Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	Q	R	R	L	A	S	T	E	W	V	D	I	V	N	E	E	N	E	V	I	A	Q	A	S	R	E	Q	M	R	A	Q	C	L	R	H	R	A	T	Y	I	V	V	H	D	G	M	G	K	I	L	V	Q	R	R	T	E	T	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	F	L	P	G	M	L	D	A	T	A	G	G	V	V	Q	A	D	E	Q	L	L	E	S	A	R	R	E	A	E	E	E	L	G	I	A	G	V	P	F	A	E	H	G	Q	F	Y	F	E	D	K	N	C	R	V	W	G	A	L	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	C	V	S	H	G	P	F	A	L	Q	E	D	E	V	S	E	V	C	W	L	T	P	E	E	I	T	A	R	C	D	E	F	T	P	D	S	L	K	A	L	A	L	W	M	K	R	N	A	K	N	E	A	V	E	T	E	T	A	E
Secondary structure
SS confidence
Disorder																																																			?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
Sequence
Secondary structure
SS confidence
Disorder
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2fkb chain A domain 1 Region: 8 - 168 Aligned: 161 Modelled: 161 Confidence: 100.0% Identity: 98% Fold: Nudix Superfamily: Nudix Family: IPP isomerase-like Phyre2 PDB 2i6k chain A Region: 8 - 178 Aligned: 171 Modelled: 171 Confidence: 100.0% Identity: 22% PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1; PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog Phyre2 PDB 2pny chain A Region: 8 - 180 Aligned: 173 Modelled: 173 Confidence: 100.0% Identity: 23% PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2 Phyre2 PDB 1ppv chain A Region: 10 - 169 Aligned: 159 Modelled: 160 Confidence: 100.0% Identity: 19% Fold: Nudix Superfamily: Nudix Family: IPP isomerase-like Phyre2 PDB 2o5f chain A domain 1 Region: 10 - 166 Aligned: 150 Modelled: 157 Confidence: 100.0% Identity: 27% Fold: Nudix Superfamily: Nudix Family: IPP isomerase-like Phyre2 PDB 1hzt chain A Region: 36 - 169 Aligned: 133 Modelled: 134 Confidence: 99.9% Identity: 20% Fold: Nudix Superfamily: Nudix Family: IPP isomerase-like Phyre2 PDB 3dup chain B Region: 10 - 170 Aligned: 161 Modelled: 161 Confidence: 99.9% Identity: 17% PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170 Phyre2 PDB 3grn chain B Region: 36 - 171 Aligned: 133 Modelled: 136 Confidence: 99.9% Identity: 29% PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 Phyre2 PDB 3dku chain B Region: 36 - 179 Aligned: 139 Modelled: 144 Confidence: 99.9% Identity: 22% PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 Phyre2 PDB 1sjy chain A Region: 31 - 169 Aligned: 136 Modelled: 139 Confidence: 99.9% Identity: 17% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 2b0v chain A domain 1 Region: 36 - 177 Aligned: 138 Modelled: 142 Confidence: 99.9% Identity: 17% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3n77 chain B Region: 35 - 163 Aligned: 126 Modelled: 129 Confidence: 99.9% Identity: 25% PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 Phyre2 PDB 2gb5 chain B Region: 33 - 172 Aligned: 132 Modelled: 140 Confidence: 99.9% Identity: 15% PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution Phyre2 PDB 3cng chain C Region: 11 - 171 Aligned: 154 Modelled: 161 Confidence: 99.9% Identity: 14% PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea Phyre2 PDB 3hhj chain A Region: 38 - 167 Aligned: 126 Modelled: 130 Confidence: 99.9% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae Phyre2 PDB 1pun chain A Region: 38 - 166 Aligned: 124 Modelled: 124 Confidence: 99.9% Identity: 18% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 1vcd chain A domain 1 Region: 36 - 167 Aligned: 123 Modelled: 132 Confidence: 99.9% Identity: 20% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3ef5 chain A Region: 40 - 167 Aligned: 123 Modelled: 128 Confidence: 99.8% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp Phyre2 PDB 3h95 chain A Region: 37 - 167 Aligned: 123 Modelled: 129 Confidence: 99.8% Identity: 16% PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 Phyre2 PDB 1vk6 chain A domain 2 Region: 36 - 172 Aligned: 131 Modelled: 137 Confidence: 99.8% Identity: 16% Fold: Nudix Superfamily: Nudix Family: NADH pyrophosphatase Phyre2 1 d2fkba1 2 c2i6kA_ 3 c2pnyA_ 4 d1ppva_ 5 d2o5fa1 6 d1hzta_ 7 c3dupB_ 8 c3grnB_ 9 c3dkuB_ 10 d1sjya_ 11 d2b0va1 12 c3n77B_ 13 c2gb5B_ 14 c3cngC_ 15 c3hhjA_ 16 d1puna_ 17 d1vcda1 18 c3ef5A_ 19 c3h95A_ 20 d1vk6a2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2fkba1 100.0 98 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 2 c2i6kA_ 100.0 22 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1; PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog 3 c2pnyA_ 100.0 23 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2 4 d1ppva_ 100.0 19 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 5 d2o5fa1 100.0 27 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 6 d1hzta_ 99.9 20 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 7 c3dupB_ 99.9 17 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170 8 c3grnB_ 99.9 29 PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 9 c3dkuB_ 99.9 22 PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 10 d1sjya_ 99.9 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 11 d2b0va1 99.9 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 12 c3n77B_ 99.9 25 PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 13 c2gb5B_ 99.9 15 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 14 c3cngC_ 99.9 14 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 15 c3hhjA_ 99.9 17 PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae 16 d1puna_ 99.9 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 17 d1vcda1 99.9 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 18 c3ef5A_ 99.8 23 PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp 19 c3h95A_ 99.8 16 PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 20 d1vk6a2 99.8 16 Fold:Nudix Superfamily:Nudix Family:NADH pyrophosphatase 21 c2kdvA_ not modelled 99.8 13 PDB header:hydrolase Chain: A: PDB Molecule:rna pyrophosphohydrolase; PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli 22 c3o8sA_ not modelled 99.8 17 PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution 23 c2yvoA_ not modelled 99.8 22 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8 24 d1g0sa_ not modelled 99.8 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 25 c3gz8C_ not modelled 99.8 18 PDB header:dna binding protein Chain: C: PDB Molecule:mutt/nudix family protein; PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose 26 d2fb1a2 not modelled 99.8 18 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 27 d1ryaa_ not modelled 99.8 22 Fold:Nudix Superfamily:Nudix Family:GDP-mannose mannosyl hydrolase NudD 28 c3gwyA_ not modelled 99.8 18 PDB header:hydrolase Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase; PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis 29 c3exqA_ not modelled 99.8 15 PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis 30 c2pq1B_ not modelled 99.8 16 PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 31 d1jkna_ not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 32 c2o1cB_ not modelled 99.8 16 PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase 33 c2w4eA_ not modelled 99.8 20 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans 34 c3q4iA_ not modelled 99.8 18 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ 35 d2azwa1 not modelled 99.8 22 Fold:Nudix Superfamily:Nudix Family:MutT-like 36 c3gg6A_ not modelled 99.8 13 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 18; PDBTitle: crystal structure of the nudix domain of human nudt18 37 d1nqza_ not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 38 d2fvva1 not modelled 99.8 15 Fold:Nudix Superfamily:Nudix Family:MutT-like 39 c2fvvA_ not modelled 99.8 15 PDB header:hydrolase Chain: A: PDB Molecule:diphosphoinositol polyphosphate phosphohydrolase PDBTitle: human diphosphoinositol polyphosphate phosphohydrolase 1 40 d1irya_ not modelled 99.8 22 Fold:Nudix Superfamily:Nudix Family:MutT-like 41 c2yyhC_ not modelled 99.8 21 PDB header:hydrolase Chain: C: PDB Molecule:8-oxo-dgtpase domain; PDBTitle: crystal structure of nudix family protein from aquifex aeolicus 42 c3r03B_ not modelled 99.8 17 PDB header:hydrolase Chain: B: PDB Molecule:nudix hydrolase; PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum 43 d2b06a1 not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 44 c2qjoB_ not modelled 99.8 20 PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. 45 c2jvbA_ not modelled 99.8 13 PDB header:hydrolase Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2; PDBTitle: solution structure of catalytic domain of ydcp2 46 c3f6aA_ not modelled 99.8 15 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens 47 d1xsba_ not modelled 99.8 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 48 d1ktga_ not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 49 c3fk9B_ not modelled 99.8 21 PDB header:hydrolase Chain: B: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mmutator mutt protein from bacillus2 halodurans 50 d1vhza_ not modelled 99.8 11 Fold:Nudix Superfamily:Nudix Family:MutT-like 51 c2fb1A_ not modelled 99.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron 52 c3i9xA_ not modelled 99.8 21 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from listeria innocua 53 d2a6ta2 not modelled 99.8 15 Fold:Nudix Superfamily:Nudix Family:mRNA decapping enzyme-like 54 d1mqea_ not modelled 99.8 16 Fold:Nudix Superfamily:Nudix Family:MutT-like 55 d1v8ya_ not modelled 99.8 22 Fold:Nudix Superfamily:Nudix Family:MutT-like 56 c3id9B_ not modelled 99.8 18 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from2 bacillus thuringiensis 57 c3fcmA_ not modelled 99.8 16 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a nudix hydrolase from clostridium2 perfringens 58 c2qkmF_ not modelled 99.8 14 PDB header:hydrolase Chain: F: PDB Molecule:spac19a8.12 protein; PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex 59 c2r5wA_ not modelled 99.7 14 PDB header:hydrolase, transferase Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase; PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis 60 c3fjyB_ not modelled 99.7 16 PDB header:hydrolase Chain: B: PDB Molecule:probable mutt1 protein; PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis 61 c3gz6A_ not modelled 99.7 18 PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna 62 d1k2ea_ not modelled 99.7 24 Fold:Nudix Superfamily:Nudix Family:MutT-like 63 c3edsA_ not modelled 99.7 19 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mut/nudix family protein from bacillus2 thuringiensis 64 c3e57A_ not modelled 99.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein tm1382; PDBTitle: crystal structure of tm1382, a putative nudix hydrolase 65 c3sonB_ not modelled 99.7 18 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical nudix hydrolase; PDBTitle: crystal structure of a hypothetical nudix hydrolase (lmof2365_2679)2 from listeria monocytogenes (atcc 19115) at 1.70 a resolution 66 c2pqvA_ not modelled 99.7 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from streptococcus2 pneumoniae 67 c3bm4B_ not modelled 99.7 18 PDB header:hydrolase Chain: B: PDB Molecule:adp-sugar pyrophosphatase; PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt52 in complex with magnesium and ampcpr 68 c3q91D_ not modelled 99.7 21 PDB header:hydrolase Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase; PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14) 69 d2fmla2 not modelled 99.7 17 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 70 d1viua_ not modelled 99.7 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 71 c1rrqA_ not modelled 99.7 11 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 72 d1x51a1 not modelled 99.7 15 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 73 c3rh7A_ not modelled 99.7 11 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical oxidoreductase; PDBTitle: crystal structure of a hypothetical oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution 74 c3f13A_ not modelled 99.6 13 PDB header:hydrolase Chain: A: PDB Molecule:putative nudix hydrolase family member; PDBTitle: crystal structure of putative nudix hydrolase family member2 from chromobacterium violaceum 75 c2fmlB_ not modelled 99.6 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from enterococcus2 faecalis 76 d1rrqa2 not modelled 99.6 12 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 77 d1u20a1 not modelled 99.5 21 Fold:Nudix Superfamily:Nudix Family:MutT-like 78 d1q33a_ not modelled 99.5 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 79 c3qsjA_ not modelled 99.5 29 PDB header:hydrolase Chain: A: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius 80 c2j8qB_ not modelled 99.4 15 PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. 81 c3couA_ not modelled 98.8 27 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16; PDBTitle: crystal structure of human nudix motif 16 (nudt16) 82 c3kvhA_ not modelled 98.4 21 PDB header:rna binding protein Chain: A: PDB Molecule:protein syndesmos; PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein) 83 c3p5tE_ not modelled 96.4 21 PDB header:rna binding protein Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; PDBTitle: cfim25-cfim68 complex 84 d2q4ma1 not modelled 30.7 17 Fold:Tubby C-terminal domain-like Superfamily:Tubby C-terminal domain-like Family:At5g01750-like 85 c1zxuA_ not modelled 30.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:at5g01750 protein; PDBTitle: x-ray structure of protein from arabidopsis thaliana2 at5g01750 86 c3brcA_ not modelled 18.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein of unknown function; PDBTitle: crystal structure of a conserved protein of unknown function from2 methanobacterium thermoautotrophicum 87 c2d3aJ_ not modelled 18.3 11 PDB header:ligase Chain: J: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of the maize glutamine synthetase2 complexed with adp and methionine sulfoximine phosphate 88 c3enoB_ not modelled 16.3 13 PDB header:hydrolase/unknown function Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase; PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1 89 c2vldA_ not modelled 15.7 21 PDB header:hydrolase Chain: A: PDB Molecule:upf0286 protein pyrab01260; PDBTitle: crystal structure of a repair endonuclease from pyrococcus2 abyssi 90 c1glbG_ not modelled 15.3 21 PDB header:phosphotransferase Chain: G: PDB Molecule:glycerol kinase; PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase 91 c3gg4B_ not modelled 13.2 21 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis 92 c1zfjA_ not modelled 13.1 18 PDB header:oxidoreductase Chain: A: PDB Molecule:inosine monophosphate dehydrogenase; PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes 93 d2p3ra1 not modelled 10.8 24 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 94 c3flcX_ not modelled 9.2 23 PDB header:transferase Chain: X: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol 95 c3ezwD_ not modelled 8.9 23 PDB header:transferase Chain: D: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices 96 c2dpnB_ not modelled 8.3 20 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 97 c3g25B_ not modelled 8.2 19 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol. 98 d1r59o1 not modelled 7.8 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 99 c3kxrA_ not modelled 7.5 29 PDB header:transport protein Chain: A: PDB Molecule:magnesium transporter, putative; PDBTitle: structure of the cystathionine beta-synthase pair domain of the2 putative mg2+ transporter so5017 from shewanella oneidensis mr-1.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0