Phyre 2 alignment of P39829 with c2gedB_

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Job Description | P39829
Confidence | 9.43% | Date | Thu Jan 5 12:00:53 GMT 2012
Rank | 87 | Aligned Residues | 45
% Identity | 18% | Template | c2gedB_
PDB info | PDB header:protein transport, signaling protein | Chain: B: PDB Molecule:signal recognition particle receptor beta | PDBTitle: signal recognition particle receptor beta-subunit in2 nucleotide-free dimerized form
Resolution | 2.20 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . |  |  |  |  |  | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | S | G | K | S | A | I | V | E | V | L | S | P | G | Q | R | P | T | K | R | G | L | I | Y | A | A | T | P | A | S | D | . | . | . | . | . | F | V | C | G | T | Q | Q | V | A | S | G | I | T | V | Q | V | F
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | S | G | K | T | S | L | L | T | L | L | T | A | D | Y | . | . | D | G | S | G | V | T | L | V | D | F | P | G | H | V | K | L | R | Y | K | L | S | D | Y | L | K | T | R | A | K | F | V | K | G | L | I | F
Template Known Secondary structure |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  | T | T |  | S |  |  |  | T | T | T |  |  |  |  | S |  |  |  |  |  |  |  |  |  |  | G | G | G |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 49 | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . |  |  | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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