Phyre 2 alignment of P39829 with c3cnlA_

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Job Description | P39829
Confidence | 31.85% | Date | Thu Jan 5 12:00:53 GMT 2012
Rank | 17 | Aligned Residues | 25
% Identity | 16% | Template | c3cnlA_
PDB info | PDB header:signaling protein | Chain: A: PDB Molecule:putative uncharacterized protein; | PDBTitle: crystal structure of gnp-bound ylqf from t. maritima
Resolution | 2.00 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 407 | . | . | 410 | . | . | . | . | . | . | . |  |  |  |  |  |  | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | K | R | G | L | I | Y | A | A | T | P | A | . | . | . | . | . | . | S | D | F | V | C | G | T | Q | Q | V | A | S | G | I
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | E | N | G | V | K | I | L | D | T | P | G | I | L | Y | K | N | I | F | S | E | D | L | A | A | K | L | L | L | V | G | S
Template Known Secondary structure |  | T | T | S |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  | S |  |  |  |  |  |  |  |  |  | T | T | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 143 | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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