the trans-activation domain of the2 human co-activator arc105 51 c3lrcC_ not modelled 8.9 11 PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) 52 c1dnuB_ not modelled 8.8 23 PDB header:oxidoreductase Chain: B: PDB Molecule:myeloperoxidase; PDBTitle: structural analyses of human myeloperoxidase-thiocyanate complex 53 c2oarA_ not modelled 8.7 17 PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: mechanosensitive channel of large conductance (mscl) 54 d1k92a2 not modelled 8.6 30 Fold:Argininosuccinate synthetase, C-terminal domain Superfamily:Argininosuccinate synthetase, C-terminal domain Family:Argininosuccinate synthetase, C-terminal domain 55 c2iv1J_ not modelled 8.4 36 PDB header:lyase Chain: J: PDB Molecule:cyanate hydratase; PDBTitle: site directed mutagenesis of key residues involved in the2 catalytic mechanism of cyanase 56 c1orhA_ not modelled 8.4 13 PDB header:transferase Chain: A: PDB Molecule:protein arginine n-methyltransferase 1; PDBTitle: structure of the predominant protein arginine methyltransferase prmt1 57 c2jxmB_ not modelled 8.2 12 PDB header:electron transport Chain: B: PDB Molecule:cytochrome f; PDBTitle: ensemble of twenty structures of the prochlorothrix2 hollandica plastocyanin- cytochrome f complex 58 d1x9la_ not modelled 8.1 25 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:DR1885-like metal-binding protein Family:DR1885-like metal-binding protein 59 c1tu2B_ not modelled 7.8 15 PDB header:electron transport Chain: B: PDB Molecule:apocytochrome f; PDBTitle: the complex of nostoc cytochrome f and plastocyanin determin with2 paramagnetic nmr. based on the structures of cytochrome f and3 plastocyanin, 10 structures 60 d1vava_ not modelled 7.7 25 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Alginate lyase 61 d2i5nl1 not modelled 7.7 14 Fold:Bacterial photosystem II reaction centre, L and M subunits Superfamily:Bacterial photosystem II reaction centre, L and M subunits Family:Bacterial photosystem II reaction centre, L and M subunits 62 c3c25A_ not modelled 7.6 21 PDB header:hydrolase/dna Chain: A: PDB Molecule:noti restriction endonuclease; PDBTitle: crystal structure of noti restriction endonuclease bound to cognate2 dna 63 c2l4wA_ not modelled 7.4 29 PDB header:protein transport Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: nmr structure of the xanthomonas virb7 64 d1k8ba_ not modelled 7.4 18 Fold:Ribosome binding domain-like Superfamily:Translation initiation factor 2 beta, aIF2beta, N-terminal domain Family:Translation initiation factor 2 beta, aIF2beta, N-terminal domain 65 d2f41a1 not modelled 7.3 15 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:PaaI/YdiI-like 66 d1t3qa1 not modelled 7.1 20 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 67 c2kqtD_ not modelled 7.1 26 PDB header:transport protein Chain: D: PDB Molecule:m2 protein; PDBTitle: solid-state nmr structure of the m2 transmembrane peptide of the2 influenza a virus in dmpc lipid bilayers bound to deuterated3 amantadine 68 c2kqtA_ not modelled 7.1 26 PDB header:transport protein Chain: A: PDB Molecule:m2 protein; PDBTitle: solid-state nmr structure of the m2 transmembrane peptide of the2 influenza a virus in dmpc lipid bilayers bound to deuterated3 amantadine 69 c2kqtB_ not modelled 7.1 26 PDB header:transport protein Chain: B: PDB Molecule:m2 protein; PDBTitle: solid-state nmr structure of the m2 transmembrane peptide of the2 influenza a virus in dmpc lipid bilayers bound to deuterated3 amantadine 70 c2kqtC_ not modelled 7.1 26 PDB header:transport protein Chain: C: PDB Molecule:m2 protein; PDBTitle: solid-state nmr structure of the m2 transmembrane peptide of the2 influenza a virus in dmpc lipid bilayers bound to deuterated3 amantadine 71 d1mv8a1 not modelled 7.1 36 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:UDP-glucose/GDP-mannose dehydrogenase dimerisation domain 72 d1nt0a2 not modelled 7.1 13 Fold:CUB-like Superfamily:Spermadhesin, CUB domain Family:Spermadhesin, CUB domain 73 c2lhuA_ not modelled 7.0 50 PDB header:structural protein Chain: A: PDB Molecule:mybpc3 protein; PDBTitle: structural insight into the unique cardiac myosin binding protein-c2 motif: a partially folded domain 74 c2yvxD_ not modelled 7.0 17 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 75 d2axth1 not modelled 6.9 28 Fold:Single transmembrane helix Superfamily:Photosystem II 10 kDa phosphoprotein PsbH Family:PsbH-like 76 d2oiea1 not modelled 6.9 58 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 77 c3o0rB_ not modelled 6.8 6 PDB header:immune system/oxidoreductase Chain: B: PDB Molecule:nitric oxide reductase subunit b; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment 78 d1zxia1 not modelled 6.8 25 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 79 c1nyjC_ not modelled 6.8 28 PDB header:viral protein Chain: C: PDB Molecule:matrix protein m2; PDBTitle: the closed state structure of m2 protein h+ channel by2 solid state nmr spectroscopy 80 c1mp6A_ not modelled 6.8 28 PDB header:membrane protein Chain: A: PDB Molecule:matrix protein m2; PDBTitle: structure of the transmembrane region of the m2 protein h+2 channel by solid state nmr spectroscopy 81 c1nyjB_ not modelled 6.8 28 PDB header:viral protein Chain: B: PDB Molecule:matrix protein m2; PDBTitle: the closed state structure of m2 protein h+ channel by2 solid state nmr spectroscopy 82 c1nyjA_ not modelled 6.8 28 PDB header:viral protein Chain: A: PDB Molecule:matrix protein m2; PDBTitle: the closed state structure of m2 protein h+ channel by2 solid state nmr spectroscopy 83 c1nyjD_ not modelled 6.8 28 PDB header:viral protein Chain: D: PDB Molecule:matrix protein m2; PDBTitle: the closed state structure of m2 protein h+ channel by2 solid state nmr spectroscopy 84 c3pojA_ not modelled 6.7 7 PDB header:hydrolase Chain: A: PDB Molecule:mannan-binding lectin serine protease 1; PDBTitle: crystal structure of masp-1 cub2 domain bound to ethylamine 85 d2c5ra1 not modelled 6.7 25 Fold:Phage replication organizer domain Superfamily:Phage replication organizer domain Family:Phage replication organizer domain 86 d1jroa1 not modelled 6.6 50 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 87 c1ds5F_ not modelled 6.6 45 PDB header:transferase Chain: F: PDB Molecule:casein kinase, beta chain; PDBTitle: dimeric crystal structure of the alpha subunit in complex2 with two beta peptides mimicking the architecture of the3 tetrameric protein kinase ck2 holoenzyme. 88 c2q4pA_ not modelled 6.6 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein rs21-c6; PDBTitle: ensemble refinement of the crystal structure of protein from mus2 musculus mm.29898 89 d2a3qa1 not modelled 6.6 32 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 90 c2q9lA_ not modelled 6.4 42 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of imazg from vibrio dat 722: ctag-imazg (p43212) 91 c2jttD_ not modelled 6.3 13 PDB header:calcium binding protein/antitumor protei Chain: D: PDB Molecule:calcyclin-binding protein; PDBTitle: solution structure of calcium loaded s100a6 bound to c-2 terminal siah-1 interacting protein 92 d2axti1 not modelled 6.3 23 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein I, PsbI Family:PsbI-like 93 c3nfgG_ not modelled 6.3 34 PDB header:transcription Chain: G: PDB Molecule:dna-directed rna polymerase i subunit rpa49; PDBTitle: crystal structure of dimerization module of rna polymerase i2 subcomplex a49/a34.5 94 c3s88J_ not modelled 6.3 20 PDB header:immune system/viral protein Chain: J: PDB Molecule:envelope glycoprotein; PDBTitle: crystal structure of sudan ebolavirus glycoprotein (strain gulu) bound2 to 16f6 95 c3dh4A_ not modelled 6.3 8 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus 96 c2f3xA_ not modelled 6.2 15 PDB header:gene regulation Chain: A: PDB Molecule:transcription factor fapr; PDBTitle: crystal structure of fapr (in complex with effector)- a2 global regulator of fatty acid biosynthesis in b. subtilis 97 c2qmaB_ not modelled 6.1 25 PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus 98 c3rceA_ not modelled 6.1 14 PDB header:transferase/peptide Chain: A: PDB Molecule:oligosaccharide transferase to n-glycosylate proteins; PDBTitle: bacterial oligosaccharyltransferase pglb 99 c1yvrA_ not modelled 6.1 33 PDB header:rna binding protein Chain: A: PDB Molecule:60-kda ss-a/ro ribonucleoprotein; PDBTitle: ro autoantigen

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0