Email l.a.kelley@imperial.ac.uk Description P32128 Date Thu Jan 5 11:49:13 GMT 2012 Unique Job ID 633b228f22d4fabd

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1j20a2 38.9 21 Fold:Argininosuccinate synthetase, C-terminal domain Superfamily:Argininosuccinate synthetase, C-terminal domain Family:Argininosuccinate synthetase, C-terminal domain 2 c1nvpC_ 26.0 18 PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia beta chain; PDBTitle: human tfiia/tbp/dna complex 3 d1nvpc_ 26.0 18 Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain 4 c1nh2C_ 25.4 18 PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia large chain; PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex 5 d1nh2c_ 25.4 18 Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain 6 c3ipfA_ 24.0 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the q251q8_deshy protein from desulfitobacterium2 hafniense. northeast structural genomics consortium target dhr8c. 7 c3obaA_ 23.7 25 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis 8 c2pfuA_ 22.6 5 PDB header:transport protein Chain: A: PDB Molecule:biopolymer transport exbd protein; PDBTitle: nmr strcuture determination of the periplasmic domain of exbd from2 e.coli 9 d1k92a2 22.6 33 Fold:Argininosuccinate synthetase, C-terminal domain Superfamily:Argininosuccinate synthetase, C-terminal domain Family:Argininosuccinate synthetase, C-terminal domain 10 c1bhgB_ 21.5 19 PDB header:glycosidase Chain: B: PDB Molecule:beta-glucuronidase; PDBTitle: human beta-glucuronidase at 2.6 a resolution 11 c3mv14_ 21.0 25 PDB header:hydrolase Chain: 4: PDB Molecule:beta-galactosidase; PDBTitle: e.coli (lacz) beta-galactosidase (r599a) in complex with guanidinium 12 c1jz6C_ 20.7 25 PDB header:hydrolase Chain: C: PDB Molecule:beta-galactosidase; PDBTitle: e. coli (lacz) beta-galactosidase in complex with galacto-2 tetrazole 13 c3lpgA_ 20.4 6 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:beta-glucuronidase; PDBTitle: structure of e. coli beta-glucuronidase bound with a novel, potent2 inhibitor 3-(2-fluorophenyl)-1-(2-hydroxyethyl)-1-((6-methyl-2-oxo-1,3 2-dihydroquinolin-3-yl)methyl)urea 14 c1yq2C_ 19.4 19 PDB header:hydrolase Chain: C: PDB Molecule:beta-galactosidase; PDBTitle: beta-galactosidase from arthrobacter sp. c2-2 (isoenzyme c2-2 2-1) 15 d2g82a1 19.1 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 16 c3bgaB_ 19.0 19 PDB header:hydrolase Chain: B: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482 17 d1obfo1 19.0 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 18 d1vc2a1 18.8 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 19 d6paxa1 18.2 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 20 d1ytfc_ 18.1 19 Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain 21 d1hdgo1 not modelled 16.9 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 22 c1k97A_ not modelled 16.4 33 PDB header:ligase Chain: A: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of e. coli argininosuccinate synthetase in complex2 with aspartate and citrulline 23 d2b4ro1 not modelled 16.3 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 24 d1gado1 not modelled 14.8 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 25 d1k78a1 not modelled 13.3 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 26 d1d6za4 not modelled 12.7 22 Fold:N domain of copper amine oxidase-like Superfamily:Copper amine oxidase, domain N Family:Copper amine oxidase, domain N 27 c1rm1C_ not modelled 12.3 19 PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia large chain; PDBTitle: structure of a yeast tfiia/tbp/tata-box dna complex 28 c3mhaB_ not modelled 11.9 83 PDB header:lipid binding protein Chain: B: PDB Molecule:lipoprotein lprg; PDBTitle: crystal structure of lprg from mycobacterium tuberculosis bound to pim 29 d1u8fo1 not modelled 11.6 28 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 30 d1dk7a_ not modelled 11.2 14 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 31 d1zud21 not modelled 10.6 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 32 d2caya1 not modelled 10.3 21 Fold:PH domain-like barrel Superfamily:PH domain-like Family:VPS36 N-terminal domain-like 33 d1oela2 not modelled 10.2 14 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 34 c2w7vB_ not modelled 10.1 11 PDB header:transport protein Chain: B: PDB Molecule:general secretion pathway protein l; PDBTitle: periplasmic domain of epsl from vibrio parahaemolyticus 35 c3cmgA_ not modelled 10.0 22 PDB header:hydrolase Chain: A: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis 36 c1ifpA_ not modelled 9.9 32 PDB header:virus Chain: A: PDB Molecule:major coat protein assembly; PDBTitle: inovirus (filamentous bacteriophage) strain pf3 major coat2 protein assembly 37 d1k8ba_ not modelled 9.8 7 Fold:Ribosome binding domain-like Superfamily:Translation initiation factor 2 beta, aIF2beta, N-terminal domain Family:Translation initiation factor 2 beta, aIF2beta, N-terminal domain 38 d3cmco1 not modelled 9.3 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 39 d3gpdg1 not modelled 8.9 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 40 d1yqea1 not modelled 8.6 15 Fold:Phosphorylase/hydrolase-like Superfamily:AF0625-like Family:AF0625-like 41 d2odgc1 not modelled 8.4 50 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 42 d1dssg1 not modelled 8.0 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 43 d1j0xo1 not modelled 7.8 29 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 44 d1srva_ not modelled 7.6 50 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 45 c1tygG_ not modelled 7.5 17 PDB header:biosynthetic protein Chain: G: PDB Molecule:yjbs; PDBTitle: structure of the thiazole synthase/this complex 46 c1kh2D_ not modelled 7.4 21 PDB header:ligase Chain: D: PDB Molecule:argininosuccinate synthetase; PDBTitle: crystal structure of thermus thermophilus hb82 argininosuccinate synthetase in complex with atp 47 c2jv8A_ not modelled 7.4 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ne1242; PDBTitle: solution structure of protein ne1242 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net4 48 d1dm9a_ not modelled 7.2 46 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Heat shock protein 15 kD 49 c1dm9A_ not modelled 7.2 46 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd 50 c3bbnI_ not modelled 7.1 27 PDB header:ribosome Chain: I: PDB Molecule:ribosomal protein s9; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 51 d2vqei1 not modelled 7.1 55 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 52 c3m6cA_ not modelled 6.9 56 PDB header:chaperone Chain: A: PDB Molecule:60 kda chaperonin 1; PDBTitle: crystal structure of mycobacterium tuberculosis groel1 apical domain 53 c2gfqC_ not modelled 6.8 19 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:upf0204 protein ph0006; PDBTitle: structure of protein of unknown function ph0006 from pyrococcus2 horikoshii 54 c2kd2A_ not modelled 6.7 26 PDB header:apoptosis Chain: A: PDB Molecule:fas apoptotic inhibitory molecule 1; PDBTitle: nmr structure of faim-ctd 55 d1sjpa2 not modelled 6.6 50 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 56 d1x87a_ not modelled 6.6 27 Fold:Urocanase Superfamily:Urocanase Family:Urocanase 57 c2cqjA_ not modelled 6.6 15 PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog 58 c3fn9B_ not modelled 6.5 28 PDB header:hydrolase Chain: B: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis 59 c2jtxA_ not modelled 6.5 20 PDB header:transcription Chain: A: PDB Molecule:transcription initiation factor iie subunit PDBTitle: nmr structure of the tfiie-alpha carboxyl terminus 60 d2gy9i1 not modelled 6.4 36 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 61 c3em0A_ not modelled 6.4 9 PDB header:lipid binding protein Chain: A: PDB Molecule:ileal bile acid-binding protein; PDBTitle: crystal structure of zebrafish ileal bile acid-bindin protein2 complexed with cholic acid (crystal form b). 62 d1sjpa3 not modelled 6.3 13 Fold:GroEL-intermediate domain like Superfamily:GroEL-intermediate domain like Family:GroEL-like chaperone, intermediate domain 63 c2dw3A_ not modelled 6.2 30 PDB header:photosynthesis Chain: A: PDB Molecule:intrinsic membrane protein pufx; PDBTitle: solution structure of the rhodobacter sphaeroides pufx2 membrane protein 64 d1tygb_ not modelled 6.1 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 65 d1ffva2 not modelled 6.1 33 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 66 d1kh0a_ not modelled 6.1 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:Immunoglobulin-binding domains Family:Immunoglobulin-binding domains 67 c2zkqi_ not modelled 6.1 27 PDB header:ribosomal protein/rna Chain: I: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 68 d1we3a2 not modelled 6.1 50 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 69 d1v6ga2 not modelled 6.0 50 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 70 d1gxqa_ not modelled 5.9 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 71 d1vioa2 not modelled 5.9 10 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 72 c2rnqA_ not modelled 5.9 31 PDB header:transcription Chain: A: PDB Molecule:transcription initiation factor iie subunit PDBTitle: solution structure of the c-terminal acidic domain of tfiie2 alpha 73 d2cu3a1 not modelled 5.9 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 74 c2jwlB_ not modelled 5.9 19 PDB header:membrane protein Chain: B: PDB Molecule:protein tolr; PDBTitle: solution structure of periplasmic domain of tolr from h.2 influenzae with saxs data 75 c3ci0K_ not modelled 5.8 11 PDB header:protein transport Chain: K: PDB Molecule:pseudopilin gspk; PDBTitle: the crystal structure of the gspk-gspi-gspj complex from2 enterotoxigenic escherichia coli type 2 secretion system 76 c2k6xA_ not modelled 5.8 27 PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: autoregulation of a group 1 bacterial sigma factor involves2 the formation of a region 1.1- induced compacted structure 77 c2yglA_ not modelled 5.7 24 PDB header:hydrolase Chain: A: PDB Molecule:blood group a-and b-cleaving endo-beta-galactosidase; PDBTitle: the x-ray crystal structure of tandem cbm51 modules of sp3gh98, the2 family 98 glycoside hydrolase from streptococcus pneumoniae3 sp3-bs71 78 d1kida_ not modelled 5.6 38 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 79 d1z45a1 not modelled 5.6 19 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Aldose 1-epimerase (mutarotase) 80 d2pkqo1 not modelled 5.6 7 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 81 c3bmaC_ not modelled 5.5 11 PDB header:ligase Chain: C: PDB Molecule:d-alanyl-lipoteichoic acid synthetase; PDBTitle: crystal structure of d-alanyl-lipoteichoic acid synthetase from2 streptococcus pneumoniae r6 82 d2gfqa1 not modelled 5.5 19 Fold:Phosphorylase/hydrolase-like Superfamily:AF0625-like Family:AF0625-like 83 c3sy6A_ not modelled 5.4 11 PDB header:cell adhesion Chain: A: PDB Molecule:fimbrial protein bf1861; PDBTitle: crystal structure of a fimbrial protein bf1861 [bacteroides fragilis2 nctc 9343] (bf1861) from bacteroides fragilis nctc 9343 at 1.90 a3 resolution 84 d1dgja2 not modelled 5.3 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 85 d1rm6c2 not modelled 5.3 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 86 c2jzyA_ not modelled 5.1 6 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein pcor; PDBTitle: solution structure of c-terminal effector domain of2 putative two-component-system response regulator involved3 in copper resistance from klebsiella pneumoniae 87 d2cfua1 not modelled 5.1 14 Fold:SCP-like Superfamily:SCP-like Family:Alkylsulfatase C-terminal domain-like 88 c2wj7D_ not modelled 5.0 32 PDB header:chaperone Chain: D: PDB Molecule:alpha-crystallin b chain; PDBTitle: human alphab crystallin