Phyre 2 alignment of P39829 with c3k3sG_

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Job Description | P39829
Confidence | 99.95% | Date | Thu Jan 5 12:00:53 GMT 2012
Rank | 2 | Aligned Residues | 80
% Identity | 36% | Template | c3k3sG_
PDB info | PDB header:hydrolase | Chain: G: PDB Molecule:altronate hydrolase; | PDBTitle: crystal structure of altronate hydrolase (fragment 1-84) from shigella2 flexneri.
Resolution | 2.15 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 14 | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 |  |  |  | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | F | Y | I | K | V | H | D | T | D | N | V | A | I | I | V | N | D | N | G | L | K | A | G | T | R | F | P | . | . | . | D | G | L | E | L | I | E | H | I | P | Q | G | H | K | V | A | L | L | D | I | P | A | N | G | E | I | I | R | Y | G | E | V | I | G | Y | A | V | R | A | I | P | R | G | S | W | I | D | E | S | M
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Q | Y | I | K | I | H | A | L | D | N | V | A | V | A | L | A | D | . | . | L | A | E | G | T | E | V | S | V | D | N | Q | T | V | T | L | R | Q | D | V | A | R | G | H | K | F | A | L | T | D | I | A | K | G | A | N | V | I | K | Y | G | L | P | I | G | Y | A | L | A | D | I | A | A | G | E | H | V | H | A | H | N
Template Known Secondary structure |  | S |  |  |  |  | S | T | T |  | S |  |  |  |  | S | S |  | . | . | B |  | T | T |  |  |  |  |  | T | T |  |  |  |  |  | S | S |  | B |  | T | T |  |  |  |  | S | S |  | B |  | T | T |  |  |  |  |  | T | T |  |  |  |  |  |  | S | S |  | B |  | T | T |  |  |  | S | T | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . |  |  | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | .
|  | 91 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |
Query Sequence |  | V | V | L | P | E | A
Query Conservation |  |  |  |  |  |  |
Alig confidence |  |  |  | . |  |  |
Template Conservation |  |  |  | . |  |  |
Template Sequence |  | T | R | . | T | N | L
Template Known Secondary structure |  |  |  | . |  |  |
Template Predicted Secondary structure |  |  |  | . |  |  |
Template SS confidence |  |  |  |  |  |  |
|  | 80 | . |  | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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