Phyre 2 alignment of P39829 with c3izq1_

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Job Description | P39829
Confidence | 37.90% | Date | Thu Jan 5 12:00:53 GMT 2012
Rank | 14 | Aligned Residues | 53
% Identity | 15% | Template | c3izq1_
PDB info | PDB header:ribosomal protein,hydrolase | Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein; | PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome
Resolution | 9.50 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 377 | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . |  | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | N | V | V | E | K | A | L | G | S | I | A | K | S | G | K | S | A | I | V | E | V | L | S | P | G | Q | R | P | T | K | R | G | L | I | Y | A | A | T | P | A | S | . | D | F | V | C | G | T | Q | Q | V | A | S | G | I | T | V | Q | V | F | T
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Q | T | N | E | E | R | E | R | G | V | T | V | S | I | C | T | S | H | F | . | . | . | . | . | . | . | . | S | T | H | R | A | N | F | T | I | V | D | A | P | G | H | R | D | F | V | P | N | A | I | M | G | I | S | Q | A | D | M | A | I | L | C
Template Known Secondary structure |  |  |  |  |  |  |  |  | T | T | T |  |  | S |  | S |  |  |  |  | . | . | . | . | . | . | . | . |  |  | S | S |  |  |  |  |  |  |  |  |  | S | S | S |  |  |  |  |  |  | T | T | T | S | S |  |  | S |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 222 | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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