Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	P	I	V	I	N	R	L	Q	R	K	L	G	Y	T	F	N	H	Q	E	L	L	Q	Q	A	L	T	H	R	S	A	S	S	K	H	N	E	R	L	E	F	L	G	D	S	I	L	S	Y	V	I	A	N	A	L	Y	H	R	F
Secondary structure
SS confidence
Disorder		?	?																																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	R	V	D	E	G	D	M	S	R	M	R	A	T	L	V	R	G	N	T	L	A	E	L	A	R	E	F	E	L	G	E	C	L	R	L	G	P	G	E	L	K	S	G	G	F	R	R	E	S	I	L	A	D	T	V	E	A	L	I
Secondary structure
SS confidence
Disorder						?																																		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	G	V	F	L	D	S	D	I	Q	T	V	E	K	L	I	L	N	W	Y	Q	T	R	L	D	E	I	S	P	G	D	K	Q	K	D	P	K	T	R	L	Q	E	Y	L	Q	G	R	H	L	P	L	P	T	Y	L	V	V	Q	V	R
Secondary structure
SS confidence
Disorder																											?	?		?	?	?	?	?	?													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Sequence		G	E	A	H	D	Q	E	F	T	I	H	C	Q	V	S	G	L	S	E	P	V	V	G	T	G	S	S	R	R	K	A	E	Q	A	A	A	E	Q	A	L	K	K	L	E	L	E
Secondary structure
SS confidence
Disorder																																													?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1o0w chain B Region: 5 - 224 Aligned: 219 Modelled: 220 Confidence: 100.0% Identity: 36% PDB header:hydrolase Chain: B: PDB Molecule:ribonuclease iii; PDBTitle: crystal structure of ribonuclease iii (tm1102) from2 thermotoga maritima at 2.0 a resolution Phyre2 PDB 1yyw chain B Region: 5 - 225 Aligned: 213 Modelled: 221 Confidence: 100.0% Identity: 38% PDB header:hydrolase/rna Chain: B: PDB Molecule:ribonuclease iii; PDBTitle: crystal structure of rnase iii from aquifex aeolicus2 complexed with double stranded rna at 2.8-angstrom3 resolution Phyre2 PDB 3c4t chain A Region: 6 - 224 Aligned: 212 Modelled: 219 Confidence: 100.0% Identity: 27% PDB header:hydrolase Chain: A: PDB Molecule:endoribonuclease dicer; PDBTitle: structure of rnaseiiib and dsrna binding domains of mouse dicer Phyre2 PDB 1o0w chain A domain 1 Region: 5 - 153 Aligned: 149 Modelled: 149 Confidence: 100.0% Identity: 36% Fold: RNase III domain-like Superfamily: RNase III domain-like Family: RNase III catalytic domain-like Phyre2 PDB 3o2r chain D Region: 5 - 145 Aligned: 141 Modelled: 141 Confidence: 100.0% Identity: 36% PDB header:hydrolase Chain: D: PDB Molecule:ribonuclease iii; PDBTitle: structural flexibility in region involved in dimer formation of2 nuclease domain of ribonuclase iii (rnc) from campylobacter jejuni Phyre2 PDB 3n3w chain A Region: 5 - 145 Aligned: 141 Modelled: 141 Confidence: 100.0% Identity: 37% PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease iii; PDBTitle: 2.2 angstrom resolution crystal structure of nuclease domain of2 ribonuclase iii (rnc) from campylobacter jejuni Phyre2 PDB 2eb1 chain B Region: 3 - 150 Aligned: 148 Modelled: 148 Confidence: 100.0% Identity: 27% PDB header:hydrolase Chain: B: PDB Molecule:endoribonuclease dicer; PDBTitle: crystal structure of the c-terminal rnase iii domain of human dicer Phyre2 PDB 2nug chain A domain 1 Region: 6 - 155 Aligned: 144 Modelled: 150 Confidence: 100.0% Identity: 34% Fold: RNase III domain-like Superfamily: RNase III domain-like Family: RNase III catalytic domain-like Phyre2 PDB 2a11 chain A Region: 7 - 149 Aligned: 142 Modelled: 143 Confidence: 100.0% Identity: 42% PDB header:transcription,translation,hydrolase Chain: A: PDB Molecule:ribonuclease iii; PDBTitle: crystal structure of nuclease domain of ribonuclase iii from2 mycobacterium tuberculosis Phyre2 PDB 3rv1 chain B Region: 9 - 148 Aligned: 140 Modelled: 140 Confidence: 100.0% Identity: 26% PDB header:rna binding protein Chain: B: PDB Molecule:k. polysporus dcr1; PDBTitle: crystal structure of the n-terminal and rnase iii domains of k.2 polysporus dcr1 e224q mutant Phyre2 PDB 3rv0 chain C Region: 16 - 146 Aligned: 129 Modelled: 131 Confidence: 100.0% Identity: 27% PDB header:rna binding protein Chain: C: PDB Molecule:k. polysporus dcr1; PDBTitle: crystal structure of k. polysporus dcr1 without the c-terminal dsrbd Phyre2 PDB 2khx chain A Region: 154 - 225 Aligned: 71 Modelled: 72 Confidence: 99.4% Identity: 35% PDB header:gene regulation,nuclear protein Chain: A: PDB Molecule:ribonuclease 3; PDBTitle: drosha double-stranded rna binding motif Phyre2 PDB 1uhz chain A Region: 154 - 226 Aligned: 71 Modelled: 73 Confidence: 99.4% Identity: 31% Fold: dsRBD-like Superfamily: dsRNA-binding domain-like Family: Double-stranded RNA-binding domain (dsRBD) Phyre2 PDB 1di2 chain A Region: 156 - 225 Aligned: 68 Modelled: 70 Confidence: 99.4% Identity: 38% Fold: dsRBD-like Superfamily: dsRNA-binding domain-like Family: Double-stranded RNA-binding domain (dsRBD) Phyre2 PDB 1o0w chain A domain 2 Region: 155 - 223 Aligned: 68 Modelled: 69 Confidence: 99.4% Identity: 35% Fold: dsRBD-like Superfamily: dsRNA-binding domain-like Family: Double-stranded RNA-binding domain (dsRBD) Phyre2 PDB 3adl chain A Region: 151 - 224 Aligned: 72 Modelled: 74 Confidence: 99.4% Identity: 32% PDB header:gene regulation/rna Chain: A: PDB Molecule:risc-loading complex subunit tarbp2; PDBTitle: structure of trbp2 and its molecule implications for mirna processing Phyre2 PDB 2cpn chain A domain 1 Region: 146 - 223 Aligned: 76 Modelled: 78 Confidence: 99.4% Identity: 34% Fold: dsRBD-like Superfamily: dsRNA-binding domain-like Family: Double-stranded RNA-binding domain (dsRBD) Phyre2 PDB 3adj chain A Region: 155 - 224 Aligned: 69 Modelled: 70 Confidence: 99.4% Identity: 25% PDB header:gene regulation Chain: A: PDB Molecule:f21m12.9 protein; PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing Phyre2 PDB 1x49 chain A domain 1 Region: 149 - 226 Aligned: 76 Modelled: 78 Confidence: 99.4% Identity: 26% Fold: dsRBD-like Superfamily: dsRNA-binding domain-like Family: Double-stranded RNA-binding domain (dsRBD) Phyre2 PDB 1qu6 chain A domain 1 Region: 146 - 226 Aligned: 79 Modelled: 81 Confidence: 99.4% Identity: 29% Fold: dsRBD-like Superfamily: dsRNA-binding domain-like Family: Double-stranded RNA-binding domain (dsRBD) Phyre2 1 c1o0wB_ 2 c1yywB_ 3 c3c4tA_ 4 d1o0wa1 5 c3o2rD_ 6 c3n3wA_ 7 c2eb1B_ 8 d2nuga1 9 c2a11A_ 10 c3rv1B_ 11 c3rv0C_ 12 c2khxA_ 13 d1uhza_ 14 d1di2a_ 15 d1o0wa2 16 c3adlA_ 17 d2cpna1 18 c3adjA_ 19 d1x49a1 20 d1qu6a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1o0wB_ 100.0 36 PDB header:hydrolase Chain: B: PDB Molecule:ribonuclease iii; PDBTitle: crystal structure of ribonuclease iii (tm1102) from2 thermotoga maritima at 2.0 a resolution 2 c1yywB_ 100.0 38 PDB header:hydrolase/rna Chain: B: PDB Molecule:ribonuclease iii; PDBTitle: crystal structure of rnase iii from aquifex aeolicus2 complexed with double stranded rna at 2.8-angstrom3 resolution 3 c3c4tA_ 100.0 27 PDB header:hydrolase Chain: A: PDB Molecule:endoribonuclease dicer; PDBTitle: structure of rnaseiiib and dsrna binding domains of mouse dicer 4 d1o0wa1 100.0 36 Fold:RNase III domain-like Superfamily:RNase III domain-like Family:RNase III catalytic domain-like 5 c3o2rD_ 100.0 36 PDB header:hydrolase Chain: D: PDB Molecule:ribonuclease iii; PDBTitle: structural flexibility in region involved in dimer formation of2 nuclease domain of ribonuclase iii (rnc) from campylobacter jejuni 6 c3n3wA_ 100.0 37 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease iii; PDBTitle: 2.2 angstrom resolution crystal structure of nuclease domain of2 ribonuclase iii (rnc) from campylobacter jejuni 7 c2eb1B_ 100.0 27 PDB header:hydrolase Chain: B: PDB Molecule:endoribonuclease dicer; PDBTitle: crystal structure of the c-terminal rnase iii domain of human dicer 8 d2nuga1 100.0 34 Fold:RNase III domain-like Superfamily:RNase III domain-like Family:RNase III catalytic domain-like 9 c2a11A_ 100.0 42 PDB header:transcription,translation,hydrolase Chain: A: PDB Molecule:ribonuclease iii; PDBTitle: crystal structure of nuclease domain of ribonuclase iii from2 mycobacterium tuberculosis 10 c3rv1B_ 100.0 26 PDB header:rna binding protein Chain: B: PDB Molecule:k. polysporus dcr1; PDBTitle: crystal structure of the n-terminal and rnase iii domains of k.2 polysporus dcr1 e224q mutant 11 c3rv0C_ 100.0 27 PDB header:rna binding protein Chain: C: PDB Molecule:k. polysporus dcr1; PDBTitle: crystal structure of k. polysporus dcr1 without the c-terminal dsrbd 12 c2khxA_ 99.4 35 PDB header:gene regulation,nuclear protein Chain: A: PDB Molecule:ribonuclease 3; PDBTitle: drosha double-stranded rna binding motif 13 d1uhza_ 99.4 31 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 14 d1di2a_ 99.4 38 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 15 d1o0wa2 99.4 35 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 16 c3adlA_ 99.4 32 PDB header:gene regulation/rna Chain: A: PDB Molecule:risc-loading complex subunit tarbp2; PDBTitle: structure of trbp2 and its molecule implications for mirna processing 17 d2cpna1 99.4 34 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 18 c3adjA_ 99.4 25 PDB header:gene regulation Chain: A: PDB Molecule:f21m12.9 protein; PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing 19 d1x49a1 99.4 26 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 20 d1qu6a1 99.4 29 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 21 d2nuga2 not modelled 99.4 38 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 22 c2l2nA_ not modelled 99.3 38 PDB header:rna binding protein, plant protein Chain: A: PDB Molecule:hyponastic leave 1; PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for the first2 dsrbd of protein hyl1 23 d1x47a1 not modelled 99.3 25 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 24 d1stua_ not modelled 99.3 27 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 25 d2dixa1 not modelled 99.3 29 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 26 c2qvwA_ not modelled 99.3 24 PDB header:hydrolase Chain: A: PDB Molecule:glp_546_48378_50642; PDBTitle: structure of giardia dicer refined against twinned data 27 d1qu6a2 not modelled 99.2 22 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 28 c3adiC_ not modelled 99.2 40 PDB header:gene regulation/rna Chain: C: PDB Molecule:f21m12.9 protein; PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing 29 d1uila_ not modelled 99.2 24 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 30 d1ekza_ not modelled 99.2 26 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 31 c2yt4A_ not modelled 99.2 27 PDB header:rna binding protein Chain: A: PDB Molecule:protein dgcr8; PDBTitle: crystal structure of human dgcr8 core 32 d1x48a1 not modelled 99.2 21 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 33 c1t4oA_ not modelled 99.2 21 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease iii; PDBTitle: crystal structure of rnt1p dsrbd 34 d1t4oa_ not modelled 99.2 21 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 35 d1whna_ not modelled 99.2 29 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 36 c1qu6A_ not modelled 99.2 29 PDB header:transferase Chain: A: PDB Molecule:protein kinase pkr; PDBTitle: structure of the double-stranded rna-binding domain of the2 protein kinase pkr reveals the molecular basis of its3 dsrna-mediated activation 37 c3llhB_ not modelled 99.2 35 PDB header:rna binding protein Chain: B: PDB Molecule:risc-loading complex subunit tarbp2; PDBTitle: crystal structure of the first dsrbd of tar rna-binding protein 2 38 d1t4na_ not modelled 99.1 19 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 39 c2l33A_ not modelled 99.1 29 PDB header:transcription regulator Chain: A: PDB Molecule:interleukin enhancer-binding factor 3; PDBTitle: solution nmr structure of drbm 2 domain of interleukin enhancer-2 binding factor 3 from homo sapiens, northeast structural genomics3 consortium target hr4527e 40 d2dmya1 not modelled 99.1 24 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 41 d1t4lb_ not modelled 99.1 24 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 42 d2b7va1 not modelled 99.1 30 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 43 d2b7ta1 not modelled 99.0 28 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 44 c2l3jA_ not modelled 99.0 28 PDB header:hydrolase/rna Chain: A: PDB Molecule:double-stranded rna-specific editase 1; PDBTitle: the solution structure of the adar2 dsrbm-rna complex reveals a2 sequence-specific read out of the minor groove 45 d1u61a_ not modelled 98.6 19 Fold:RNase III domain-like Superfamily:RNase III domain-like Family:RNase III catalytic domain-like 46 d1whqa_ not modelled 98.5 22 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 47 c2gslE_ not modelled 98.1 17 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:hypothetical protein; PDBTitle: x-ray crystal structure of protein fn1578 from fusobacterium2 nucleatum. northeast structural genomics consortium target nr1. 48 c3htxA_ not modelled 95.7 25 PDB header:transferase/rna Chain: A: PDB Molecule:hen1; PDBTitle: crystal structure of small rna methyltransferase hen1 49 c2db2A_ not modelled 95.6 17 PDB header:rna binding protein Chain: A: PDB Molecule:kiaa0890 protein; PDBTitle: solution structure of the double-stranded rna binding2 domain in kiaa0890 protein 50 c2kouA_ not modelled 87.4 16 PDB header:hydrolase Chain: A: PDB Molecule:dicer-like protein 4; PDBTitle: dicer like protein 51 d1ztda1 not modelled 65.6 27 Fold:RNase III domain-like Superfamily:RNase III domain-like Family:PF0609-like 52 c3iwfA_ not modelled 30.7 13 PDB header:transcription regulator Chain: A: PDB Molecule:transcription regulator rpir family; PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a 53 c3f6hA_ not modelled 29.5 18 PDB header:transferase Chain: A: PDB Molecule:alpha-isopropylmalate synthase; PDBTitle: crystal structure of the regulatory domain of licms in2 complexed with isoleucine - type iii 54 c1p6gE_ not modelled 17.3 22 PDB header:ribosome Chain: E: PDB Molecule:30s ribosomal protein s5; PDBTitle: real space refined coordinates of the 30s subunit fitted2 into the low resolution cryo-em map of the ef-g.gtp state3 of e. coli 70s ribosome 55 c1eg0B_ not modelled 15.3 24 PDB header:ribosome PDB COMPND: 56 d1vkza1 not modelled 14.2 26 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:BC C-terminal domain-like 57 c2qv6D_ not modelled 14.0 26 PDB header:hydrolase Chain: D: PDB Molecule:gtp cyclohydrolase iii; PDBTitle: gtp cyclohydrolase iii from m. jannaschii (mj0145)2 complexed with gtp and metal ions 58 c3bbnE_ not modelled 13.8 24 PDB header:ribosome Chain: E: PDB Molecule:ribosomal protein s5; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 59 c2ow8f_ not modelled 13.0 16 PDB header:ribosome Chain: F: PDB Molecule: PDBTitle: crystal structure of a 70s ribosome-trna complex reveals functional2 interactions and rearrangements. this file, 2ow8, contains the 30s3 ribosome subunit, two trna, and mrna molecules. 50s ribosome subunit4 is in the file 1vsa. 60 d1gsoa1 not modelled 12.8 18 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:BC C-terminal domain-like 61 d2qale2 not modelled 12.7 22 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Ribosomal S5 protein, N-terminal domain 62 c2zkqe_ not modelled 12.6 14 PDB header:ribosomal protein/rna Chain: E: PDB Molecule:rna expansion segment es6 part ii; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 63 c1kjkA_ not modelled 12.3 18 PDB header:viral protein Chain: A: PDB Molecule:integrase; PDBTitle: solution structure of the lambda integrase amino-terminal2 domain 64 d1z1ba1 not modelled 11.6 18 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:lambda integrase N-terminal domain 65 c3kwlA_ not modelled 11.6 21 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a hypothetical protein from helicobacter pylori 66 c2rpiA_ not modelled 11.4 24 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease h; PDBTitle: the nmr structure of the submillisecond folding2 intermediate of the thermus thermophilus ribonuclease h 67 d1sr9a3 not modelled 11.2 18 Fold:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain Superfamily:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain Family:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 68 d1pkpa2 not modelled 10.9 24 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Ribosomal S5 protein, N-terminal domain 69 d2o3fa1 not modelled 10.8 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:RpiR-like 70 c2o3fC_ not modelled 10.8 7 PDB header:transcription Chain: C: PDB Molecule:putative hth-type transcriptional regulator ybbh; PDBTitle: structural genomics, the crystal structure of the n-2 terminal domain of the putative transcriptional regulator3 ybbh from bacillus subtilis subsp. subtilis str. 168. 71 d2uube2 not modelled 9.3 16 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Ribosomal S5 protein, N-terminal domain 72 d1w5fa2 not modelled 8.4 27 Fold:Bacillus chorismate mutase-like Superfamily:Tubulin C-terminal domain-like Family:Tubulin, C-terminal domain 73 c1s1hE_ not modelled 6.8 16 PDB header:ribosome Chain: E: PDB Molecule:40s ribosomal protein s2; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 74 c2rqlA_ not modelled 6.5 14 PDB header:translation Chain: A: PDB Molecule:probable sigma-54 modulation protein; PDBTitle: solution structure of the e. coli ribosome hibernation2 promoting factor hpf 75 d1w7ca3 not modelled 6.2 32 Fold:Cystatin-like Superfamily:Amine oxidase N-terminal region Family:Amine oxidase N-terminal region 76 c3lhhA_ not modelled 5.7 46 PDB header:membrane protein Chain: A: PDB Molecule:cbs domain protein; PDBTitle: the crystal structure of cbs domain protein from shewanella2 oneidensis mr-1. 77 d1kxpd2 not modelled 5.2 13 Fold:Serum albumin-like Superfamily:Serum albumin-like Family:Serum albumin-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0