Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	S	E	V	L	S	V	K	E	K	I	G	Y	G	M	G	D	A	A	S	H	I	I	F	D	N	V	M	L	Y	M	M	F	F	Y	T	D	I	F	G	I	P	A	G	F	V	G	T	M	F	L	V	A	R	A	L	D	A	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	D	P	C	M	G	L	L	A	D	R	T	R	S	R	W	G	K	F	R	P	W	V	L	F	G	A	L	P	F	G	I	V	C	V	L	A	Y	S	T	P	D	L	S	M	N	G	K	M	I	Y	A	A	I	T	Y	T	L	L	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	L	Y	T	V	V	N	I	P	Y	C	A	L	G	G	V	I	T	N	D	P	T	Q	R	I	S	L	Q	S	W	R	F	V	L	A	T	A	G	G	M	L	S	T	V	L	M	M	P	L	V	N	L	I	G	G	D	N	K	P	L
Secondary structure
SS confidence
Disorder																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	F	Q	G	G	I	A	V	L	S	V	V	A	F	M	M	L	A	F	C	F	F	T	T	K	E	R	V	E	A	P	P	T	T	T	S	M	R	E	D	L	R	D	I	W	Q	N	D	Q	W	R	I	V	G	L	L	T	I	F	N
Secondary structure
SS confidence
Disorder																													?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		I	L	A	V	C	V	R	G	G	A	M	M	Y	Y	V	T	W	I	L	G	T	P	E	V	F	V	A	F	L	T	T	Y	C	V	G	N	L	I	G	S	A	L	A	K	P	L	T	D	W	K	C	K	V	T	I	F	W	W	T	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	L	L	A	V	I	S	L	A	M	F	F	V	P	M	Q	A	S	I	T	M	F	V	F	I	F	V	I	G	V	L	H	Q	L	V	T	P	I	Q	W	V	M	M	S	D	T	V	D	Y	G	E	W	C	N	G	K	R	L	T	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		I	S	F	A	G	T	L	F	V	L	K	L	G	L	A	F	G	G	A	L	I	G	W	M	L	A	Y	G	G	Y	D	A	A	E	K	A	Q	N	S	A	T	I	S	I	I	I	A	L	F	T	I	V	P	A	I	C	Y	L	L	S
Secondary structure
SS confidence
Disorder																																			?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Sequence		A	I	I	A	K	R	Y	Y	S	L	T	T	H	N	L	K	T	V	M	E	Q	L	A	Q	G	K	R	R	C	Q	Q	Q	F	T	S	Q	E	V	Q	N
Secondary structure
SS confidence
Disorder																												?	?	?	?	?	?	?	?	?	?		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1pv7 chain A Region: 6 - 439 Aligned: 408 Modelled: 422 Confidence: 100.0% Identity: 12% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: LacY-like proton/sugar symporter Phyre2 PDB 1pw4 chain A Region: 4 - 442 Aligned: 409 Modelled: 423 Confidence: 99.9% Identity: 14% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: Glycerol-3-phosphate transporter Phyre2 PDB 2gfp chain A Region: 12 - 430 Aligned: 372 Modelled: 391 Confidence: 99.9% Identity: 11% PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Phyre2 PDB 3o7p chain A Region: 9 - 431 Aligned: 385 Modelled: 407 Confidence: 99.8% Identity: 11% PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Phyre2 PDB 2xut chain C Region: 16 - 420 Aligned: 388 Modelled: 400 Confidence: 99.7% Identity: 9% PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. Phyre2 PDB 3qnq chain D Region: 368 - 460 Aligned: 80 Modelled: 93 Confidence: 79.1% Identity: 11% PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Phyre2 PDB 3hd6 chain A Region: 212 - 455 Aligned: 222 Modelled: 244 Confidence: 34.9% Identity: 10% PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg Phyre2 PDB 3b9y chain A Region: 269 - 459 Aligned: 174 Modelled: 175 Confidence: 29.1% Identity: 11% PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein Phyre2 PDB 1y7u chain A domain 1 Region: 428 - 460 Aligned: 33 Modelled: 33 Confidence: 19.4% Identity: 12% Fold: Thioesterase/thiol ester dehydrase-isomerase Superfamily: Thioesterase/thiol ester dehydrase-isomerase Family: 4HBT-like Phyre2 PDB 2rdc chain A Region: 423 - 456 Aligned: 34 Modelled: 33 Confidence: 15.3% Identity: 21% PDB header:lipid binding protein Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative lipid binding protein (gsu0061) from2 geobacter sulfurreducens pca at 1.80 a resolution Phyre2 PDB 1jym chain A Region: 429 - 460 Aligned: 32 Modelled: 30 Confidence: 15.3% Identity: 16% Fold: Peptide deformylase Superfamily: Peptide deformylase Family: Peptide deformylase Phyre2 PDB 1by0 chain A Region: 432 - 451 Aligned: 20 Modelled: 20 Confidence: 15.3% Identity: 15% PDB header:rna binding protein Chain: A: PDB Molecule:protein (hepatitis delta antigen); PDBTitle: n-terminal leucine-repeat region of hepatitis delta antigen Phyre2 PDB 1zxa chain B Region: 432 - 451 Aligned: 20 Modelled: 20 Confidence: 15.2% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:cgmp-dependent protein kinase 1, alpha isozyme; PDBTitle: solution structure of the coiled-coil domain of cgmp-2 dependent protein kinase ia Phyre2 PDB 3mnf chain A Region: 414 - 459 Aligned: 46 Modelled: 46 Confidence: 14.1% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pac2 family protein; PDBTitle: crystal structure of pac2 family protein from streptomyces avermitilis2 ma Phyre2 PDB 3d9s chain B Region: 407 - 444 Aligned: 38 Modelled: 38 Confidence: 13.5% Identity: 16% PDB header:membrane protein Chain: B: PDB Molecule:aquaporin-5; PDBTitle: human aquaporin 5 (aqp5) - high resolution x-ray structure Phyre2 PDB 2f23 chain A domain 1 Region: 429 - 459 Aligned: 29 Modelled: 31 Confidence: 12.8% Identity: 31% Fold: Long alpha-hairpin Superfamily: GreA transcript cleavage protein, N-terminal domain Family: GreA transcript cleavage protein, N-terminal domain Phyre2 PDB 2l2l chain B Region: 431 - 456 Aligned: 26 Modelled: 26 Confidence: 11.6% Identity: 12% PDB header:transferase Chain: B: PDB Molecule:methyl-cpg-binding domain protein 2; PDBTitle: solution structure of the coiled-coil complex between mbd2 and2 p66alpha Phyre2 PDB 1oqw chain A Region: 408 - 455 Aligned: 48 Modelled: 48 Confidence: 11.0% Identity: 13% Fold: Pili subunits Superfamily: Pili subunits Family: Pilin Phyre2 PDB 1grj chain A domain 1 Region: 428 - 456 Aligned: 29 Modelled: 29 Confidence: 10.3% Identity: 14% Fold: Long alpha-hairpin Superfamily: GreA transcript cleavage protein, N-terminal domain Family: GreA transcript cleavage protein, N-terminal domain Phyre2 PDB 1j4n chain A Region: 407 - 441 Aligned: 35 Modelled: 35 Confidence: 9.5% Identity: 17% Fold: Aquaporin-like Superfamily: Aquaporin-like Family: Aquaporin-like Phyre2 1 d1pv7a_ 2 d1pw4a_ 3 c2gfpA_ 4 c3o7pA_ 5 c2xutC_ 6 c3qnqD_ 7 c3hd6A_ 8 c3b9yA_ 9 d1y7ua1 10 c2rdcA_ 11 d1jyma_ 12 c1by0A_ 13 c1zxaB_ 14 c3mnfA_ 15 c3d9sB_ 16 d2f23a1 17 c2l2lB_ 18 d1oqwa_ 19 d1grja1 20 d1j4na_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1pv7a_ 100.0 12 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:LacY-like proton/sugar symporter 2 d1pw4a_ 99.9 14 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter 3 c2gfpA_ 99.9 11 PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli 4 c3o7pA_ 99.8 11 PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) 5 c2xutC_ 99.7 9 PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. 6 c3qnqD_ 79.1 11 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 7 c3hd6A_ 34.9 10 PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg 8 c3b9yA_ 29.1 11 PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein 9 d1y7ua1 19.4 12 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 10 c2rdcA_ 15.3 21 PDB header:lipid binding protein Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative lipid binding protein (gsu0061) from2 geobacter sulfurreducens pca at 1.80 a resolution 11 d1jyma_ 15.3 16 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 12 c1by0A_ 15.3 15 PDB header:rna binding protein Chain: A: PDB Molecule:protein (hepatitis delta antigen); PDBTitle: n-terminal leucine-repeat region of hepatitis delta antigen 13 c1zxaB_ 15.2 20 PDB header:transferase Chain: B: PDB Molecule:cgmp-dependent protein kinase 1, alpha isozyme; PDBTitle: solution structure of the coiled-coil domain of cgmp-2 dependent protein kinase ia 14 c3mnfA_ 14.1 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pac2 family protein; PDBTitle: crystal structure of pac2 family protein from streptomyces avermitilis2 ma 15 c3d9sB_ 13.5 16 PDB header:membrane protein Chain: B: PDB Molecule:aquaporin-5; PDBTitle: human aquaporin 5 (aqp5) - high resolution x-ray structure 16 d2f23a1 12.8 31 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 17 c2l2lB_ 11.6 12 PDB header:transferase Chain: B: PDB Molecule:methyl-cpg-binding domain protein 2; PDBTitle: solution structure of the coiled-coil complex between mbd2 and2 p66alpha 18 d1oqwa_ 11.0 13 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 19 d1grja1 10.3 14 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 20 d1j4na_ 9.5 17 Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like 21 c1ymgA_ not modelled 9.4 11 PDB header:membrane protein Chain: A: PDB Molecule:lens fiber major intrinsic protein; PDBTitle: the channel architecture of aquaporin o at 2.2 angstrom resolution 22 d1ymga1 not modelled 9.4 11 Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like 23 d2pila_ not modelled 9.4 7 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 24 c3bpqC_ not modelled 8.7 13 PDB header:toxin Chain: C: PDB Molecule:antitoxin relb3; PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii 25 c1zvuA_ not modelled 8.3 13 PDB header:isomerase Chain: A: PDB Molecule:topoisomerase iv subunit a; PDBTitle: structure of the full-length e. coli parc subunit 26 d1f6ga_ not modelled 7.8 13 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 27 d1yuwa1 not modelled 7.4 13 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain Family:Heat shock protein 70kD (HSP70), peptide-binding domain 28 c2yxyA_ not modelled 7.3 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical conserved protein, gk0453; PDBTitle: crystarl structure of hypothetical conserved protein, gk0453 29 c1m46B_ not modelled 7.3 18 PDB header:cell cycle protein Chain: B: PDB Molecule:iq4 motif from myo2p, a class v myosin; PDBTitle: crystal structure of mlc1p bound to iq4 of myo2p, a class v2 myosin 30 d1cg2a2 not modelled 7.3 10 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 31 c2novD_ not modelled 7.3 23 PDB header:isomerase Chain: D: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: breakage-reunion domain of s.pneumoniae topo iv: crystal2 structure of a gram-positive quinolone target 32 c3he4A_ not modelled 7.1 17 PDB header:de novo protein Chain: A: PDB Molecule:synzip6; PDBTitle: heterospecific coiled-coil pair synzip5:synzip6 33 c3qx3B_ not modelled 7.0 19 PDB header:isomerase/dna/isomerase inhibitor Chain: B: PDB Molecule:dna topoisomerase 2-beta; PDBTitle: human topoisomerase iibeta in complex with dna and etoposide 34 c2wl2B_ not modelled 7.0 16 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of n-terminal domain of gyra with the2 antibiotic simocyclinone d8 35 d1ab4a_ not modelled 7.0 16 Fold:Type II DNA topoisomerase Superfamily:Type II DNA topoisomerase Family:Type II DNA topoisomerase 36 c1a92B_ not modelled 6.9 15 PDB header:leucine zipper Chain: B: PDB Molecule:delta antigen; PDBTitle: oligomerization domain of hepatitis delta antigen 37 c2y6xA_ not modelled 6.9 11 PDB header:photosynthesis Chain: A: PDB Molecule:photosystem ii 11 kd protein; PDBTitle: structure of psb27 from thermosynechococcus elongatus 38 d1iruc_ not modelled 6.9 4 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 39 d1iwpg_ not modelled 6.7 14 Fold:Open three-helical up-and-down bundle Superfamily:Diol dehydratase, gamma subunit Family:Diol dehydratase, gamma subunit 40 d1eexg_ not modelled 6.7 19 Fold:Open three-helical up-and-down bundle Superfamily:Diol dehydratase, gamma subunit Family:Diol dehydratase, gamma subunit 41 c1uc5M_ not modelled 6.7 19 PDB header:lyase Chain: M: PDB Molecule:diol dehydrase gamma subunit; PDBTitle: structure of diol dehydratase complexed with (r)-1,2-2 propanediol 42 c3sokB_ not modelled 6.6 17 PDB header:cell adhesion Chain: B: PDB Molecule:fimbrial protein; PDBTitle: dichelobacter nodosus pilin fima 43 c2w6jG_ not modelled 6.6 17 PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial; PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 5. 44 d2f6qa1 not modelled 6.5 17 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 45 c2w8aC_ not modelled 6.4 7 PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate 46 d1bjta_ not modelled 6.4 16 Fold:Type II DNA topoisomerase Superfamily:Type II DNA topoisomerase Family:Type II DNA topoisomerase 47 c1bjtA_ not modelled 6.4 16 PDB header:topoisomerase Chain: A: PDB Molecule:topoisomerase ii; PDBTitle: topoisomerase ii residues 409-1201 48 d2jdig1 not modelled 6.3 17 Fold:Pyruvate kinase C-terminal domain-like Superfamily:ATP synthase (F1-ATPase), gamma subunit Family:ATP synthase (F1-ATPase), gamma subunit 49 c3eh0C_ not modelled 6.3 24 PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n- PDBTitle: crystal structure of lpxd from escherichia coli 50 c2hlwA_ not modelled 6.3 15 PDB header:ligase, signaling protein Chain: A: PDB Molecule:ubiquitin-conjugating enzyme e2 variant 1; PDBTitle: solution structure of the human ubiquitin-conjugating2 enzyme variant uev1a 51 c1dipA_ not modelled 6.1 10 PDB header:acetylation Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures 52 d1kqfc_ not modelled 6.0 11 Fold:Heme-binding four-helical bundle Superfamily:Transmembrane di-heme cytochromes Family:Formate dehydrogenase N, cytochrome (gamma) subunit 53 d1u69a_ not modelled 6.0 27 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:3-demethylubiquinone-9 3-methyltransferase 54 c1nohB_ not modelled 5.9 8 PDB header:viral protein Chain: B: PDB Molecule:head morphogenesis protein; PDBTitle: the structure of bacteriophage phi29 scaffolding protein2 gp7 after prohead assembly 55 c2inrA_ not modelled 5.8 19 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: crystal structure of a 59 kda fragment of topoisomerase iv subunit a2 (grla) from staphylococcus aureus 56 c2xokG_ not modelled 5.8 14 PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial; PDBTitle: refined structure of yeast f1c10 atpase complex to 3 a2 resolution 57 c2kncB_ not modelled 5.8 15 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 58 c2f6qA_ not modelled 5.8 17 PDB header:isomerase Chain: A: PDB Molecule:peroxisomal 3,2-trans-enoyl-coa isomerase; PDBTitle: the crystal structure of human peroxisomal delta3, delta2 enoyl coa2 isomerase (peci) 59 d1hr6a2 not modelled 5.7 14 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:MPP-like 60 c2owyB_ not modelled 5.7 10 PDB header:dna binding protein Chain: B: PDB Molecule:recombination-associated protein rdgc; PDBTitle: the recombination-associated protein rdgc adopts a novel toroidal2 architecture for dna binding 61 d2fgea3 not modelled 5.6 10 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:MPP-like 62 c2hjmB_ not modelled 5.6 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein pf1176; PDBTitle: crystal structure of a singleton protein pf1176 from p. furiosus 63 c1lq7A_ not modelled 5.3 7 PDB header:de novo protein Chain: A: PDB Molecule:alpha3w; PDBTitle: de novo designed protein model of radical enzymes 64 c3ifzA_ not modelled 5.2 16 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of the first part of the mycobacterium tuberculosis2 dna gyrase reaction core: the breakage and reunion domain at 2.7 a3 resolution 65 c3l60A_ not modelled 5.2 13 PDB header:oxidoreductase Chain: A: PDB Molecule:branched-chain alpha-keto acid dehydrogenase; PDBTitle: crystal structure of branched-chain alpha-keto acid2 dehydrogenase subunit e2 from mycobacterium tuberculosis 66 c2g9pA_ not modelled 5.1 17 PDB header:antimicrobial protein Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a; PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom 67 c2pnvA_ not modelled 5.1 8 PDB header:membrane protein Chain: A: PDB Molecule:small conductance calcium-activated potassium PDBTitle: crystal structure of the leucine zipper domain of small-2 conductance ca2+-activated k+ (skca) channel from rattus3 norvegicus 68 c1kilE_ not modelled 5.1 10 PDB header:membrane protein Chain: E: PDB Molecule:complexin i snare-complex binding region; PDBTitle: three-dimensional structure of the complexin/snare complex 69 c2rkkA_ not modelled 5.1 10 PDB header:lipid transport Chain: A: PDB Molecule:vacuolar protein sorting-associated protein vta1; PDBTitle: crystal structure of s.cerevisiae vta1 n-terminal domain 70 c2xcqA_ not modelled 5.0 16 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit b, dna gyrase subunit a; PDBTitle: the 2.98a crystal structure of the catalytic core (b'a'2 region) of staphylococcus aureus dna gyrase 71 d2cqea1 not modelled 5.0 17 Fold:CCCH zinc finger Superfamily:CCCH zinc finger Family:CCCH zinc finger

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0