Email l.a.kelley@imperial.ac.uk Description P39385 Date Thu Jan 5 12:00:18 GMT 2012 Unique Job ID 627cfa026cd6e181

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1xg7a_ 48.1 30 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:AgoG-like 2 d1ee8a1 44.6 21 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 3 d1k3xa1 42.5 13 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 4 d1tdza1 37.5 17 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 5 d1r2za1 37.5 19 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 6 c3edyA_ 36.5 22 PDB header:hydrolase Chain: A: PDB Molecule:tripeptidyl-peptidase 1; PDBTitle: crystal structure of the precursor form of human tripeptidyl-peptidase2 1 7 d1k82a1 35.3 10 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 8 d1xqoa_ 30.6 30 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:AgoG-like 9 c2kncA_ 29.9 28 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 10 c3ee6A_ 29.7 22 PDB header:hydrolase Chain: A: PDB Molecule:tripeptidyl-peptidase 1; PDBTitle: crystal structure analysis of tripeptidyl peptidase -i 11 d1ug3a1 29.0 15 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:MIF4G domain-like 12 c2lbgA_ 27.8 46 PDB header:membrane protein Chain: A: PDB Molecule:major prion protein; PDBTitle: structure of the chr of the prion protein in dpc micelles 13 d1t1ea2 25.9 12 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors 14 c2k1aA_ 25.9 28 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 15 c3h2zA_ 25.4 18 PDB header:oxidoreductase Chain: A: PDB Molecule:mannitol-1-phosphate 5-dehydrogenase; PDBTitle: the crystal structure of mannitol-1-phosphate dehydrogenase from2 shigella flexneri 16 d1t5ja_ 24.6 18 Fold:ADP-ribosylglycohydrolase Superfamily:ADP-ribosylglycohydrolase Family:ADP-ribosylglycohydrolase 17 c3g9dB_ 24.3 23 PDB header:hydrolase Chain: B: PDB Molecule:dinitrogenase reductase activacting PDBTitle: crystal structure glycohydrolase 18 d2aq0a1 23.6 8 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 19 c2qtyB_ 22.1 27 PDB header:hydrolase Chain: B: PDB Molecule:poly(adp-ribose) glycohydrolase arh3; PDBTitle: crystal structure of mouse adp-ribosylhydrolase 3 (marh3) 20 c2r6cG_ 21.6 15 PDB header:replication Chain: G: PDB Molecule:dnag primase, helicase binding domain; PDBTitle: crystal form bh2 21 c2k7rA_ not modelled 20.3 16 PDB header:replication Chain: A: PDB Molecule:primosomal protein dnai; PDBTitle: n-terminal domain of the bacillus subtilis helicase-loading2 protein dnai 22 c2wocA_ not modelled 19.4 27 PDB header:hydrolase Chain: A: PDB Molecule:adp-ribosyl-[dinitrogen reductase] glycohydrolase; PDBTitle: crystal structure of the dinitrogenase reductase-activating2 glycohydrolase (drag) from rhodospirillum rubrum 23 c2yzwA_ not modelled 19.2 27 PDB header:hydrolase Chain: A: PDB Molecule:adp-ribosylglycohydrolase; PDBTitle: adp-ribosylglycohydrolase-related protein complex 24 c1b9uA_ not modelled 17.8 28 PDB header:hydrolase Chain: A: PDB Molecule:protein (atp synthase); PDBTitle: membrane domain of the subunit b of the e.coli atp synthase 25 d2gp4a2 not modelled 16.9 13 Fold:IlvD/EDD N-terminal domain-like Superfamily:IlvD/EDD N-terminal domain-like Family:lvD/EDD N-terminal domain-like 26 d1rh5b_ not modelled 16.8 22 Fold:Single transmembrane helix Superfamily:Preprotein translocase SecE subunit Family:Preprotein translocase SecE subunit 27 c1ug3A_ not modelled 15.7 15 PDB header:translation Chain: A: PDB Molecule:eukaryotic protein synthesis initiation factor PDBTitle: c-terminal portion of human eif4gi 28 d2piha1 not modelled 15.0 5 Fold:YheA-like Superfamily:YheA/YmcA-like Family:YmcA-like 29 c2pihA_ not modelled 15.0 5 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ymca; PDBTitle: crystal structure of protein ymca from bacillus subtilis,2 northeast structural genomics target sr375 30 c2kncB_ not modelled 14.8 14 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 31 c2f5qA_ not modelled 14.6 19 PDB header:hydrolase/dna Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase; PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2 32 c3hd7A_ not modelled 13.9 6 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 33 d1v54d_ not modelled 13.9 13 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit IV Family:Mitochondrial cytochrome c oxidase subunit IV 34 c3qnqD_ not modelled 13.8 16 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 35 c2y69Q_ not modelled 13.7 13 PDB header:electron transport Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 36 d2a1ja1 not modelled 13.6 8 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 37 d2crga1 not modelled 13.2 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 38 c2kluA_ not modelled 12.8 26 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 39 c2w2eA_ not modelled 12.7 10 PDB header:membrane protein Chain: A: PDB Molecule:aquaporin; PDBTitle: 1.15 angstrom crystal structure of p.pastoris aquaporin,2 aqy1, in a closed conformation at ph 3.5 40 d1xi8a3 not modelled 12.5 20 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 41 c3hfwA_ not modelled 12.4 20 PDB header:hydrolase Chain: A: PDB Molecule:protein adp-ribosylarginine hydrolase; PDBTitle: crystal structure of human adp-ribosylhydrolase 1 (harh1) 42 c2opfA_ not modelled 12.2 15 PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate 43 c2gp4A_ not modelled 12.0 15 PDB header:lyase Chain: A: PDB Molecule:6-phosphogluconate dehydratase; PDBTitle: structure of [fes]cluster-free apo form of 6-phosphogluconate2 dehydratase from shewanella oneidensis 44 c3a46B_ not modelled 11.3 13 PDB header:hydrolase Chain: B: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of mvnei1/thf complex 45 c2l23A_ not modelled 11.0 13 PDB header:transcription Chain: A: PDB Molecule:mediator of rna polymerase ii transcription subunit 25; PDBTitle: nmr structure of the acid (activator interacting domain) of the human2 mediator med25 protein 46 c1wazA_ not modelled 11.0 18 PDB header:transport protein Chain: A: PDB Molecule:merf; PDBTitle: nmr structure determination of the bacterial mercury2 transporter, merf, in micelles 47 c3h3pT_ not modelled 10.8 43 PDB header:immune system Chain: T: PDB Molecule:4e10_s0_1tjlc_004_n; PDBTitle: crystal structure of hiv epitope-scaffold 4e10 fv complex 48 c1q90L_ not modelled 10.7 30 PDB header:photosynthesis Chain: L: PDB Molecule:cytochrome b6f complex subunit petl; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii 49 d1q90l_ not modelled 10.7 30 Fold:Single transmembrane helix Superfamily:PetL subunit of the cytochrome b6f complex Family:PetL subunit of the cytochrome b6f complex 50 c3kvhA_ not modelled 10.7 17 PDB header:rna binding protein Chain: A: PDB Molecule:protein syndesmos; PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein) 51 c1ee8A_ not modelled 10.7 21 PDB header:dna binding protein Chain: A: PDB Molecule:mutm (fpg) protein; PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8 52 c1nnjA_ not modelled 10.2 15 PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna 53 d1ymga1 not modelled 10.1 28 Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like 54 c1ymgA_ not modelled 10.1 28 PDB header:membrane protein Chain: A: PDB Molecule:lens fiber major intrinsic protein; PDBTitle: the channel architecture of aquaporin o at 2.2 angstrom resolution 55 c2hjmB_ not modelled 9.8 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein pf1176; PDBTitle: crystal structure of a singleton protein pf1176 from p. furiosus 56 d1k6za_ not modelled 9.7 26 Fold:Secretion chaperone-like Superfamily:Type III secretory system chaperone-like Family:Type III secretory system chaperone 57 c2vt2A_ not modelled 9.5 15 PDB header:transcription Chain: A: PDB Molecule:redox-sensing transcriptional repressor rex; PDBTitle: structure and functional properties of the bacillus2 subtilis transcriptional repressor rex 58 c3d9sB_ not modelled 9.4 33 PDB header:membrane protein Chain: B: PDB Molecule:aquaporin-5; PDBTitle: human aquaporin 5 (aqp5) - high resolution x-ray structure 59 d1rfza_ not modelled 9.4 11 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 60 c2zu6E_ not modelled 9.4 13 PDB header:hydrolase Chain: E: PDB Molecule:programmed cell death protein 4; PDBTitle: crystal structure of the eif4a-pdcd4 complex 61 c1k82D_ not modelled 9.3 10 PDB header:hydrolase/dna Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna 62 c2kqzA_ not modelled 9.3 4 PDB header:protein binding Chain: A: PDB Molecule:proteasomal ubiquitin receptor adrm1; PDBTitle: fragment of proteasome protein 63 d1xova2 not modelled 9.1 13 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:N-acetylmuramoyl-L-alanine amidase-like 64 d1jlja_ not modelled 9.1 18 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 65 c2qtqB_ not modelled 9.0 9 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a predicted dna-binding transcriptional regulator2 (saro_1072) from novosphingobium aromaticivorans dsm at 1.85 a3 resolution 66 c3c02A_ not modelled 8.9 17 PDB header:membrane protein Chain: A: PDB Molecule:aquaglyceroporin; PDBTitle: x-ray structure of the aquaglyceroporin from plasmodium falciparum 67 d1ug8a_ not modelled 8.8 22 Fold:IF3-like Superfamily:R3H domain Family:R3H domain 68 c2bcxB_ not modelled 8.8 86 PDB header:calcium binding protein Chain: B: PDB Molecule:ryanodine receptor 1; PDBTitle: crystal structure of calmodulin in complex with a ryanodine2 receptor peptide 69 d1jyaa_ not modelled 8.6 26 Fold:Secretion chaperone-like Superfamily:Type III secretory system chaperone-like Family:Type III secretory system chaperone 70 d2a4ha1 not modelled 8.6 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Selenoprotein W-related 71 c2zmeA_ not modelled 8.5 5 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 72 c3cuqA_ not modelled 8.3 5 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 73 d2cdxa_ not modelled 8.3 20 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 74 d1rc2a_ not modelled 8.3 33 Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like 75 d1y0na_ not modelled 8.2 11 Fold:YehU-like Superfamily:YehU-like Family:YehU-like 76 c1u0bB_ not modelled 8.2 13 PDB header:ligase/rna Chain: B: PDB Molecule:cysteinyl trna; PDBTitle: crystal structure of cysteinyl-trna synthetase binary2 complex with trnacys 77 d1dd4c_ not modelled 8.2 18 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 78 c1amlA_ not modelled 8.1 27 PDB header:serine protease inhibitor Chain: A: PDB Molecule:amyloid a4; PDBTitle: the alzheimer`s disease amyloid a4 peptide (residues 1-40) 79 d1j4na_ not modelled 8.1 22 Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like 80 d1cksa_ not modelled 8.1 67 Fold:Cell cycle regulatory proteins Superfamily:Cell cycle regulatory proteins Family:Cell cycle regulatory proteins 81 c2dzrA_ not modelled 8.1 29 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i repeat domain- PDBTitle: solution structure of rsgi ruh-067, a gtf2i domain in human2 cdna 82 c1dvpA_ not modelled 8.0 8 PDB header:transferase Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction 83 c2jesG_ not modelled 8.0 20 PDB header:viral protein Chain: G: PDB Molecule:portal protein; PDBTitle: portal protein from bacteriophage spp1 84 d1u5ta1 not modelled 8.0 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 85 d2hxja1 not modelled 7.9 22 Fold:FinO-like Superfamily:FinO-like Family:FinO-like 86 c2f2bA_ not modelled 7.9 33 PDB header:membrane protein Chain: A: PDB Molecule:aquaporin aqpm; PDBTitle: crystal structure of integral membrane protein aquaporin aqpm at 1.68a2 resolution 87 c3ahhA_ not modelled 7.8 12 PDB header:lyase Chain: A: PDB Molecule:xylulose 5-phosphate/fructose 6-phosphate phosphoketolase; PDBTitle: h142a mutant of phosphoketolase from bifidobacterium breve complexed2 with acetyl thiamine diphosphate 88 c1m5iA_ not modelled 7.8 13 PDB header:antitumor protein Chain: A: PDB Molecule:apc protein; PDBTitle: crystal structure of the coiled coil region 129-250 of the2 tumor suppressor gene product apc 89 d1hq1a_ not modelled 7.7 35 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 90 c2yqkA_ not modelled 7.7 26 PDB header:transcription/apoptosis Chain: A: PDB Molecule:arginine-glutamic acid dipeptide repeats protein; PDBTitle: solution structure of the sant domain in arginine-glutamic2 acid dipeptide (re) repeats 91 c1zaxZ_ not modelled 7.7 18 PDB header:structural protein Chain: Z: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b 92 c1zawV_ not modelled 7.7 18 PDB header:structural protein Chain: V: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form a 93 d1rkta2 not modelled 7.6 12 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 94 c1dfwA_ not modelled 7.6 54 PDB header:immune system Chain: A: PDB Molecule:lung surfactant protein b; PDBTitle: conformational mapping of the n-terminal segment of2 surfactant protein b in lipid using 13c-enhanced fourier3 transform infrared spectroscopy (ftir) 95 d1qb2a_ not modelled 7.6 18 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 96 d1sb0a_ not modelled 7.6 14 Fold:Kix domain of CBP (creb binding protein) Superfamily:Kix domain of CBP (creb binding protein) Family:Kix domain of CBP (creb binding protein) 97 c3llqB_ not modelled 7.5 25 PDB header:membrane protein Chain: B: PDB Molecule:aquaporin z 2; PDBTitle: aquaporin structure from plant pathogen agrobacterium tumerfaciens 98 c2krxA_ not modelled 7.5 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:asl3597 protein; PDBTitle: solution nmr structure of asl3597 from nostoc sp. pcc7120. northeast2 structural genomics consortium target id nsr244. 99 c1jauA_ not modelled 7.5 33 PDB header:viral protein Chain: A: PDB Molecule:transmembrane glycoprotein (gp41); PDBTitle: nmr solution structure of the trp-rich peptide of hiv gp412 bound to dpc micelles