Phyre 2 Results for P39829

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Email | l.a.kelley@imperial.ac.uk
Description | P39829
Date | Thu Jan 5 12:00:53 GMT 2012
Unique Job ID | 5823a77f3a0672ae

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3lazB_
Top template information
PDB header:lyase Chain: B: PDB Molecule:d-galactarate dehydratase; PDBTitle: the crystal structure of the n-terminal domain of d-2 galactarate dehydratase from escherichia coli cft073
Confidence and coverage
Confidence: | 100.0% | Coverage: | 18%
92 residues ( 18% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | A | N | I | E | I | R | Q | E | T | P | T | A | F | Y | I | K | V | H | D | T | D | N | V | A | I | I | V | N | D | N | G | L | K | A | G | T | R | F | P | D | G | L | E | L | I | E | H | I | P | Q | G | H | K | V | A | L | L | D | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  | ? | ? | ? |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | P | A | N | G | E | I | I | R | Y | G | E | V | I | G | Y | A | V | R | A | I | P | R | G | S | W | I | D | E | S | M | V | V | L | P | E | A | P | P | L | H | T | L | P | L | A | T | K | V | P | E | P | L | P | P | L | E | G | Y | T | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  | ? | ? | ? | ? | ? | ? |  | ? | ? | ? | ? |  |  | ? |  | ? |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | E | G | Y | R | N | A | D | G | S | V | G | T | K | N | L | L | G | I | T | T | S | V | H | C | V | A | G | V | V | D | Y | V | V | K | I | I | E | R | D | L | L | P | K | Y | P | N | V | D | G | V | V | G | L | N | H | L | Y | G | C | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | V | A | I | N | A | P | A | A | V | V | P | I | R | T | I | H | N | I | S | L | N | P | N | F | G | G | E | V | M | V | I | G | L | G | C | E | K | L | Q | P | E | R | L | L | T | G | T | D | D | V | Q | A | I | P | V | E | S | A | S | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | V | S | L | Q | D | E | K | H | V | G | F | Q | S | M | V | E | D | I | L | Q | I | A | E | R | H | L | Q | K | L | N | Q | R | Q | R | E | T | C | P | A | S | E | L | V | V | G | M | Q | C | G | G | S | D | A | F | S | G | V | T | A | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | P | A | V | G | Y | A | S | D | L | L | V | R | C | G | A | T | V | M | F | S | E | V | T | E | V | R | D | A | I | H | L | L | T | P | R | A | V | N | E | E | V | G | K | R | L | L | E | E | M | E | W | Y | D | N | Y | L | N | M | G | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | T | D | R | S | A | N | P | S | P | G | N | K | K | G | G | L | A | N | V | V | E | K | A | L | G | S | I | A | K | S | G | K | S | A | I | V | E | V | L | S | P | G | Q | R | P | T | K | R | G | L | I | Y | A | A | T | P | A | S | D | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | V | C | G | T | Q | Q | V | A | S | G | I | T | V | Q | V | F | T | T | G | R | G | T | P | Y | G | L | M | A | V | P | V | I | K | M | A | T | R | T | E | L | A | N | R | W | F | D | L | M | D | I | N | A | G | T | I | A | T | G | E | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | .
Sequence |  | T | I | E | E | V | G | W | K | L | F | H | F | I | L | D | V | A | S | G | K | K | K | T | F | S | D | Q | W | G | L | H | N | Q | L | A | V | F | N | P | A | P | V | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  | ? |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3lazB_ |

### PDB 3laz chain B

Region: 2 - 93
Aligned: 92
Modelled: 92
Confidence: 100.0%
Identity: 98%
PDB header:lyase
Chain: B: PDB Molecule:d-galactarate dehydratase;
PDBTitle: the crystal structure of the n-terminal domain of d-2 galactarate dehydratase from escherichia coli cft073

Phyre2
2 |
| c3k3sG_ |

### PDB 3k3s chain G

Region: 14 - 96
Aligned: 80
Modelled: 83
Confidence: 99.9%
Identity: 36%
PDB header:hydrolase
Chain: G: PDB Molecule:altronate hydrolase;
PDBTitle: crystal structure of altronate hydrolase (fragment 1-84) from shigella2 flexneri.

Phyre2
3 |
| c1qd1A_ |

### PDB 1qd1 chain A

Region: 63 - 182
Aligned: 103
Modelled: 119
Confidence: 72.7%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:formiminotransferase-cyclodeaminase;
PDBTitle: the crystal structure of the formiminotransferase domain of2 formiminotransferase-cyclodeaminase.

Phyre2
4 |
| c3degC_ |

### PDB 3deg chain C

Region: 370 - 495
Aligned: 126
Modelled: 126
Confidence: 59.7%
Identity: 19%
PDB header:ribosome
Chain: C: PDB Molecule:gtp-binding protein lepa;
PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp

Phyre2
5 |
| d2nu7b1 |

### PDB 2nu7 chain B domain 1

Region: 182 - 264
Aligned: 75
Modelled: 83
Confidence: 54.9%
Identity: 9%
Fold: Flavodoxin-like
Superfamily: Succinyl-CoA synthetase domains
Family: Succinyl-CoA synthetase domains

Phyre2
6 |
| c1tt9B_ |

### PDB 1tt9 chain B

Region: 65 - 182
Aligned: 100
Modelled: 110
Confidence: 53.2%
Identity: 17%
PDB header:transferase, lyase
Chain: B: PDB Molecule:formimidoyltransferase-cyclodeaminase
PDBTitle: structure of the bifunctional and golgi associated2 formiminotransferase cyclodeaminase octamer

Phyre2
7 |
| c3cwcB_ |

### PDB 3cwc chain B

Region: 327 - 497
Aligned: 156
Modelled: 168
Confidence: 52.7%
Identity: 14%
PDB header:transferase
Chain: B: PDB Molecule:putative glycerate kinase 2;
PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2

Phyre2
8 |
| d2zdra1 |

### PDB 2zdr chain A domain 1

Region: 42 - 92
Aligned: 51
Modelled: 51
Confidence: 51.0%
Identity: 18%
Fold: beta-clip
Superfamily: AFP III-like domain
Family: AFP III-like domain

Phyre2
9 |
| c3g8rA_ |

### PDB 3g8r chain A

Region: 42 - 92
Aligned: 51
Modelled: 51
Confidence: 48.7%
Identity: 12%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e;
PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472

Phyre2
10 |
| c3b8hA_ |

### PDB 3b8h chain A

Region: 370 - 441
Aligned: 72
Modelled: 72
Confidence: 41.9%
Identity: 13%
PDB header:biosynthetic protein/transferase
Chain: A: PDB Molecule:elongation factor 2;
PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex

Phyre2
11 |
| d2f69a2 |

### PDB 2f69 chain A domain 2

Region: 55 - 71
Aligned: 17
Modelled: 17
Confidence: 41.2%
Identity: 29%
Fold: beta-clip
Superfamily: SET domain
Family: Histone lysine methyltransferases

Phyre2
12 |
| c3tr5C_ |

### PDB 3tr5 chain C

Region: 370 - 441
Aligned: 72
Modelled: 72
Confidence: 40.0%
Identity: 17%
PDB header:translation
Chain: C: PDB Molecule:peptide chain release factor 3;
PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii

Phyre2
13 |
| d1csha_ |

### PDB 1csh chain A

Region: 290 - 369
Aligned: 74
Modelled: 80
Confidence: 38.3%
Identity: 14%
Fold: Citrate synthase
Superfamily: Citrate synthase
Family: Citrate synthase

Phyre2
14 |
| c3izq1_ |

### PDB 3izq chain 1

Region: 377 - 437
Aligned: 53
Modelled: 61
Confidence: 37.9%
Identity: 15%
PDB header:ribosomal protein,hydrolase
Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome

Phyre2
15 |
| c3frnA_ |

### PDB 3frn chain A

Region: 14 - 90
Aligned: 75
Modelled: 76
Confidence: 34.8%
Identity: 13%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:flagellar protein flga;
PDBTitle: crystal structure of flagellar protein flga from thermotoga maritima2 msb8

Phyre2
16 |
| c2elfA_ |

### PDB 2elf chain A

Region: 370 - 437
Aligned: 62
Modelled: 68
Confidence: 32.2%
Identity: 13%
PDB header:translation
Chain: A: PDB Molecule:protein translation elongation factor 1a;
PDBTitle: crystal structure of the selb-like elongation factor ef-pyl2 from methanosarcina mazei

Phyre2
17 |
| c3cnlA_ |

### PDB 3cnl chain A

Region: 407 - 431
Aligned: 25
Modelled: 25
Confidence: 31.8%
Identity: 16%
PDB header:signaling protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of gnp-bound ylqf from t. maritima

Phyre2
18 |
| c3m7oB_ |

### PDB 3m7o chain B

Region: 14 - 90
Aligned: 76
Modelled: 77
Confidence: 30.8%
Identity: 11%
PDB header:immune system
Chain: B: PDB Molecule:lymphocyte antigen 86;
PDBTitle: crystal structure of mouse md-1 in complex with phosphatidylcholine

Phyre2
19 |
| c2ywfA_ |

### PDB 2ywf chain A

Region: 370 - 437
Aligned: 68
Modelled: 68
Confidence: 30.0%
Identity: 12%
PDB header:translation
Chain: A: PDB Molecule:gtp-binding protein lepa;
PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus

Phyre2
20 |
| d1puja_ |

### PDB 1puj chain A

Region: 407 - 431
Aligned: 25
Modelled: 25
Confidence: 28.0%
Identity: 24%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: G proteins

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3lazB_ |
|  | 100.0 | 98 | PDB header:lyase Chain: B: PDB Molecule:d-galactarate dehydratase; PDBTitle: the crystal structure of the n-terminal domain of d-2 galactarate dehydratase from escherichia coli cft073
2 | c3k3sG_ |
|  | 99.9 | 36 | PDB header:hydrolase Chain: G: PDB Molecule:altronate hydrolase; PDBTitle: crystal structure of altronate hydrolase (fragment 1-84) from shigella2 flexneri.
3 | c1qd1A_ |
|  | 72.7 | 14 | PDB header:transferase Chain: A: PDB Molecule:formiminotransferase-cyclodeaminase; PDBTitle: the crystal structure of the formiminotransferase domain of2 formiminotransferase-cyclodeaminase.
4 | c3degC_ |
|  | 59.7 | 19 | PDB header:ribosome Chain: C: PDB Molecule:gtp-binding protein lepa; PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp
5 | d2nu7b1 |
|  | 54.9 | 9 | Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains
6 | c1tt9B_ |
|  | 53.2 | 17 | PDB header:transferase, lyase Chain: B: PDB Molecule:formimidoyltransferase-cyclodeaminase PDBTitle: structure of the bifunctional and golgi associated2 formiminotransferase cyclodeaminase octamer
7 | c3cwcB_ |
|  | 52.7 | 14 | PDB header:transferase Chain: B: PDB Molecule:putative glycerate kinase 2; PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2
8 | d2zdra1 |
|  | 51.0 | 18 | Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain
9 | c3g8rA_ |
|  | 48.7 | 12 | PDB header:biosynthetic protein Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e; PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472
10 | c3b8hA_ |
|  | 41.9 | 13 | PDB header:biosynthetic protein/transferase Chain: A: PDB Molecule:elongation factor 2; PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex
11 | d2f69a2 |
|  | 41.2 | 29 | Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases
12 | c3tr5C_ |
|  | 40.0 | 17 | PDB header:translation Chain: C: PDB Molecule:peptide chain release factor 3; PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii
13 | d1csha_ |
|  | 38.3 | 14 | Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase
14 | c3izq1_ |
|  | 37.9 | 15 | PDB header:ribosomal protein,hydrolase Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome
15 | c3frnA_ |
|  | 34.8 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:flagellar protein flga; PDBTitle: crystal structure of flagellar protein flga from thermotoga maritima2 msb8
16 | c2elfA_ |
|  | 32.2 | 13 | PDB header:translation Chain: A: PDB Molecule:protein translation elongation factor 1a; PDBTitle: crystal structure of the selb-like elongation factor ef-pyl2 from methanosarcina mazei
17 | c3cnlA_ |
|  | 31.8 | 16 | PDB header:signaling protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of gnp-bound ylqf from t. maritima
18 | c3m7oB_ |
|  | 30.8 | 11 | PDB header:immune system Chain: B: PDB Molecule:lymphocyte antigen 86; PDBTitle: crystal structure of mouse md-1 in complex with phosphatidylcholine
19 | c2ywfA_ |
|  | 30.0 | 12 | PDB header:translation Chain: A: PDB Molecule:gtp-binding protein lepa; PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus
20 | d1puja_ |
|  | 28.0 | 24 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins
21 | d1c8ba_ |
| not modelled | 28.0 | 23 | Fold:Phosphorylase/hydrolase-like Superfamily:HybD-like Family:Germination protease
22 | c1g7tA_ |
| not modelled | 27.3 | 18 | PDB header:translation Chain: A: PDB Molecule:translation initiation factor if2/eif5b; PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp
23 | d1vlia1 |
| not modelled | 27.1 | 17 | Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain
24 | c3bicA_ |
| not modelled | 25.8 | 18 | PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase, mitochondrial precursor; PDBTitle: crystal structure of human methylmalonyl-coa mutase
25 | c2j69D_ |
| not modelled | 25.3 | 11 | PDB header:hydrolase Chain: D: PDB Molecule:bacterial dynamin-like protein; PDBTitle: bacterial dynamin-like protein bdlp
26 | c1vliA_ |
| not modelled | 24.4 | 26 | PDB header:biosynthetic protein Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse; PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution
27 | c1xqhE_ |
| not modelled | 23.7 | 23 | PDB header:transferase Chain: E: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-4 PDBTitle: crystal structure of a ternary complex of the2 methyltransferase set9 (also known as set7/9) with a p533 peptide and sah
28 | c3ka5A_ |
| not modelled | 23.5 | 40 | PDB header:chaperone Chain: A: PDB Molecule:ribosome-associated protein y (psrp-1); PDBTitle: crystal structure of ribosome-associated protein y (psrp-1)2 from clostridium acetobutylicum. northeast structural3 genomics consortium target id car123a
29 | c3h6lA_ |
| not modelled | 23.1 | 15 | PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd2; PDBTitle: methyltransferase domain of human set domain-containing protein 2
30 | c3k2tA_ |
| not modelled | 22.7 | 40 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo2511 protein; PDBTitle: crystal structure of lmo2511 protein from listeria2 monocytogenes, northeast structural genomics consortium3 target lkr84a
31 | c3f9xA_ |
| not modelled | 22.4 | 38 | PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd8; PDBTitle: structural insights into lysine multiple methylation by set2 domain methyltransferases, set8-y334f / h4-lys20me2 /3 adohcy
32 | c1xuzA_ |
| not modelled | 22.3 | 18 | PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol
33 | c1zo1I_ |
| not modelled | 21.5 | 15 | PDB header:translation/rna Chain: I: PDB Molecule:translation initiation factor 2; PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex
34 | c2bm0A_ |
| not modelled | 21.4 | 18 | PDB header:elongation factor Chain: A: PDB Molecule:elongation factor g; PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a
35 | c3m5uA_ |
| not modelled | 21.3 | 13 | PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni
36 | c3opeA_ |
| not modelled | 21.2 | 46 | PDB header:transferase Chain: A: PDB Molecule:probable histone-lysine n-methyltransferase ash1l; PDBTitle: structural basis of auto-inhibitory mechanism of histone2 methyltransferase
37 | c1x5bA_ |
| not modelled | 21.0 | 11 | PDB header:protein binding Chain: A: PDB Molecule:signal transducing adaptor molecule 2; PDBTitle: the solution structure of the vhs domain of human signal2 transducing adaptor molecule 2
38 | c2z64C_ |
| not modelled | 21.0 | 14 | PDB header:immune system Chain: C: PDB Molecule:lymphocyte antigen 96; PDBTitle: crystal structure of mouse tlr4 and mouse md-2 complex
39 | d1h3ia2 |
| not modelled | 20.9 | 20 | Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases
40 | c3bo5A_ |
| not modelled | 20.7 | 31 | PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setmar; PDBTitle: crystal structure of methyltransferase domain of human histone-lysine2 n-methyltransferase setmar
41 | c3ooiA_ |
| not modelled | 20.3 | 46 | PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-36 and h4 PDBTitle: crystal structure of human histone-lysine n-methyltransferase nsd1 set2 domain in complex with s-adenosyl-l-methionine
42 | d1umqa_ |
| not modelled | 19.4 | 10 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like
43 | c1umqA_ |
| not modelled | 19.4 | 10 | PDB header:dna-binding protein Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein; PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
44 | d1ml9a_ |
| not modelled | 19.3 | 38 | Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases
45 | d1elka_ |
| not modelled | 18.8 | 12 | Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain
46 | c2xexA_ |
| not modelled | 18.5 | 17 | PDB header:translation Chain: A: PDB Molecule:elongation factor g; PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g
47 | d1mvha_ |
| not modelled | 17.6 | 31 | Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases
48 | c1mvhA_ |
| not modelled | 17.6 | 31 | PDB header:transferase Chain: A: PDB Molecule:cryptic loci regulator 4; PDBTitle: structure of the set domain histone lysine2 methyltransferase clr4
49 | d1dvpa1 |
| not modelled | 17.2 | 13 | Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain
50 | d1nuia2 |
| not modelled | 16.8 | 56 | Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger
51 | c2r3aA_ |
| not modelled | 16.2 | 23 | PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase suv39h2; PDBTitle: methyltransferase domain of human suppressor of variegation2 3-9 homolog 2
52 | c1s0uA_ |
| not modelled | 16.0 | 15 | PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit; PDBTitle: eif2gamma apo
53 | d1eucb1 |
| not modelled | 15.8 | 9 | Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains
54 | d2ctsa_ |
| not modelled | 15.8 | 15 | Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase
55 | c2k4zA_ |
| not modelled | 14.7 | 3 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dsrr; PDBTitle: solution nmr structure of allochromatium vinosum dsrr:2 northeast structural genomics consortium target op5
56 | c3cb4D_ |
| not modelled | 14.3 | 19 | PDB header:translation Chain: D: PDB Molecule:gtp-binding protein lepa; PDBTitle: the crystal structure of lepa
57 | d1csca_ |
| not modelled | 13.7 | 15 | Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase
58 | d1txna_ |
| not modelled | 13.7 | 14 | Fold:Coproporphyrinogen III oxidase Superfamily:Coproporphyrinogen III oxidase Family:Coproporphyrinogen III oxidase
59 | c3s8pA_ |
| not modelled | 13.6 | 46 | PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase suv420h1; PDBTitle: crystal structure of the set domain of human histone-lysine n-2 methyltransferase suv420h1 in complex with s-adenosyl-l-methionine
60 | d1ucva_ |
| not modelled | 12.7 | 23 | Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain
61 | c3by5A_ |
| not modelled | 12.7 | 30 | PDB header:biosynthetic protein Chain: A: PDB Molecule:cobalamin biosynthesis protein; PDBTitle: crystal structure of cobalamin biosynthesis protein chig from2 agrobacterium tumefaciens str. c58
62 | d3by5a1 |
| not modelled | 12.7 | 30 | Fold:CobE/GbiG C-terminal domain-like Superfamily:CobE/GbiG C-terminal domain-like Family:CobE/GbiG C-terminal domain-like
63 | c2qptA_ |
| not modelled | 12.3 | 16 | PDB header:endocytosis Chain: A: PDB Molecule:eh domain-containing protein-2; PDBTitle: crystal structure of an ehd atpase involved in membrane remodelling
64 | c3mu3A_ |
| not modelled | 12.2 | 11 | PDB header:immune system Chain: A: PDB Molecule:protein md-1; PDBTitle: crystal structure of chicken md-1 complexed with lipid iva
65 | d1ynya1 |
| not modelled | 12.0 | 22 | Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase)
66 | d1wjta_ |
| not modelled | 11.7 | 13 | Fold:N-cbl like Superfamily:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Family:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
67 | d2olra1 |
| not modelled | 11.7 | 15 | Fold:PEP carboxykinase-like Superfamily:PEP carboxykinase-like Family:PEP carboxykinase C-terminal domain
68 | c3simA_ |
| not modelled | 11.7 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:protein, family 18 chitinase; PDBTitle: crystallographic structure analysis of family 18 chitinase from crocus2 vernus
69 | c3nioF_ |
| not modelled | 11.4 | 23 | PDB header:hydrolase Chain: F: PDB Molecule:guanidinobutyrase; PDBTitle: crystal structure of pseudomonas aeruginosa guanidinobutyrase
70 | d1fx0a1 |
| not modelled | 11.4 | 18 | Fold:Left-handed superhelix Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
71 | c2rdo7_ |
| not modelled | 11.3 | 15 | PDB header:ribosome Chain: 7: PDB Molecule:elongation factor g; PDBTitle: 50s subunit with ef-g(gdpnp) and rrf bound
72 | c1e1cA_ |
| not modelled | 11.2 | 15 | PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase alpha chain; PDBTitle: methylmalonyl-coa mutase h244a mutant
73 | d1to6a_ |
| not modelled | 11.1 | 15 | Fold:Glycerate kinase I Superfamily:Glycerate kinase I Family:Glycerate kinase I
74 | c1skqB_ |
| not modelled | 10.8 | 18 | PDB header:translation Chain: B: PDB Molecule:elongation factor 1-alpha; PDBTitle: the crystal structure of sulfolobus solfataricus elongation2 factor 1-alpha in complex with magnesium and gdp
75 | d1fuea_ |
| not modelled | 10.8 | 17 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
76 | d1v8qa_ |
| not modelled | 10.7 | 37 | Fold:Barrel-sandwich hybrid Superfamily:Ribosomal L27 protein-like Family:Ribosomal L27 protein
77 | c3fin0_ |
| not modelled | 10.7 | 37 | PDB header:ribosome Chain: 0: PDB Molecule:50s ribosomal protein l27; PDBTitle: t. thermophilus 70s ribosome in complex with mrna, trnas2 and ef-tu.gdp.kirromycin ternary complex, fitted to a 6.43 a cryo-em map. this file contains the 50s subunit.
78 | c2hdnJ_ |
| not modelled | 10.7 | 14 | PDB header:translation Chain: J: PDB Molecule:elongation factor ef-tu; PDBTitle: trypsin-modified elongation factor tu in complex with2 tetracycline at 2.8 angstrom resolution
79 | d1hr0w_ |
| not modelled | 10.3 | 20 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like
80 | d1yv9a1 |
| not modelled | 10.3 | 15 | Fold:HAD-like Superfamily:HAD-like Family:NagD-like
81 | d1o0ya_ |
| not modelled | 10.0 | 16 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase
82 | d2f23a2 |
| not modelled | 10.0 | 14 | Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain
83 | c3b8iF_ |
| not modelled | 9.9 | 18 | PDB header:lyase Chain: F: PDB Molecule:pa4872 oxaloacetate decarboxylase; PDBTitle: crystal structure of oxaloacetate decarboxylase from pseudomonas2 aeruginosa (pa4872) in complex with oxalate and mg2+.
84 | d2py8a1 |
| not modelled | 9.9 | 10 | Fold:RbcX-like Superfamily:RbcX-like Family:RbcX-like
85 | c2qpwA_ |
| not modelled | 9.7 | 20 | PDB header:transcription Chain: A: PDB Molecule:pr domain zinc finger protein 2; PDBTitle: methyltransferase domain of human pr domain-containing2 protein 2
86 | d2h2ja2 |
| not modelled | 9.6 | 5 | Fold:beta-clip Superfamily:SET domain Family:RuBisCo LSMT catalytic domain
87 | c2gedB_ |
| not modelled | 9.4 | 18 | PDB header:protein transport, signaling protein Chain: B: PDB Molecule:signal recognition particle receptor beta PDBTitle: signal recognition particle receptor beta-subunit in2 nucleotide-free dimerized form
88 | c2f5jA_ |
| not modelled | 9.4 | 26 | PDB header:gene regulation Chain: A: PDB Molecule:mortality factor 4-like protein 1; PDBTitle: crystal structure of mrg domain from human mrg15
89 | c3nipB_ |
| not modelled | 9.3 | 19 | PDB header:hydrolase Chain: B: PDB Molecule:3-guanidinopropionase; PDBTitle: crystal structure of pseudomonas aeruginosa guanidinopropionase2 complexed with 1,6-diaminohexane
90 | c3mmpC_ |
| not modelled | 9.2 | 15 | PDB header:transferase Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts; PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins
91 | d1vf5c1 |
| not modelled | 9.1 | 36 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain
92 | c2w5zA_ |
| not modelled | 8.8 | 27 | PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase hrx; PDBTitle: ternary complex of the mixed lineage leukaemia (mll1) set2 domain with the cofactor product s-adenosylhomocysteine3 and histone peptide.
93 | d1z9ha1 |
| not modelled | 8.6 | 10 | Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain
94 | c3eoeC_ |
| not modelled | 8.5 | 12 | PDB header:transferase Chain: C: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pyruvate kinase from toxoplasma gondii, 55.m00007
95 | c3izyP_ |
| not modelled | 8.5 | 12 | PDB header:rna, ribosomal protein Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial; PDBTitle: mammalian mitochondrial translation initiation factor 2
96 | d1gq6a_ |
| not modelled | 8.4 | 28 | Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases
97 | d1pkla3 |
| not modelled | 8.1 | 12 | Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain
98 | d1xm3a_ |
| not modelled | 8.1 | 15 | Fold:TIM beta/alpha-barrel Superfamily:ThiG-like Family:ThiG-like
99 | d1wx0a1 |
| not modelled | 8.0 | 60 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0