Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	L	N	L	V	S	E	Q	L	L	A	A	N	G	L	K	H	Q	D	L	F	A	I	L	G	Q	L	A	E	R	R	L	D	Y	G	D	L	Y	F	Q	S	S	Y	H	E	S	W	V	L	E	D	R	I	I	K	D	G	S	Y
Secondary structure
SS confidence
Disorder		?	?		?								?	?	?		?																																										?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	I	D	Q	G	V	G	V	R	A	I	S	G	E	K	T	G	F	A	Y	A	D	Q	I	S	L	L	A	L	E	Q	S	A	Q	A	A	R	T	I	V	R	D	S	G	D	G	K	V	Q	T	L	G	A	V	E	H	S	P	L	Y
Secondary structure
SS confidence
Disorder		?	?	?																																										?		?							?	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	S	V	D	P	L	Q	S	M	S	R	E	E	K	L	D	I	L	R	R	V	D	K	V	A	R	E	A	D	K	R	V	Q	E	V	T	A	S	L	S	G	V	Y	E	L	I	L	V	A	A	T	D	G	T	L	A	A	D	V	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	L	V	R	L	S	V	S	V	L	V	E	E	D	G	K	R	E	R	G	A	S	G	G	G	G	R	F	G	Y	E	F	F	L	A	D	L	D	G	E	V	R	A	D	A	W	A	K	E	A	V	R	M	A	L	V	N	L	S	A
Secondary structure
SS confidence
Disorder																?				?	?	?	?	?	?	?	?											?	?	?																			?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	A	A	P	A	G	T	M	P	V	V	L	G	A	G	W	P	G	V	L	L	H	E	A	V	G	H	G	L	E	G	D	F	N	R	R	G	T	S	V	F	S	G	Q	V	G	E	L	V	A	S	E	L	C	T	V	V	D	D	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?																										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		T	M	V	D	R	R	G	S	V	A	I	D	D	E	G	T	P	G	Q	Y	N	V	L	I	E	N	G	I	L	K	G	Y	M	Q	D	K	L	N	A	R	L	M	G	M	T	P	T	G	N	G	R	R	E	S	Y	A	H	L	P	M
Secondary structure
SS confidence
Disorder				?																																																?	?	?		?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		P	R	M	T	N	T	Y	M	L	P	G	K	S	T	P	Q	E	I	I	E	S	V	E	Y	G	I	Y	A	P	N	F	G	G	G	Q	V	D	I	T	S	G	K	F	V	F	S	T	S	E	A	Y	L	I	E	N	G	K	V	T	K
Secondary structure
SS confidence
Disorder																																		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		P	V	K	G	A	T	L	I	G	S	G	I	E	T	M	Q	Q	I	S	M	V	G	N	D	L	K	L	D	N	G	V	G	V	C	G	K	E	G	Q	S	L	P	V	G	V	G	Q	P	T	L	K	V	D	N	L	T	V	G	G	T
Secondary structure
SS confidence
Disorder																																	?											?																?	?
Disorder confidence
		.
Sequence		A
Secondary structure
SS confidence
Disorder		?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3qtd chain C Region: 18 - 480 Aligned: 429 Modelled: 418 Confidence: 100.0% Identity: 21% PDB header:gene regulation Chain: C: PDB Molecule:pmba protein; PDBTitle: crystal structure of putative modulator of gyrase (pmba) from2 pseudomonas aeruginosa pao1 Phyre2 PDB 1vpb chain A Region: 5 - 480 Aligned: 431 Modelled: 450 Confidence: 100.0% Identity: 21% Fold: Putative modulator of DNA gyrase, PmbA/TldD Superfamily: Putative modulator of DNA gyrase, PmbA/TldD Family: Putative modulator of DNA gyrase, PmbA/TldD Phyre2 PDB 1vl4 chain A Region: 18 - 478 Aligned: 424 Modelled: 447 Confidence: 100.0% Identity: 20% Fold: Putative modulator of DNA gyrase, PmbA/TldD Superfamily: Putative modulator of DNA gyrase, PmbA/TldD Family: Putative modulator of DNA gyrase, PmbA/TldD Phyre2 PDB 1bkn chain A Region: 21 - 53 Aligned: 33 Modelled: 33 Confidence: 35.7% Identity: 6% PDB header:dna repair Chain: A: PDB Molecule:mutl; PDBTitle: crystal structure of an n-terminal 40kd fragment of e. coli2 dna mismatch repair protein mutl Phyre2 PDB 3kws chain B Region: 1 - 153 Aligned: 139 Modelled: 153 Confidence: 32.4% Identity: 13% PDB header:isomerase Chain: B: PDB Molecule:putative sugar isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_001305149.1) from2 parabacteroides distasonis atcc 8503 at 1.68 a resolution Phyre2 PDB 1o12 chain A domain 1 Region: 396 - 420 Aligned: 21 Modelled: 25 Confidence: 30.3% Identity: 43% Fold: Composite domain of metallo-dependent hydrolases Superfamily: Composite domain of metallo-dependent hydrolases Family: N-acetylglucosamine-6-phosphate deacetylase, NagA Phyre2 PDB 3onr chain I Region: 384 - 418 Aligned: 35 Modelled: 35 Confidence: 30.3% Identity: 0% PDB header:metal binding protein Chain: I: PDB Molecule:protein transport protein sece2; PDBTitle: crystal structure of the calcium chelating immunodominant antigen,2 calcium dodecin (rv0379),from mycobacterium tuberculosis with a novel3 calcium-binding site Phyre2 PDB 1vlv chain A domain 1 Region: 1 - 30 Aligned: 30 Modelled: 30 Confidence: 28.3% Identity: 23% Fold: ATC-like Superfamily: Aspartate/ornithine carbamoyltransferase Family: Aspartate/ornithine carbamoyltransferase Phyre2 PDB 1w7v chain D Region: 346 - 416 Aligned: 63 Modelled: 71 Confidence: 24.0% Identity: 16% PDB header:hydrolase Chain: D: PDB Molecule:xaa-pro aminopeptidase; PDBTitle: znmg substituted aminopeptidase p from e. coli Phyre2 PDB 2q02 chain A domain 1 Region: 11 - 39 Aligned: 29 Modelled: 29 Confidence: 18.7% Identity: 7% Fold: TIM beta/alpha-barrel Superfamily: Xylose isomerase-like Family: IolI-like Phyre2 PDB 3ff0 chain A Region: 378 - 420 Aligned: 43 Modelled: 43 Confidence: 15.9% Identity: 12% PDB header:biosynthetic protein Chain: A: PDB Molecule:phenazine biosynthesis protein phzb 2; PDBTitle: crystal structure of a phenazine biosynthesis-related protein (phzb2)2 from pseudomonas aeruginosa at 1.90 a resolution Phyre2 PDB 3oqt chain P Region: 384 - 415 Aligned: 32 Modelled: 32 Confidence: 14.9% Identity: 16% PDB header:flavoprotein Chain: P: PDB Molecule:rv1498a protein; PDBTitle: crystal structure of rv1498a protein from mycobacterium tuberculosis Phyre2 PDB 1m1h chain A domain 1 Region: 402 - 419 Aligned: 18 Modelled: 18 Confidence: 14.5% Identity: 28% Fold: N-utilization substance G protein NusG, insert domain Superfamily: N-utilization substance G protein NusG, insert domain Family: N-utilization substance G protein NusG, insert domain Phyre2 PDB 1bkn chain A domain 2 Region: 21 - 53 Aligned: 33 Modelled: 33 Confidence: 14.4% Identity: 6% Fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Family: DNA gyrase/MutL, N-terminal domain Phyre2 PDB 2iv0 chain A Region: 245 - 269 Aligned: 25 Modelled: 25 Confidence: 13.7% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase; PDBTitle: thermal stability of isocitrate dehydrogenase from2 archaeoglobus fulgidus studied by crystal structure3 analysis and engineering of chimers Phyre2 PDB 2bp1 chain C Region: 16 - 118 Aligned: 95 Modelled: 95 Confidence: 13.6% Identity: 14% PDB header:oxidoreductase Chain: C: PDB Molecule:aflatoxin b1 aldehyde reductase member 2; PDBTitle: structure of the aflatoxin aldehyde reductase in complex2 with nadph Phyre2 PDB 1ea6 chain A Region: 21 - 53 Aligned: 33 Modelled: 33 Confidence: 13.3% Identity: 9% PDB header:dna repair Chain: A: PDB Molecule:pms1 protein homolog 2; PDBTitle: n-terminal 40kda fragment of nhpms2 complexed with adp Phyre2 PDB 1ydu chain A domain 1 Region: 373 - 431 Aligned: 57 Modelled: 59 Confidence: 13.0% Identity: 18% Fold: At5g01610-like Superfamily: At5g01610-like Family: At5g01610-like Phyre2 PDB 2qw5 chain B Region: 5 - 38 Aligned: 34 Modelled: 34 Confidence: 12.4% Identity: 12% PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase-like tim barrel; PDBTitle: crystal structure of a putative sugar phosphate isomerase/epimerase2 (ava4194) from anabaena variabilis atcc 29413 at 1.78 a resolution Phyre2 PDB 1tuh chain A Region: 382 - 420 Aligned: 39 Modelled: 39 Confidence: 12.1% Identity: 8% Fold: Cystatin-like Superfamily: NTF2-like Family: Hypothetical protein egc068 from a soil-derived mobile gene cassette Phyre2 1 c3qtdC_ 2 d1vpba_ 3 d1vl4a_ 4 c1bknA_ 5 c3kwsB_ 6 d1o12a1 7 c3onrI_ 8 d1vlva1 9 c1w7vD_ 10 d2q02a1 11 c3ff0A_ 12 c3oqtP_ 13 d1m1ha1 14 d1bkna2 15 c2iv0A_ 16 c2bp1C_ 17 c1ea6A_ 18 d1ydua1 19 c2qw5B_ 20 d1tuha_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3qtdC_ 100.0 21 PDB header:gene regulation Chain: C: PDB Molecule:pmba protein; PDBTitle: crystal structure of putative modulator of gyrase (pmba) from2 pseudomonas aeruginosa pao1 2 d1vpba_ 100.0 21 Fold:Putative modulator of DNA gyrase, PmbA/TldD Superfamily:Putative modulator of DNA gyrase, PmbA/TldD Family:Putative modulator of DNA gyrase, PmbA/TldD 3 d1vl4a_ 100.0 20 Fold:Putative modulator of DNA gyrase, PmbA/TldD Superfamily:Putative modulator of DNA gyrase, PmbA/TldD Family:Putative modulator of DNA gyrase, PmbA/TldD 4 c1bknA_ 35.7 6 PDB header:dna repair Chain: A: PDB Molecule:mutl; PDBTitle: crystal structure of an n-terminal 40kd fragment of e. coli2 dna mismatch repair protein mutl 5 c3kwsB_ 32.4 13 PDB header:isomerase Chain: B: PDB Molecule:putative sugar isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_001305149.1) from2 parabacteroides distasonis atcc 8503 at 1.68 a resolution 6 d1o12a1 30.3 43 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:N-acetylglucosamine-6-phosphate deacetylase, NagA 7 c3onrI_ 30.3 0 PDB header:metal binding protein Chain: I: PDB Molecule:protein transport protein sece2; PDBTitle: crystal structure of the calcium chelating immunodominant antigen,2 calcium dodecin (rv0379),from mycobacterium tuberculosis with a novel3 calcium-binding site 8 d1vlva1 28.3 23 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 9 c1w7vD_ 24.0 16 PDB header:hydrolase Chain: D: PDB Molecule:xaa-pro aminopeptidase; PDBTitle: znmg substituted aminopeptidase p from e. coli 10 d2q02a1 18.7 7 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 11 c3ff0A_ 15.9 12 PDB header:biosynthetic protein Chain: A: PDB Molecule:phenazine biosynthesis protein phzb 2; PDBTitle: crystal structure of a phenazine biosynthesis-related protein (phzb2)2 from pseudomonas aeruginosa at 1.90 a resolution 12 c3oqtP_ 14.9 16 PDB header:flavoprotein Chain: P: PDB Molecule:rv1498a protein; PDBTitle: crystal structure of rv1498a protein from mycobacterium tuberculosis 13 d1m1ha1 14.5 28 Fold:N-utilization substance G protein NusG, insert domain Superfamily:N-utilization substance G protein NusG, insert domain Family:N-utilization substance G protein NusG, insert domain 14 d1bkna2 14.4 6 Fold:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Superfamily:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Family:DNA gyrase/MutL, N-terminal domain 15 c2iv0A_ 13.7 16 PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase; PDBTitle: thermal stability of isocitrate dehydrogenase from2 archaeoglobus fulgidus studied by crystal structure3 analysis and engineering of chimers 16 c2bp1C_ 13.6 14 PDB header:oxidoreductase Chain: C: PDB Molecule:aflatoxin b1 aldehyde reductase member 2; PDBTitle: structure of the aflatoxin aldehyde reductase in complex2 with nadph 17 c1ea6A_ 13.3 9 PDB header:dna repair Chain: A: PDB Molecule:pms1 protein homolog 2; PDBTitle: n-terminal 40kda fragment of nhpms2 complexed with adp 18 d1ydua1 13.0 18 Fold:At5g01610-like Superfamily:At5g01610-like Family:At5g01610-like 19 c2qw5B_ 12.4 12 PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase-like tim barrel; PDBTitle: crystal structure of a putative sugar phosphate isomerase/epimerase2 (ava4194) from anabaena variabilis atcc 29413 at 1.78 a resolution 20 d1tuha_ 12.1 8 Fold:Cystatin-like Superfamily:NTF2-like Family:Hypothetical protein egc068 from a soil-derived mobile gene cassette 21 c1tuhA_ not modelled 12.1 8 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein egc068; PDBTitle: structure of bal32a from a soil-derived mobile gene cassette 22 c1vlvA_ not modelled 11.3 23 PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of ornithine carbamoyltransferase (tm1097) from2 thermotoga maritima at 2.25 a resolution 23 d1c75a_ not modelled 10.8 23 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 24 d351ca_ not modelled 10.2 5 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 25 d1fi3a_ not modelled 10.2 5 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 26 d1dvva_ not modelled 9.8 5 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 27 c3gknA_ not modelled 9.7 12 PDB header:oxidoreductase Chain: A: PDB Molecule:bacterioferritin comigratory protein; PDBTitle: insights into the alkyl peroxide reduction activity of xanthomonas2 campestris bacterioferritin comigratory protein from the trapped3 intermediate/ligand complex structures 28 c3ezjA_ not modelled 8.9 12 PDB header:protein transport Chain: A: PDB Molecule:general secretion pathway protein gspd; PDBTitle: crystal structure of the n-terminal domain of the secretin gspd from2 etec determined with the assistance of a nanobody 29 d1cora_ not modelled 8.8 5 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 30 c3tr9A_ not modelled 8.5 10 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: structure of a dihydropteroate synthase (folp) in complex with pteroic2 acid from coxiella burnetii 31 c3updA_ not modelled 8.4 17 PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: 2.9 angstrom crystal structure of ornithine carbamoyltransferase2 (argf) from vibrio vulnificus 32 d7odca2 not modelled 8.3 10 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 33 c2on3A_ not modelled 8.2 13 PDB header:lyase Chain: A: PDB Molecule:ornithine decarboxylase; PDBTitle: a structural insight into the inhibition of human and2 leishmania donovani ornithine decarboxylases by 3-aminooxy-3 1-aminopropane 34 d1ynra1 not modelled 8.2 0 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 35 c3l23A_ not modelled 8.1 19 PDB header:isomerase Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of sugar phosphate isomerase/epimerase2 (yp_001303399.1) from parabacteroides distasonis atcc 8503 at 1.70 a3 resolution 36 c2xrfA_ not modelled 8.1 13 PDB header:transferase Chain: A: PDB Molecule:uridine phosphorylase 2; PDBTitle: crystal structure of human uridine phosphorylase 2 37 d1otha1 not modelled 8.0 18 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 38 c3f7xA_ not modelled 8.0 19 PDB header:unknown function Chain: A: PDB Molecule:putative polyketide cyclase; PDBTitle: crystal structure of a putative polyketide cyclase (pp0894) from2 pseudomonas putida kt2440 at 1.24 a resolution 39 d1h7sa2 not modelled 8.0 9 Fold:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Superfamily:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Family:DNA gyrase/MutL, N-terminal domain 40 d1b63a2 not modelled 7.9 6 Fold:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Superfamily:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Family:DNA gyrase/MutL, N-terminal domain 41 d1ix2a_ not modelled 7.8 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Copper resistance protein C (CopC, PcoC) 42 d2pjua1 not modelled 7.8 21 Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like 43 d2ds5a1 not modelled 7.8 20 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:ClpX chaperone zinc binding domain 44 c1ovxB_ not modelled 7.7 20 PDB header:metal binding protein Chain: B: PDB Molecule:atp-dependent clp protease atp-binding subunit clpx; PDBTitle: nmr structure of the e. coli clpx chaperone zinc binding domain dimer 45 c3cjlA_ not modelled 7.7 31 PDB header:unknown function Chain: A: PDB Molecule:domain of unknown function; PDBTitle: crystal structure of a protein of unknown function (eca1910) from2 pectobacterium atrosepticum scri1043 at 2.20 a resolution 46 c3ixrA_ not modelled 7.6 12 PDB header:oxidoreductase Chain: A: PDB Molecule:bacterioferritin comigratory protein; PDBTitle: crystal structure of xylella fastidiosa prxq c47s mutant 47 c3h4lB_ not modelled 7.2 12 PDB header:dna binding protein, protein binding Chain: B: PDB Molecule:dna mismatch repair protein pms1; PDBTitle: crystal structure of n terminal domain of a dna repair protein 48 d1dxha1 not modelled 7.2 17 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 49 d1w0da_ not modelled 7.0 14 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 50 d2a5yb1 not modelled 7.0 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CED-4 C-terminal domain-like 51 d2k54a1 not modelled 6.7 21 Fold:Cystatin-like Superfamily:NTF2-like Family:Atu0742-like 52 d1d7ka2 not modelled 6.7 10 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 53 d1pvva1 not modelled 6.7 18 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 54 c3na3A_ not modelled 6.6 3 PDB header:protein binding Chain: A: PDB Molecule:dna mismatch repair protein mlh1; PDBTitle: mutl protein homolog 1 isoform 1 from homo sapiens 55 c2kk4A_ not modelled 6.6 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein af_2094; PDBTitle: solution nmr structure of protein af2094 from archaeoglobus2 fulgidus. northeast structural genomics consotium (nesg)3 target gt2 56 c1htrP_ not modelled 6.5 19 PDB header:aspartyl protease Chain: P: PDB Molecule:progastricsin (pro segment); PDBTitle: crystal and molecular structures of human progastricsin at 1.622 angstroms resolution 57 d1s5aa_ not modelled 6.5 13 Fold:Cystatin-like Superfamily:NTF2-like Family:PhzA/PhzB-like 58 d1kfia4 not modelled 6.5 16 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 59 c3fuyC_ not modelled 6.4 19 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:putative integron gene cassette protein; PDBTitle: structure from the mobile metagenome of cole harbour salt2 marsh: integron cassette protein hfx_cass1 60 c3e8vA_ not modelled 6.4 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:possible transglutaminase-family protein; PDBTitle: crystal structure of a possible transglutaminase-family2 protein proteolytic fragment from bacteroides fragilis 61 d1ajza_ not modelled 6.3 12 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 62 c3k30B_ not modelled 6.3 21 PDB header:oxidoreductase Chain: B: PDB Molecule:histamine dehydrogenase; PDBTitle: histamine dehydrogenase from nocardiodes simplex 63 c2ds8A_ not modelled 6.3 20 PDB header:metal binding protein, protein binding Chain: A: PDB Molecule:atp-dependent clp protease atp-binding subunit PDBTitle: structure of the zbd-xb complex 64 d2c9qa1 not modelled 6.2 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Copper resistance protein C (CopC, PcoC) 65 d1ud9a1 not modelled 6.2 16 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 66 c3o6cA_ not modelled 6.2 4 PDB header:transferase Chain: A: PDB Molecule:pyridoxine 5'-phosphate synthase; PDBTitle: pyridoxal phosphate biosynthetic protein pdxj from campylobacter2 jejuni 67 c2l4dA_ not modelled 6.2 20 PDB header:electron transport Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c; PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida 68 d1dl6a_ not modelled 6.1 17 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 69 c2ideE_ not modelled 6.0 11 PDB header:biosynthetic protein Chain: E: PDB Molecule:molybdenum cofactor biosynthesis protein c; PDBTitle: crystal structure of the molybdenum cofactor biosynthesis protein c2 (ttha1789) from thermus theromophilus hb8 70 d1m5wa_ not modelled 6.0 17 Fold:TIM beta/alpha-barrel Superfamily:Pyridoxine 5'-phosphate synthase Family:Pyridoxine 5'-phosphate synthase 71 c3r8wC_ not modelled 5.9 9 PDB header:oxidoreductase Chain: C: PDB Molecule:3-isopropylmalate dehydrogenase 2, chloroplastic; PDBTitle: structure of 3-isopropylmalate dehydrogenase isoform 2 from2 arabidopsis thaliana at 2.2 angstrom resolution 72 d1pb1a_ not modelled 5.9 13 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 73 d1hqsa_ not modelled 5.9 17 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 74 d1ekxa1 not modelled 5.8 27 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 75 c2h90A_ not modelled 5.8 10 PDB header:oxidoreductase Chain: A: PDB Molecule:xenobiotic reductase a; PDBTitle: xenobiotic reductase a in complex with coumarin 76 c3jvvA_ not modelled 5.8 10 PDB header:atp binding protein Chain: A: PDB Molecule:twitching mobility protein; PDBTitle: crystal structure of p. aeruginosa pilt with bound amp-pcp 77 d1ad1a_ not modelled 5.7 12 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 78 c3blxM_ not modelled 5.7 14 PDB header:oxidoreductase Chain: M: PDB Molecule:isocitrate dehydrogenase [nad] subunit 1; PDBTitle: yeast isocitrate dehydrogenase (apo form) 79 c3mhsE_ not modelled 5.7 8 PDB header:hydrolase/transcription regulator/protei Chain: E: PDB Molecule:saga-associated factor 73; PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde 80 d1cm7a_ not modelled 5.7 17 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 81 c3g0kA_ not modelled 5.6 15 PDB header:ca-binding protein Chain: A: PDB Molecule:putative membrane protein; PDBTitle: crystal structure of a protein of unknown function with a cystatin-2 like fold (saro_2880) from novosphingobium aromaticivorans dsm at3 1.30 a resolution 82 d1xaca_ not modelled 5.6 16 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 83 d1sjwa_ not modelled 5.6 17 Fold:Cystatin-like Superfamily:NTF2-like Family:SnoaL-like polyketide cyclase 84 d1a05a_ not modelled 5.5 18 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 85 d1e42a2 not modelled 5.5 24 Fold:Subdomain of clathrin and coatomer appendage domain Superfamily:Subdomain of clathrin and coatomer appendage domain Family:Clathrin adaptor appendage, alpha and beta chain-specific domain 86 c3gk0H_ not modelled 5.4 17 PDB header:transferase Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic2 protein from burkholderia pseudomallei 87 d1hyua4 not modelled 5.3 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 88 c1yj7A_ not modelled 5.3 10 PDB header:protein transport Chain: A: PDB Molecule:escj; PDBTitle: crystal structure of enteropathogenic e.coli (epec) type iii secretion2 system protein escj 89 c3hz4A_ not modelled 5.3 9 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from methanosarcina mazei 90 d1luza_ not modelled 5.3 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 91 d1cnza_ not modelled 5.3 17 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 92 d1unld_ not modelled 5.2 12 Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin 93 c1unhD_ not modelled 5.2 12 PDB header:cell cycle Chain: D: PDB Molecule:cyclin-dependent kinase 5 activator 1; PDBTitle: structural mechanism for the inhibition of cdk5-p25 by2 roscovitine, aloisine and indirubin. 94 d1ddwa_ not modelled 5.2 13 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Enabled/VASP homology 1 domain (EVH1 domain) 95 d1iz5a1 not modelled 5.2 14 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 96 c3b4oB_ not modelled 5.2 13 PDB header:biosynthetic protein Chain: B: PDB Molecule:phenazine biosynthesis protein a/b; PDBTitle: crystal structure of phenazine biosynthesis protein phza/b2 from burkholderia cepacia r18194, apo form 97 d1wgka_ not modelled 5.1 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 98 d1g2ua_ not modelled 5.1 15 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 99 d1yhta1 not modelled 5.1 16 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-N-acetylhexosaminidase catalytic domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0