Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	Q	D	S	K	V	F	F	R	I	F	L	G	I	G	L	V	L	I	L	I	S	V	V	V	F	Y	N	Q	F	T	Y	S	K	D	A	I	H	T	E	G	V	I	V	D	T	V	W	H	S	S	H	S	H	R	T	G	K	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																												?					?										?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	S	W	Y	P	V	V	A	F	R	P	T	P	D	Y	T	L	I	F	N	S	S	I	G	S	D	F	Y	E	D	S	E	G	D	K	V	N	V	Y	Y	S	P	G	H	P	E	K	A	E	I	N	N	P	W	V	N	F	F	K	W
Secondary structure
SS confidence
Disorder		?																						?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Sequence		G	F	I	G	I	M	G	V	I	F	I	A	V	G	L	L	I	S	M	P	S	S	K	K	S	R	R	K	R	K	S	R	P
Secondary structure
SS confidence
Disorder																							?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2klu chain A Region: 118 - 152 Aligned: 35 Modelled: 35 Confidence: 87.9% Identity: 20% PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 Phyre2 PDB 3db3 chain A Region: 41 - 107 Aligned: 59 Modelled: 67 Confidence: 86.2% Identity: 17% PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1; PDBTitle: crystal structure of the tandem tudor domains of the e3 ubiquitin-2 protein ligase uhrf1 in complex with trimethylated histone h3-k93 peptide Phyre2 PDB 1bco chain A domain 1 Region: 92 - 112 Aligned: 21 Modelled: 21 Confidence: 79.3% Identity: 19% Fold: mu transposase, C-terminal domain Superfamily: mu transposase, C-terminal domain Family: mu transposase, C-terminal domain Phyre2 PDB 2jp3 chain A Region: 101 - 153 Aligned: 50 Modelled: 53 Confidence: 76.4% Identity: 14% PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles Phyre2 PDB 2l2t chain A Region: 119 - 150 Aligned: 32 Modelled: 32 Confidence: 50.6% Identity: 28% PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain Phyre2 PDB 1bco chain A Region: 92 - 112 Aligned: 21 Modelled: 21 Confidence: 50.2% Identity: 19% PDB header:transposase Chain: A: PDB Molecule:bacteriophage mu transposase; PDBTitle: bacteriophage mu transposase core domain Phyre2 PDB 2jqo chain A Region: 72 - 113 Aligned: 42 Modelled: 41 Confidence: 32.2% Identity: 19% PDB header:structural genomics Chain: A: PDB Molecule:hypothetical protein yoba; PDBTitle: nmr solution structure of bacillus subtilis yoba 21-120:2 northeast structural genomics consortium target sr547 Phyre2 PDB 1afo chain B Region: 121 - 148 Aligned: 28 Modelled: 28 Confidence: 31.9% Identity: 18% PDB header:integral membrane protein Chain: B: PDB Molecule:glycophorin a; PDBTitle: dimeric transmembrane domain of human glycophorin a, nmr,2 20 structures Phyre2 PDB 2jo1 chain A Region: 124 - 153 Aligned: 30 Modelled: 30 Confidence: 29.2% Identity: 17% PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles Phyre2 PDB 1kqf chain B Region: 102 - 150 Aligned: 49 Modelled: 49 Confidence: 25.9% Identity: 12% PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli Phyre2 PDB 2k52 chain A Region: 34 - 111 Aligned: 65 Modelled: 78 Confidence: 22.6% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1198; PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b Phyre2 PDB 1v43 chain A domain 2 Region: 34 - 104 Aligned: 56 Modelled: 65 Confidence: 21.8% Identity: 13% Fold: OB-fold Superfamily: MOP-like Family: ABC-transporter additional domain Phyre2 PDB 3f1z chain F Region: 32 - 98 Aligned: 61 Modelled: 67 Confidence: 20.6% Identity: 31% PDB header:dna binding protein Chain: F: PDB Molecule:putative nucleic acid-binding lipoprotein; PDBTitle: crystal structure of putative nucleic acid-binding lipoprotein2 (yp_001337197.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 2.46 a resolution Phyre2 PDB 1ugp chain B Region: 87 - 115 Aligned: 28 Modelled: 29 Confidence: 19.5% Identity: 18% Fold: SH3-like barrel Superfamily: Electron transport accessory proteins Family: Nitrile hydratase beta chain Phyre2 PDB 3dwq chain D Region: 90 - 103 Aligned: 14 Modelled: 14 Confidence: 16.5% Identity: 43% PDB header:toxin Chain: D: PDB Molecule:subtilase cytotoxin, subunit b; PDBTitle: crystal structure of the a-subunit of the ab5 toxin from e.2 coli with neu5gc-2,3gal-1,3glcnac Phyre2 PDB 2l0c chain A Region: 38 - 100 Aligned: 61 Modelled: 63 Confidence: 16.5% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative membrane protein; PDBTitle: solution nmr structure of protein sty4237 (residues 36-120) from2 salmonella enterica, northeast structural genomics consortium target3 slr115 Phyre2 PDB 1y5i chain C domain 1 Region: 118 - 150 Aligned: 33 Modelled: 33 Confidence: 15.7% Identity: 18% Fold: Heme-binding four-helical bundle Superfamily: Respiratory nitrate reductase 1 gamma chain Family: Respiratory nitrate reductase 1 gamma chain Phyre2 PDB 3qz9 chain D Region: 87 - 115 Aligned: 28 Modelled: 29 Confidence: 15.6% Identity: 18% PDB header:lyase Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida. Phyre2 PDB 2aho chain B domain 2 Region: 37 - 111 Aligned: 62 Modelled: 62 Confidence: 14.8% Identity: 13% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 2dxc chain G Region: 87 - 115 Aligned: 28 Modelled: 29 Confidence: 14.3% Identity: 11% PDB header:hydrolase Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha; PDBTitle: recombinant thiocyanate hydrolase, fully-matured form Phyre2 1 c2kluA_ 2 c3db3A_ 3 d1bcoa1 4 c2jp3A_ 5 c2l2tA_ 6 c1bcoA_ 7 c2jqoA_ 8 c1afoB_ 9 c2jo1A_ 10 c1kqfB_ 11 c2k52A_ 12 d1v43a2 13 c3f1zF_ 14 d1ugpb_ 15 c3dwqD_ 16 c2l0cA_ 17 d1y5ic1 18 c3qz9D_ 19 d2ahob2 20 c2dxcG_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2kluA_ 87.9 20 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 2 c3db3A_ 86.2 17 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1; PDBTitle: crystal structure of the tandem tudor domains of the e3 ubiquitin-2 protein ligase uhrf1 in complex with trimethylated histone h3-k93 peptide 3 d1bcoa1 79.3 19 Fold:mu transposase, C-terminal domain Superfamily:mu transposase, C-terminal domain Family:mu transposase, C-terminal domain 4 c2jp3A_ 76.4 14 PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles 5 c2l2tA_ 50.6 28 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain 6 c1bcoA_ 50.2 19 PDB header:transposase Chain: A: PDB Molecule:bacteriophage mu transposase; PDBTitle: bacteriophage mu transposase core domain 7 c2jqoA_ 32.2 19 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical protein yoba; PDBTitle: nmr solution structure of bacillus subtilis yoba 21-120:2 northeast structural genomics consortium target sr547 8 c1afoB_ 31.9 18 PDB header:integral membrane protein Chain: B: PDB Molecule:glycophorin a; PDBTitle: dimeric transmembrane domain of human glycophorin a, nmr,2 20 structures 9 c2jo1A_ 29.2 17 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 10 c1kqfB_ 25.9 12 PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli 11 c2k52A_ 22.6 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1198; PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b 12 d1v43a2 21.8 13 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 13 c3f1zF_ 20.6 31 PDB header:dna binding protein Chain: F: PDB Molecule:putative nucleic acid-binding lipoprotein; PDBTitle: crystal structure of putative nucleic acid-binding lipoprotein2 (yp_001337197.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 2.46 a resolution 14 d1ugpb_ 19.5 18 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 15 c3dwqD_ 16.5 43 PDB header:toxin Chain: D: PDB Molecule:subtilase cytotoxin, subunit b; PDBTitle: crystal structure of the a-subunit of the ab5 toxin from e.2 coli with neu5gc-2,3gal-1,3glcnac 16 c2l0cA_ 16.5 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative membrane protein; PDBTitle: solution nmr structure of protein sty4237 (residues 36-120) from2 salmonella enterica, northeast structural genomics consortium target3 slr115 17 d1y5ic1 15.7 18 Fold:Heme-binding four-helical bundle Superfamily:Respiratory nitrate reductase 1 gamma chain Family:Respiratory nitrate reductase 1 gamma chain 18 c3qz9D_ 15.6 18 PDB header:lyase Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida. 19 d2ahob2 14.8 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 20 c2dxcG_ 14.3 11 PDB header:hydrolase Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha; PDBTitle: recombinant thiocyanate hydrolase, fully-matured form 21 c3kdpH_ not modelled 14.1 26 PDB header:hydrolase Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 22 c3kdpG_ not modelled 14.1 26 PDB header:hydrolase Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 23 d1v29b_ not modelled 13.5 7 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 24 c2ky9A_ not modelled 13.3 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ydhk; PDBTitle: solution nmr structure of ydhk c-terminal domain from b.subtilis,2 northeast structural genomics consortium target target sr518 25 d2qdyb1 not modelled 12.6 15 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 26 d1vqoq1 not modelled 12.2 31 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 27 d2e74f1 not modelled 11.9 20 Fold:Single transmembrane helix Superfamily:PetM subunit of the cytochrome b6f complex Family:PetM subunit of the cytochrome b6f complex 28 c2kpeB_ not modelled 11.0 17 PDB header:membrane protein Chain: B: PDB Molecule:glycophorin-a; PDBTitle: refined structure of glycophorin a transmembrane segment dimer in dpc2 micelles 29 c2kpeA_ not modelled 11.0 17 PDB header:membrane protein Chain: A: PDB Molecule:glycophorin-a; PDBTitle: refined structure of glycophorin a transmembrane segment dimer in dpc2 micelles 30 c1s1iQ_ not modelled 10.9 14 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein l21-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 31 c3i4oA_ not modelled 10.3 32 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 32 d1wjsa_ not modelled 10.3 19 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:MBT repeat 33 c2qtsA_ not modelled 10.3 12 PDB header:membrane protein Chain: A: PDB Molecule:acid-sensing ion channel; PDBTitle: structure of an acid-sensing ion channel 1 at 1.9 a resolution and low2 ph 34 d3d31a1 not modelled 10.3 9 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 35 c2zkrq_ not modelled 9.3 20 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule:rna expansion segment es31 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 36 d1hr0w_ not modelled 9.2 37 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 37 c2kncA_ not modelled 9.0 23 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 38 c3cm1C_ not modelled 8.4 19 PDB header:cell cycle Chain: C: PDB Molecule:ssga-like sporulation-specific cell division protein; PDBTitle: crystal structure of ssga-like sporulation-specific cell division2 protein (yp_290167.1) from thermobifida fusca yx-er1 at 2.60 a3 resolution 39 d2k5qa1 not modelled 8.3 9 Fold:OB-fold Superfamily:BC4932-like Family:BC4932-like 40 d1fvia1 not modelled 8.0 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 41 d1fftb2 not modelled 7.6 11 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 42 c2ahoB_ not modelled 7.6 11 PDB header:translation Chain: B: PDB Molecule:translation initiation factor 2 alpha subunit; PDBTitle: structure of the archaeal initiation factor eif2 alpha-2 gamma heterodimer from sulfolobus solfataricus complexed3 with gdpnp 43 c2k1aA_ not modelled 7.6 23 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 44 d1h9ra2 not modelled 7.5 15 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 45 c2jwaA_ not modelled 7.5 9 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 46 c3j0cH_ not modelled 7.5 11 PDB header:virus Chain: H: PDB Molecule:e2 envelope glycoprotein; PDBTitle: models of e1, e2 and cp of venezuelan equine encephalitis virus tc-832 strain restrained by a near atomic resolution cryo-em map 47 d1qcsa1 not modelled 7.3 32 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 48 d1f20a1 not modelled 7.1 11 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:NADPH-cytochrome p450 reductase FAD-binding domain-like 49 c2zxeG_ not modelled 6.7 17 PDB header:hydrolase/transport protein Chain: G: PDB Molecule:phospholemman-like protein; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 50 c2e6zA_ not modelled 6.7 31 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 51 c2xzn2_ not modelled 6.5 27 PDB header:ribosome Chain: 2: PDB Molecule:40s ribosomal protein s8; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 52 d1y14b1 not modelled 6.3 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 53 c2zklA_ not modelled 6.3 17 PDB header:isomerase Chain: A: PDB Molecule:capsular polysaccharide synthesis enzyme cap5f; PDBTitle: crystal structure of capsular polysaccharide assembling protein capf2 from staphylococcus aureus 54 d1h9ma2 not modelled 6.3 6 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 55 c2ks1B_ not modelled 6.2 11 PDB header:transferase Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation 56 d1h6la_ not modelled 6.2 18 Fold:6-bladed beta-propeller Superfamily:Thermostable phytase (3-phytase) Family:Thermostable phytase (3-phytase) 57 c3u5cI_ not modelled 6.0 36 PDB header:ribosome Chain: I: PDB Molecule:40s ribosomal protein s8-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 58 c4a1aP_ not modelled 6.0 14 PDB header:ribosome Chain: P: PDB Molecule:60s ribosomal protein l21; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 59 c3iz5U_ not modelled 6.0 21 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 60 c1vf5G_ not modelled 5.8 21 PDB header:photosynthesis Chain: G: PDB Molecule:protein pet g; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 61 d1vf5g_ not modelled 5.8 21 Fold:Single transmembrane helix Superfamily:PetG subunit of the cytochrome b6f complex Family:PetG subunit of the cytochrome b6f complex 62 c1ddiA_ not modelled 5.7 8 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase [nadph] flavoprotein alpha- PDBTitle: crystal structure of sir-fp60 63 c2k21A_ not modelled 5.6 13 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 64 d3bn0a1 not modelled 5.5 15 Fold:Ribosomal protein S16 Superfamily:Ribosomal protein S16 Family:Ribosomal protein S16 65 c2kcyA_ not modelled 5.5 25 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s8e; PDBTitle: solution structure of ribosomal protein s8e from2 methanothermobacter thermautotrophicus,3 northeaststructural genomics consortium (nesg) target tr71d 66 c2kcoA_ not modelled 5.5 18 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s8e; PDBTitle: solution nmr structure of ribosomal protein sso0164 from2 sulfolobus solfataricus. northeast structural genomics3 consortium (nesg) target sst4. 67 c1fftG_ not modelled 5.4 14 PDB header:oxidoreductase Chain: G: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli 68 c3izcU_ not modelled 5.3 21 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein rpl21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 69 d1q46a2 not modelled 5.3 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 70 d1oi1a2 not modelled 5.3 12 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:MBT repeat 71 d1g2914 not modelled 5.2 16 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 72 c2khjA_ not modelled 5.2 21 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1 73 d2e74g1 not modelled 5.2 19 Fold:Single transmembrane helix Superfamily:PetG subunit of the cytochrome b6f complex Family:PetG subunit of the cytochrome b6f complex 74 c2khiA_ not modelled 5.1 29 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 4 of the e. coli ribosomal2 protein s1

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0