Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	N	I	E	I	R	Q	E	T	P	T	A	F	Y	I	K	V	H	D	T	D	N	V	A	I	I	V	N	D	N	G	L	K	A	G	T	R	F	P	D	G	L	E	L	I	E	H	I	P	Q	G	H	K	V	A	L	L	D	I
Secondary structure
SS confidence
Disorder		?	?	?				?	?	?		?	?	?	?																	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	A	N	G	E	I	I	R	Y	G	E	V	I	G	Y	A	V	R	A	I	P	R	G	S	W	I	D	E	S	M	V	V	L	P	E	A	P	P	L	H	T	L	P	L	A	T	K	V	P	E	P	L	P	P	L	E	G	Y	T	F
Secondary structure
SS confidence
Disorder																																						?	?	?	?		?	?	?	?	?	?		?	?	?	?			?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	G	Y	R	N	A	D	G	S	V	G	T	K	N	L	L	G	I	T	T	S	V	H	C	V	A	G	V	V	D	Y	V	V	K	I	I	E	R	D	L	L	P	K	Y	P	N	V	D	G	V	V	G	L	N	H	L	Y	G	C	G
Secondary structure
SS confidence
Disorder																																										?																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	A	I	N	A	P	A	A	V	V	P	I	R	T	I	H	N	I	S	L	N	P	N	F	G	G	E	V	M	V	I	G	L	G	C	E	K	L	Q	P	E	R	L	L	T	G	T	D	D	V	Q	A	I	P	V	E	S	A	S	I
Secondary structure
SS confidence
Disorder			?																																															?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	S	L	Q	D	E	K	H	V	G	F	Q	S	M	V	E	D	I	L	Q	I	A	E	R	H	L	Q	K	L	N	Q	R	Q	R	E	T	C	P	A	S	E	L	V	V	G	M	Q	C	G	G	S	D	A	F	S	G	V	T	A	N
Secondary structure
SS confidence
Disorder							?	?	?																								?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		P	A	V	G	Y	A	S	D	L	L	V	R	C	G	A	T	V	M	F	S	E	V	T	E	V	R	D	A	I	H	L	L	T	P	R	A	V	N	E	E	V	G	K	R	L	L	E	E	M	E	W	Y	D	N	Y	L	N	M	G	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		T	D	R	S	A	N	P	S	P	G	N	K	K	G	G	L	A	N	V	V	E	K	A	L	G	S	I	A	K	S	G	K	S	A	I	V	E	V	L	S	P	G	Q	R	P	T	K	R	G	L	I	Y	A	A	T	P	A	S	D	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		V	C	G	T	Q	Q	V	A	S	G	I	T	V	Q	V	F	T	T	G	R	G	T	P	Y	G	L	M	A	V	P	V	I	K	M	A	T	R	T	E	L	A	N	R	W	F	D	L	M	D	I	N	A	G	T	I	A	T	G	E	E
Secondary structure
SS confidence
Disorder																																																										?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
Sequence		T	I	E	E	V	G	W	K	L	F	H	F	I	L	D	V	A	S	G	K	K	K	T	F	S	D	Q	W	G	L	H	N	Q	L	A	V	F	N	P	A	P	V	T
Secondary structure
SS confidence
Disorder																				?			?		?	?	?	?	?	?	?	?							?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3laz chain B Region: 2 - 93 Aligned: 92 Modelled: 92 Confidence: 100.0% Identity: 98% PDB header:lyase Chain: B: PDB Molecule:d-galactarate dehydratase; PDBTitle: the crystal structure of the n-terminal domain of d-2 galactarate dehydratase from escherichia coli cft073 Phyre2 PDB 3k3s chain G Region: 14 - 96 Aligned: 80 Modelled: 83 Confidence: 99.9% Identity: 36% PDB header:hydrolase Chain: G: PDB Molecule:altronate hydrolase; PDBTitle: crystal structure of altronate hydrolase (fragment 1-84) from shigella2 flexneri. Phyre2 PDB 1qd1 chain A Region: 63 - 182 Aligned: 103 Modelled: 119 Confidence: 72.7% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:formiminotransferase-cyclodeaminase; PDBTitle: the crystal structure of the formiminotransferase domain of2 formiminotransferase-cyclodeaminase. Phyre2 PDB 3deg chain C Region: 370 - 495 Aligned: 126 Modelled: 126 Confidence: 59.7% Identity: 19% PDB header:ribosome Chain: C: PDB Molecule:gtp-binding protein lepa; PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp Phyre2 PDB 2nu7 chain B domain 1 Region: 182 - 264 Aligned: 75 Modelled: 83 Confidence: 54.9% Identity: 9% Fold: Flavodoxin-like Superfamily: Succinyl-CoA synthetase domains Family: Succinyl-CoA synthetase domains Phyre2 PDB 1tt9 chain B Region: 65 - 182 Aligned: 100 Modelled: 110 Confidence: 53.2% Identity: 17% PDB header:transferase, lyase Chain: B: PDB Molecule:formimidoyltransferase-cyclodeaminase PDBTitle: structure of the bifunctional and golgi associated2 formiminotransferase cyclodeaminase octamer Phyre2 PDB 3cwc chain B Region: 327 - 497 Aligned: 156 Modelled: 168 Confidence: 52.7% Identity: 14% PDB header:transferase Chain: B: PDB Molecule:putative glycerate kinase 2; PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2 Phyre2 PDB 2zdr chain A domain 1 Region: 42 - 92 Aligned: 51 Modelled: 51 Confidence: 51.0% Identity: 18% Fold: beta-clip Superfamily: AFP III-like domain Family: AFP III-like domain Phyre2 PDB 3g8r chain A Region: 42 - 92 Aligned: 51 Modelled: 51 Confidence: 48.7% Identity: 12% PDB header:biosynthetic protein Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e; PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472 Phyre2 PDB 3b8h chain A Region: 370 - 441 Aligned: 72 Modelled: 72 Confidence: 41.9% Identity: 13% PDB header:biosynthetic protein/transferase Chain: A: PDB Molecule:elongation factor 2; PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex Phyre2 PDB 2f69 chain A domain 2 Region: 55 - 71 Aligned: 17 Modelled: 17 Confidence: 41.2% Identity: 29% Fold: beta-clip Superfamily: SET domain Family: Histone lysine methyltransferases Phyre2 PDB 3tr5 chain C Region: 370 - 441 Aligned: 72 Modelled: 72 Confidence: 40.0% Identity: 17% PDB header:translation Chain: C: PDB Molecule:peptide chain release factor 3; PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii Phyre2 PDB 1csh chain A Region: 290 - 369 Aligned: 74 Modelled: 80 Confidence: 38.3% Identity: 14% Fold: Citrate synthase Superfamily: Citrate synthase Family: Citrate synthase Phyre2 PDB 3izq chain 1 Region: 377 - 437 Aligned: 53 Modelled: 61 Confidence: 37.9% Identity: 15% PDB header:ribosomal protein,hydrolase Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome Phyre2 PDB 3frn chain A Region: 14 - 90 Aligned: 75 Modelled: 76 Confidence: 34.8% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:flagellar protein flga; PDBTitle: crystal structure of flagellar protein flga from thermotoga maritima2 msb8 Phyre2 PDB 2elf chain A Region: 370 - 437 Aligned: 62 Modelled: 68 Confidence: 32.2% Identity: 13% PDB header:translation Chain: A: PDB Molecule:protein translation elongation factor 1a; PDBTitle: crystal structure of the selb-like elongation factor ef-pyl2 from methanosarcina mazei Phyre2 PDB 3cnl chain A Region: 407 - 431 Aligned: 25 Modelled: 25 Confidence: 31.8% Identity: 16% PDB header:signaling protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of gnp-bound ylqf from t. maritima Phyre2 PDB 3m7o chain B Region: 14 - 90 Aligned: 76 Modelled: 77 Confidence: 30.8% Identity: 11% PDB header:immune system Chain: B: PDB Molecule:lymphocyte antigen 86; PDBTitle: crystal structure of mouse md-1 in complex with phosphatidylcholine Phyre2 PDB 2ywf chain A Region: 370 - 437 Aligned: 68 Modelled: 68 Confidence: 30.0% Identity: 12% PDB header:translation Chain: A: PDB Molecule:gtp-binding protein lepa; PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus Phyre2 PDB 1puj chain A Region: 407 - 431 Aligned: 25 Modelled: 25 Confidence: 28.0% Identity: 24% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: G proteins Phyre2 1 c3lazB_ 2 c3k3sG_ 3 c1qd1A_ 4 c3degC_ 5 d2nu7b1 6 c1tt9B_ 7 c3cwcB_ 8 d2zdra1 9 c3g8rA_ 10 c3b8hA_ 11 d2f69a2 12 c3tr5C_ 13 d1csha_ 14 c3izq1_ 15 c3frnA_ 16 c2elfA_ 17 c3cnlA_ 18 c3m7oB_ 19 c2ywfA_ 20 d1puja_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3lazB_ 100.0 98 PDB header:lyase Chain: B: PDB Molecule:d-galactarate dehydratase; PDBTitle: the crystal structure of the n-terminal domain of d-2 galactarate dehydratase from escherichia coli cft073 2 c3k3sG_ 99.9 36 PDB header:hydrolase Chain: G: PDB Molecule:altronate hydrolase; PDBTitle: crystal structure of altronate hydrolase (fragment 1-84) from shigella2 flexneri. 3 c1qd1A_ 72.7 14 PDB header:transferase Chain: A: PDB Molecule:formiminotransferase-cyclodeaminase; PDBTitle: the crystal structure of the formiminotransferase domain of2 formiminotransferase-cyclodeaminase. 4 c3degC_ 59.7 19 PDB header:ribosome Chain: C: PDB Molecule:gtp-binding protein lepa; PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp 5 d2nu7b1 54.9 9 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 6 c1tt9B_ 53.2 17 PDB header:transferase, lyase Chain: B: PDB Molecule:formimidoyltransferase-cyclodeaminase PDBTitle: structure of the bifunctional and golgi associated2 formiminotransferase cyclodeaminase octamer 7 c3cwcB_ 52.7 14 PDB header:transferase Chain: B: PDB Molecule:putative glycerate kinase 2; PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2 8 d2zdra1 51.0 18 Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain 9 c3g8rA_ 48.7 12 PDB header:biosynthetic protein Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e; PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472 10 c3b8hA_ 41.9 13 PDB header:biosynthetic protein/transferase Chain: A: PDB Molecule:elongation factor 2; PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex 11 d2f69a2 41.2 29 Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases 12 c3tr5C_ 40.0 17 PDB header:translation Chain: C: PDB Molecule:peptide chain release factor 3; PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii 13 d1csha_ 38.3 14 Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase 14 c3izq1_ 37.9 15 PDB header:ribosomal protein,hydrolase Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome 15 c3frnA_ 34.8 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:flagellar protein flga; PDBTitle: crystal structure of flagellar protein flga from thermotoga maritima2 msb8 16 c2elfA_ 32.2 13 PDB header:translation Chain: A: PDB Molecule:protein translation elongation factor 1a; PDBTitle: crystal structure of the selb-like elongation factor ef-pyl2 from methanosarcina mazei 17 c3cnlA_ 31.8 16 PDB header:signaling protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of gnp-bound ylqf from t. maritima 18 c3m7oB_ 30.8 11 PDB header:immune system Chain: B: PDB Molecule:lymphocyte antigen 86; PDBTitle: crystal structure of mouse md-1 in complex with phosphatidylcholine 19 c2ywfA_ 30.0 12 PDB header:translation Chain: A: PDB Molecule:gtp-binding protein lepa; PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus 20 d1puja_ 28.0 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 21 d1c8ba_ not modelled 28.0 23 Fold:Phosphorylase/hydrolase-like Superfamily:HybD-like Family:Germination protease 22 c1g7tA_ not modelled 27.3 18 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if2/eif5b; PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp 23 d1vlia1 not modelled 27.1 17 Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain 24 c3bicA_ not modelled 25.8 18 PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase, mitochondrial precursor; PDBTitle: crystal structure of human methylmalonyl-coa mutase 25 c2j69D_ not modelled 25.3 11 PDB header:hydrolase Chain: D: PDB Molecule:bacterial dynamin-like protein; PDBTitle: bacterial dynamin-like protein bdlp 26 c1vliA_ not modelled 24.4 26 PDB header:biosynthetic protein Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse; PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution 27 c1xqhE_ not modelled 23.7 23 PDB header:transferase Chain: E: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-4 PDBTitle: crystal structure of a ternary complex of the2 methyltransferase set9 (also known as set7/9) with a p533 peptide and sah 28 c3ka5A_ not modelled 23.5 40 PDB header:chaperone Chain: A: PDB Molecule:ribosome-associated protein y (psrp-1); PDBTitle: crystal structure of ribosome-associated protein y (psrp-1)2 from clostridium acetobutylicum. northeast structural3 genomics consortium target id car123a 29 c3h6lA_ not modelled 23.1 15 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd2; PDBTitle: methyltransferase domain of human set domain-containing protein 2 30 c3k2tA_ not modelled 22.7 40 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo2511 protein; PDBTitle: crystal structure of lmo2511 protein from listeria2 monocytogenes, northeast structural genomics consortium3 target lkr84a 31 c3f9xA_ not modelled 22.4 38 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd8; PDBTitle: structural insights into lysine multiple methylation by set2 domain methyltransferases, set8-y334f / h4-lys20me2 /3 adohcy 32 c1xuzA_ not modelled 22.3 18 PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol 33 c1zo1I_ not modelled 21.5 15 PDB header:translation/rna Chain: I: PDB Molecule:translation initiation factor 2; PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex 34 c2bm0A_ not modelled 21.4 18 PDB header:elongation factor Chain: A: PDB Molecule:elongation factor g; PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a 35 c3m5uA_ not modelled 21.3 13 PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni 36 c3opeA_ not modelled 21.2 46 PDB header:transferase Chain: A: PDB Molecule:probable histone-lysine n-methyltransferase ash1l; PDBTitle: structural basis of auto-inhibitory mechanism of histone2 methyltransferase 37 c1x5bA_ not modelled 21.0 11 PDB header:protein binding Chain: A: PDB Molecule:signal transducing adaptor molecule 2; PDBTitle: the solution structure of the vhs domain of human signal2 transducing adaptor molecule 2 38 c2z64C_ not modelled 21.0 14 PDB header:immune system Chain: C: PDB Molecule:lymphocyte antigen 96; PDBTitle: crystal structure of mouse tlr4 and mouse md-2 complex 39 d1h3ia2 not modelled 20.9 20 Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases 40 c3bo5A_ not modelled 20.7 31 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setmar; PDBTitle: crystal structure of methyltransferase domain of human histone-lysine2 n-methyltransferase setmar 41 c3ooiA_ not modelled 20.3 46 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-36 and h4 PDBTitle: crystal structure of human histone-lysine n-methyltransferase nsd1 set2 domain in complex with s-adenosyl-l-methionine 42 d1umqa_ not modelled 19.4 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 43 c1umqA_ not modelled 19.4 10 PDB header:dna-binding protein Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein; PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity 44 d1ml9a_ not modelled 19.3 38 Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases 45 d1elka_ not modelled 18.8 12 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 46 c2xexA_ not modelled 18.5 17 PDB header:translation Chain: A: PDB Molecule:elongation factor g; PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g 47 d1mvha_ not modelled 17.6 31 Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases 48 c1mvhA_ not modelled 17.6 31 PDB header:transferase Chain: A: PDB Molecule:cryptic loci regulator 4; PDBTitle: structure of the set domain histone lysine2 methyltransferase clr4 49 d1dvpa1 not modelled 17.2 13 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 50 d1nuia2 not modelled 16.8 56 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger 51 c2r3aA_ not modelled 16.2 23 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase suv39h2; PDBTitle: methyltransferase domain of human suppressor of variegation2 3-9 homolog 2 52 c1s0uA_ not modelled 16.0 15 PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit; PDBTitle: eif2gamma apo 53 d1eucb1 not modelled 15.8 9 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 54 d2ctsa_ not modelled 15.8 15 Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase 55 c2k4zA_ not modelled 14.7 3 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dsrr; PDBTitle: solution nmr structure of allochromatium vinosum dsrr:2 northeast structural genomics consortium target op5 56 c3cb4D_ not modelled 14.3 19 PDB header:translation Chain: D: PDB Molecule:gtp-binding protein lepa; PDBTitle: the crystal structure of lepa 57 d1csca_ not modelled 13.7 15 Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase 58 d1txna_ not modelled 13.7 14 Fold:Coproporphyrinogen III oxidase Superfamily:Coproporphyrinogen III oxidase Family:Coproporphyrinogen III oxidase 59 c3s8pA_ not modelled 13.6 46 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase suv420h1; PDBTitle: crystal structure of the set domain of human histone-lysine n-2 methyltransferase suv420h1 in complex with s-adenosyl-l-methionine 60 d1ucva_ not modelled 12.7 23 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 61 c3by5A_ not modelled 12.7 30 PDB header:biosynthetic protein Chain: A: PDB Molecule:cobalamin biosynthesis protein; PDBTitle: crystal structure of cobalamin biosynthesis protein chig from2 agrobacterium tumefaciens str. c58 62 d3by5a1 not modelled 12.7 30 Fold:CobE/GbiG C-terminal domain-like Superfamily:CobE/GbiG C-terminal domain-like Family:CobE/GbiG C-terminal domain-like 63 c2qptA_ not modelled 12.3 16 PDB header:endocytosis Chain: A: PDB Molecule:eh domain-containing protein-2; PDBTitle: crystal structure of an ehd atpase involved in membrane remodelling 64 c3mu3A_ not modelled 12.2 11 PDB header:immune system Chain: A: PDB Molecule:protein md-1; PDBTitle: crystal structure of chicken md-1 complexed with lipid iva 65 d1ynya1 not modelled 12.0 22 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase) 66 d1wjta_ not modelled 11.7 13 Fold:N-cbl like Superfamily:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Family:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 67 d2olra1 not modelled 11.7 15 Fold:PEP carboxykinase-like Superfamily:PEP carboxykinase-like Family:PEP carboxykinase C-terminal domain 68 c3simA_ not modelled 11.7 11 PDB header:hydrolase Chain: A: PDB Molecule:protein, family 18 chitinase; PDBTitle: crystallographic structure analysis of family 18 chitinase from crocus2 vernus 69 c3nioF_ not modelled 11.4 23 PDB header:hydrolase Chain: F: PDB Molecule:guanidinobutyrase; PDBTitle: crystal structure of pseudomonas aeruginosa guanidinobutyrase 70 d1fx0a1 not modelled 11.4 18 Fold:Left-handed superhelix Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase 71 c2rdo7_ not modelled 11.3 15 PDB header:ribosome Chain: 7: PDB Molecule:elongation factor g; PDBTitle: 50s subunit with ef-g(gdpnp) and rrf bound 72 c1e1cA_ not modelled 11.2 15 PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase alpha chain; PDBTitle: methylmalonyl-coa mutase h244a mutant 73 d1to6a_ not modelled 11.1 15 Fold:Glycerate kinase I Superfamily:Glycerate kinase I Family:Glycerate kinase I 74 c1skqB_ not modelled 10.8 18 PDB header:translation Chain: B: PDB Molecule:elongation factor 1-alpha; PDBTitle: the crystal structure of sulfolobus solfataricus elongation2 factor 1-alpha in complex with magnesium and gdp 75 d1fuea_ not modelled 10.8 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 76 d1v8qa_ not modelled 10.7 37 Fold:Barrel-sandwich hybrid Superfamily:Ribosomal L27 protein-like Family:Ribosomal L27 protein 77 c3fin0_ not modelled 10.7 37 PDB header:ribosome Chain: 0: PDB Molecule:50s ribosomal protein l27; PDBTitle: t. thermophilus 70s ribosome in complex with mrna, trnas2 and ef-tu.gdp.kirromycin ternary complex, fitted to a 6.43 a cryo-em map. this file contains the 50s subunit. 78 c2hdnJ_ not modelled 10.7 14 PDB header:translation Chain: J: PDB Molecule:elongation factor ef-tu; PDBTitle: trypsin-modified elongation factor tu in complex with2 tetracycline at 2.8 angstrom resolution 79 d1hr0w_ not modelled 10.3 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 80 d1yv9a1 not modelled 10.3 15 Fold:HAD-like Superfamily:HAD-like Family:NagD-like 81 d1o0ya_ not modelled 10.0 16 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 82 d2f23a2 not modelled 10.0 14 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 83 c3b8iF_ not modelled 9.9 18 PDB header:lyase Chain: F: PDB Molecule:pa4872 oxaloacetate decarboxylase; PDBTitle: crystal structure of oxaloacetate decarboxylase from pseudomonas2 aeruginosa (pa4872) in complex with oxalate and mg2+. 84 d2py8a1 not modelled 9.9 10 Fold:RbcX-like Superfamily:RbcX-like Family:RbcX-like 85 c2qpwA_ not modelled 9.7 20 PDB header:transcription Chain: A: PDB Molecule:pr domain zinc finger protein 2; PDBTitle: methyltransferase domain of human pr domain-containing2 protein 2 86 d2h2ja2 not modelled 9.6 5 Fold:beta-clip Superfamily:SET domain Family:RuBisCo LSMT catalytic domain 87 c2gedB_ not modelled 9.4 18 PDB header:protein transport, signaling protein Chain: B: PDB Molecule:signal recognition particle receptor beta PDBTitle: signal recognition particle receptor beta-subunit in2 nucleotide-free dimerized form 88 c2f5jA_ not modelled 9.4 26 PDB header:gene regulation Chain: A: PDB Molecule:mortality factor 4-like protein 1; PDBTitle: crystal structure of mrg domain from human mrg15 89 c3nipB_ not modelled 9.3 19 PDB header:hydrolase Chain: B: PDB Molecule:3-guanidinopropionase; PDBTitle: crystal structure of pseudomonas aeruginosa guanidinopropionase2 complexed with 1,6-diaminohexane 90 c3mmpC_ not modelled 9.2 15 PDB header:transferase Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts; PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins 91 d1vf5c1 not modelled 9.1 36 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 92 c2w5zA_ not modelled 8.8 27 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase hrx; PDBTitle: ternary complex of the mixed lineage leukaemia (mll1) set2 domain with the cofactor product s-adenosylhomocysteine3 and histone peptide. 93 d1z9ha1 not modelled 8.6 10 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 94 c3eoeC_ not modelled 8.5 12 PDB header:transferase Chain: C: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pyruvate kinase from toxoplasma gondii, 55.m00007 95 c3izyP_ not modelled 8.5 12 PDB header:rna, ribosomal protein Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial; PDBTitle: mammalian mitochondrial translation initiation factor 2 96 d1gq6a_ not modelled 8.4 28 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 97 d1pkla3 not modelled 8.1 12 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 98 d1xm3a_ not modelled 8.1 15 Fold:TIM beta/alpha-barrel Superfamily:ThiG-like Family:ThiG-like 99 d1wx0a1 not modelled 8.0 60 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0