Phyre 2 Results for P39829

Email | l.a.kelley@imperial.ac.uk
Description | P39829
Date | Thu Jan 5 12:00:53 GMT 2012
Unique Job ID | 5823a77f3a0672ae

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3lazB_ |
|  | 100.0 | 98 | PDB header:lyase Chain: B: PDB Molecule:d-galactarate dehydratase; PDBTitle: the crystal structure of the n-terminal domain of d-2 galactarate dehydratase from escherichia coli cft073
2 | c3k3sG_ |
|  | 99.9 | 36 | PDB header:hydrolase Chain: G: PDB Molecule:altronate hydrolase; PDBTitle: crystal structure of altronate hydrolase (fragment 1-84) from shigella2 flexneri.
3 | c1qd1A_ |
|  | 72.7 | 14 | PDB header:transferase Chain: A: PDB Molecule:formiminotransferase-cyclodeaminase; PDBTitle: the crystal structure of the formiminotransferase domain of2 formiminotransferase-cyclodeaminase.
4 | c3degC_ |
|  | 59.7 | 19 | PDB header:ribosome Chain: C: PDB Molecule:gtp-binding protein lepa; PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp
5 | d2nu7b1 |
|  | 54.9 | 9 | Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains
6 | c1tt9B_ |
|  | 53.2 | 17 | PDB header:transferase, lyase Chain: B: PDB Molecule:formimidoyltransferase-cyclodeaminase PDBTitle: structure of the bifunctional and golgi associated2 formiminotransferase cyclodeaminase octamer
7 | c3cwcB_ |
|  | 52.7 | 14 | PDB header:transferase Chain: B: PDB Molecule:putative glycerate kinase 2; PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2
8 | d2zdra1 |
|  | 51.0 | 18 | Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain
9 | c3g8rA_ |
|  | 48.7 | 12 | PDB header:biosynthetic protein Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e; PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472
10 | c3b8hA_ |
|  | 41.9 | 13 | PDB header:biosynthetic protein/transferase Chain: A: PDB Molecule:elongation factor 2; PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex
11 | d2f69a2 |
|  | 41.2 | 29 | Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases
12 | c3tr5C_ |
|  | 40.0 | 17 | PDB header:translation Chain: C: PDB Molecule:peptide chain release factor 3; PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii
13 | d1csha_ |
|  | 38.3 | 14 | Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase
14 | c3izq1_ |
|  | 37.9 | 15 | PDB header:ribosomal protein,hydrolase Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome
15 | c3frnA_ |
|  | 34.8 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:flagellar protein flga; PDBTitle: crystal structure of flagellar protein flga from thermotoga maritima2 msb8
16 | c2elfA_ |
|  | 32.2 | 13 | PDB header:translation Chain: A: PDB Molecule:protein translation elongation factor 1a; PDBTitle: crystal structure of the selb-like elongation factor ef-pyl2 from methanosarcina mazei
17 | c3cnlA_ |
|  | 31.8 | 16 | PDB header:signaling protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of gnp-bound ylqf from t. maritima
18 | c3m7oB_ |
|  | 30.8 | 11 | PDB header:immune system Chain: B: PDB Molecule:lymphocyte antigen 86; PDBTitle: crystal structure of mouse md-1 in complex with phosphatidylcholine
19 | c2ywfA_ |
|  | 30.0 | 12 | PDB header:translation Chain: A: PDB Molecule:gtp-binding protein lepa; PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus
20 | d1puja_ |
|  | 28.0 | 24 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins
21 | d1c8ba_ |
| not modelled | 28.0 | 23 | Fold:Phosphorylase/hydrolase-like Superfamily:HybD-like Family:Germination protease
22 | c1g7tA_ |
| not modelled | 27.3 | 18 | PDB header:translation Chain: A: PDB Molecule:translation initiation factor if2/eif5b; PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp
23 | d1vlia1 |
| not modelled | 27.1 | 17 | Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain
24 | c3bicA_ |
| not modelled | 25.8 | 18 | PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase, mitochondrial precursor; PDBTitle: crystal structure of human methylmalonyl-coa mutase
25 | c2j69D_ |
| not modelled | 25.3 | 11 | PDB header:hydrolase Chain: D: PDB Molecule:bacterial dynamin-like protein; PDBTitle: bacterial dynamin-like protein bdlp
26 | c1vliA_ |
| not modelled | 24.4 | 26 | PDB header:biosynthetic protein Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse; PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution
27 | c1xqhE_ |
| not modelled | 23.7 | 23 | PDB header:transferase Chain: E: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-4 PDBTitle: crystal structure of a ternary complex of the2 methyltransferase set9 (also known as set7/9) with a p533 peptide and sah
28 | c3ka5A_ |
| not modelled | 23.5 | 40 | PDB header:chaperone Chain: A: PDB Molecule:ribosome-associated protein y (psrp-1); PDBTitle: crystal structure of ribosome-associated protein y (psrp-1)2 from clostridium acetobutylicum. northeast structural3 genomics consortium target id car123a
29 | c3h6lA_ |
| not modelled | 23.1 | 15 | PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd2; PDBTitle: methyltransferase domain of human set domain-containing protein 2
30 | c3k2tA_ |
| not modelled | 22.7 | 40 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo2511 protein; PDBTitle: crystal structure of lmo2511 protein from listeria2 monocytogenes, northeast structural genomics consortium3 target lkr84a
31 | c3f9xA_ |
| not modelled | 22.4 | 38 | PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd8; PDBTitle: structural insights into lysine multiple methylation by set2 domain methyltransferases, set8-y334f / h4-lys20me2 /3 adohcy
32 | c1xuzA_ |
| not modelled | 22.3 | 18 | PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol
33 | c1zo1I_ |
| not modelled | 21.5 | 15 | PDB header:translation/rna Chain: I: PDB Molecule:translation initiation factor 2; PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex
34 | c2bm0A_ |
| not modelled | 21.4 | 18 | PDB header:elongation factor Chain: A: PDB Molecule:elongation factor g; PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a
35 | c3m5uA_ |
| not modelled | 21.3 | 13 | PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni
36 | c3opeA_ |
| not modelled | 21.2 | 46 | PDB header:transferase Chain: A: PDB Molecule:probable histone-lysine n-methyltransferase ash1l; PDBTitle: structural basis of auto-inhibitory mechanism of histone2 methyltransferase
37 | c1x5bA_ |
| not modelled | 21.0 | 11 | PDB header:protein binding Chain: A: PDB Molecule:signal transducing adaptor molecule 2; PDBTitle: the solution structure of the vhs domain of human signal2 transducing adaptor molecule 2
38 | c2z64C_ |
| not modelled | 21.0 | 14 | PDB header:immune system Chain: C: PDB Molecule:lymphocyte antigen 96; PDBTitle: crystal structure of mouse tlr4 and mouse md-2 complex
39 | d1h3ia2 |
| not modelled | 20.9 | 20 | Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases
40 | c3bo5A_ |
| not modelled | 20.7 | 31 | PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setmar; PDBTitle: crystal structure of methyltransferase domain of human histone-lysine2 n-methyltransferase setmar
41 | c3ooiA_ |
| not modelled | 20.3 | 46 | PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-36 and h4 PDBTitle: crystal structure of human histone-lysine n-methyltransferase nsd1 set2 domain in complex with s-adenosyl-l-methionine
42 | d1umqa_ |
| not modelled | 19.4 | 10 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like
43 | c1umqA_ |
| not modelled | 19.4 | 10 | PDB header:dna-binding protein Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein; PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
44 | d1ml9a_ |
| not modelled | 19.3 | 38 | Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases
45 | d1elka_ |
| not modelled | 18.8 | 12 | Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain
46 | c2xexA_ |
| not modelled | 18.5 | 17 | PDB header:translation Chain: A: PDB Molecule:elongation factor g; PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g
47 | d1mvha_ |
| not modelled | 17.6 | 31 | Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases
48 | c1mvhA_ |
| not modelled | 17.6 | 31 | PDB header:transferase Chain: A: PDB Molecule:cryptic loci regulator 4; PDBTitle: structure of the set domain histone lysine2 methyltransferase clr4
49 | d1dvpa1 |
| not modelled | 17.2 | 13 | Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain
50 | d1nuia2 |
| not modelled | 16.8 | 56 | Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger
51 | c2r3aA_ |
| not modelled | 16.2 | 23 | PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase suv39h2; PDBTitle: methyltransferase domain of human suppressor of variegation2 3-9 homolog 2
52 | c1s0uA_ |
| not modelled | 16.0 | 15 | PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit; PDBTitle: eif2gamma apo
53 | d1eucb1 |
| not modelled | 15.8 | 9 | Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains
54 | d2ctsa_ |
| not modelled | 15.8 | 15 | Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase
55 | c2k4zA_ |
| not modelled | 14.7 | 3 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dsrr; PDBTitle: solution nmr structure of allochromatium vinosum dsrr:2 northeast structural genomics consortium target op5
56 | c3cb4D_ |
| not modelled | 14.3 | 19 | PDB header:translation Chain: D: PDB Molecule:gtp-binding protein lepa; PDBTitle: the crystal structure of lepa
57 | d1csca_ |
| not modelled | 13.7 | 15 | Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase
58 | d1txna_ |
| not modelled | 13.7 | 14 | Fold:Coproporphyrinogen III oxidase Superfamily:Coproporphyrinogen III oxidase Family:Coproporphyrinogen III oxidase
59 | c3s8pA_ |
| not modelled | 13.6 | 46 | PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase suv420h1; PDBTitle: crystal structure of the set domain of human histone-lysine n-2 methyltransferase suv420h1 in complex with s-adenosyl-l-methionine
60 | d1ucva_ |
| not modelled | 12.7 | 23 | Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain
61 | c3by5A_ |
| not modelled | 12.7 | 30 | PDB header:biosynthetic protein Chain: A: PDB Molecule:cobalamin biosynthesis protein; PDBTitle: crystal structure of cobalamin biosynthesis protein chig from2 agrobacterium tumefaciens str. c58
62 | d3by5a1 |
| not modelled | 12.7 | 30 | Fold:CobE/GbiG C-terminal domain-like Superfamily:CobE/GbiG C-terminal domain-like Family:CobE/GbiG C-terminal domain-like
63 | c2qptA_ |
| not modelled | 12.3 | 16 | PDB header:endocytosis Chain: A: PDB Molecule:eh domain-containing protein-2; PDBTitle: crystal structure of an ehd atpase involved in membrane remodelling
64 | c3mu3A_ |
| not modelled | 12.2 | 11 | PDB header:immune system Chain: A: PDB Molecule:protein md-1; PDBTitle: crystal structure of chicken md-1 complexed with lipid iva
65 | d1ynya1 |
| not modelled | 12.0 | 22 | Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase)
66 | d1wjta_ |
| not modelled | 11.7 | 13 | Fold:N-cbl like Superfamily:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Family:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
67 | d2olra1 |
| not modelled | 11.7 | 15 | Fold:PEP carboxykinase-like Superfamily:PEP carboxykinase-like Family:PEP carboxykinase C-terminal domain
68 | c3simA_ |
| not modelled | 11.7 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:protein, family 18 chitinase; PDBTitle: crystallographic structure analysis of family 18 chitinase from crocus2 vernus
69 | c3nioF_ |
| not modelled | 11.4 | 23 | PDB header:hydrolase Chain: F: PDB Molecule:guanidinobutyrase; PDBTitle: crystal structure of pseudomonas aeruginosa guanidinobutyrase
70 | d1fx0a1 |
| not modelled | 11.4 | 18 | Fold:Left-handed superhelix Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
71 | c2rdo7_ |
| not modelled | 11.3 | 15 | PDB header:ribosome Chain: 7: PDB Molecule:elongation factor g; PDBTitle: 50s subunit with ef-g(gdpnp) and rrf bound
72 | c1e1cA_ |
| not modelled | 11.2 | 15 | PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase alpha chain; PDBTitle: methylmalonyl-coa mutase h244a mutant
73 | d1to6a_ |
| not modelled | 11.1 | 15 | Fold:Glycerate kinase I Superfamily:Glycerate kinase I Family:Glycerate kinase I
74 | c1skqB_ |
| not modelled | 10.8 | 18 | PDB header:translation Chain: B: PDB Molecule:elongation factor 1-alpha; PDBTitle: the crystal structure of sulfolobus solfataricus elongation2 factor 1-alpha in complex with magnesium and gdp
75 | d1fuea_ |
| not modelled | 10.8 | 17 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
76 | d1v8qa_ |
| not modelled | 10.7 | 37 | Fold:Barrel-sandwich hybrid Superfamily:Ribosomal L27 protein-like Family:Ribosomal L27 protein
77 | c3fin0_ |
| not modelled | 10.7 | 37 | PDB header:ribosome Chain: 0: PDB Molecule:50s ribosomal protein l27; PDBTitle: t. thermophilus 70s ribosome in complex with mrna, trnas2 and ef-tu.gdp.kirromycin ternary complex, fitted to a 6.43 a cryo-em map. this file contains the 50s subunit.
78 | c2hdnJ_ |
| not modelled | 10.7 | 14 | PDB header:translation Chain: J: PDB Molecule:elongation factor ef-tu; PDBTitle: trypsin-modified elongation factor tu in complex with2 tetracycline at 2.8 angstrom resolution
79 | d1hr0w_ |
| not modelled | 10.3 | 20 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like
80 | d1yv9a1 |
| not modelled | 10.3 | 15 | Fold:HAD-like Superfamily:HAD-like Family:NagD-like
81 | d1o0ya_ |
| not modelled | 10.0 | 16 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase
82 | d2f23a2 |
| not modelled | 10.0 | 14 | Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain
83 | c3b8iF_ |
| not modelled | 9.9 | 18 | PDB header:lyase Chain: F: PDB Molecule:pa4872 oxaloacetate decarboxylase; PDBTitle: crystal structure of oxaloacetate decarboxylase from pseudomonas2 aeruginosa (pa4872) in complex with oxalate and mg2+.
84 | d2py8a1 |
| not modelled | 9.9 | 10 | Fold:RbcX-like Superfamily:RbcX-like Family:RbcX-like
85 | c2qpwA_ |
| not modelled | 9.7 | 20 | PDB header:transcription Chain: A: PDB Molecule:pr domain zinc finger protein 2; PDBTitle: methyltransferase domain of human pr domain-containing2 protein 2
86 | d2h2ja2 |
| not modelled | 9.6 | 5 | Fold:beta-clip Superfamily:SET domain Family:RuBisCo LSMT catalytic domain
87 | c2gedB_ |
| not modelled | 9.4 | 18 | PDB header:protein transport, signaling protein Chain: B: PDB Molecule:signal recognition particle receptor beta PDBTitle: signal recognition particle receptor beta-subunit in2 nucleotide-free dimerized form
88 | c2f5jA_ |
| not modelled | 9.4 | 26 | PDB header:gene regulation Chain: A: PDB Molecule:mortality factor 4-like protein 1; PDBTitle: crystal structure of mrg domain from human mrg15
89 | c3nipB_ |
| not modelled | 9.3 | 19 | PDB header:hydrolase Chain: B: PDB Molecule:3-guanidinopropionase; PDBTitle: crystal structure of pseudomonas aeruginosa guanidinopropionase2 complexed with 1,6-diaminohexane
90 | c3mmpC_ |
| not modelled | 9.2 | 15 | PDB header:transferase Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts; PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins
91 | d1vf5c1 |
| not modelled | 9.1 | 36 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain
92 | c2w5zA_ |
| not modelled | 8.8 | 27 | PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase hrx; PDBTitle: ternary complex of the mixed lineage leukaemia (mll1) set2 domain with the cofactor product s-adenosylhomocysteine3 and histone peptide.
93 | d1z9ha1 |
| not modelled | 8.6 | 10 | Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain
94 | c3eoeC_ |
| not modelled | 8.5 | 12 | PDB header:transferase Chain: C: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pyruvate kinase from toxoplasma gondii, 55.m00007
95 | c3izyP_ |
| not modelled | 8.5 | 12 | PDB header:rna, ribosomal protein Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial; PDBTitle: mammalian mitochondrial translation initiation factor 2
96 | d1gq6a_ |
| not modelled | 8.4 | 28 | Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases
97 | d1pkla3 |
| not modelled | 8.1 | 12 | Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain
98 | d1xm3a_ |
| not modelled | 8.1 | 15 | Fold:TIM beta/alpha-barrel Superfamily:ThiG-like Family:ThiG-like
99 | d1wx0a1 |
| not modelled | 8.0 | 60 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase