Email l.a.kelley@imperial.ac.uk Description P39901 Date Thu Jan 5 12:01:08 GMT 2012 Unique Job ID 56c1867131a0bccc

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1opca_ 99.7 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 2 c2k4jA_ 99.7 23 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: arsr dna binding domain 3 c2hwvA_ 99.7 19 PDB header:transcription Chain: A: PDB Molecule:dna-binding response regulator vicr; PDBTitle: crystal structure of an essential response regulator dna binding2 domain, vicrc in enterococcus faecalis, a member of the yycf3 subfamily. 4 c2zxjB_ 99.7 21 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulatory protein walr; PDBTitle: crystal structure of yycf dna-binding domain from staphylococcus2 aureus 5 c2jzyA_ 99.7 19 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein pcor; PDBTitle: solution structure of c-terminal effector domain of2 putative two-component-system response regulator involved3 in copper resistance from klebsiella pneumoniae 6 c2hqnA_ 99.7 21 PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism 7 d1gxqa_ 99.7 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 8 c2oqrA_ 99.7 26 PDB header:transcription,signaling protein Chain: A: PDB Molecule:sensory transduction protein regx3; PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis 9 d1p2fa1 99.7 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 10 c1ys7B_ 99.6 22 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulatory protein prra; PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+ 11 c2pmuD_ 99.6 18 PDB header:transcription regulation Chain: D: PDB Molecule:response regulator phop; PDBTitle: crystal structure of the dna-binding domain of phop 12 c2hqrA_ 99.6 21 PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism 13 d1ys7a1 99.5 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 14 c2gwrA_ 99.5 24 PDB header:signaling protein Chain: A: PDB Molecule:dna-binding response regulator mtra; PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis 15 c1p2fA_ 99.5 22 PDB header:transcription Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog 16 c3r0jA_ 99.4 17 PDB header:dna binding protein Chain: A: PDB Molecule:possible two component system response transcriptional PDBTitle: structure of phop from mycobacterium tuberculosis 17 d1kgsa1 99.4 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 18 d2ff4a1 99.4 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 19 c1kgsA_ 99.2 22 PDB header:dna binding protein Chain: A: PDB Molecule:dna binding response regulator d; PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima 20 c2ff4B_ 98.1 17 PDB header:transcription Chain: B: PDB Molecule:probable regulatory protein embr; PDBTitle: mycobacterium tuberculosis embr in complex with low affinity2 phosphopeptide 21 d1biaa1 not modelled 90.0 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Biotin repressor-like 22 c3klnC_ not modelled 81.8 7 PDB header:transcription Chain: C: PDB Molecule:transcriptional regulator, luxr family; PDBTitle: vibrio cholerae vpst 23 c1rnlA_ not modelled 79.5 12 PDB header:signal transduction protein Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl; PDBTitle: the nitrate/nitrite response regulator protein narl from narl 24 c1zn2A_ not modelled 70.9 18 PDB header:transcription regulator Chain: A: PDB Molecule:response regulatory protein; PDBTitle: low resolution structure of response regulator styr 25 c3c3wB_ not modelled 69.4 17 PDB header:transcription Chain: B: PDB Molecule:two component transcriptional regulatory protein devr; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr 26 d1j5ya1 not modelled 69.3 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Biotin repressor-like 27 c1h0mD_ not modelled 48.1 12 PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna 28 c2q0oA_ not modelled 46.5 24 PDB header:transcription Chain: A: PDB Molecule:probable transcriptional activator protein trar; PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing 29 c3qp5C_ not modelled 46.0 12 PDB header:transcription Chain: C: PDB Molecule:cvir transcriptional regulator; PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl) 30 c3sztB_ not modelled 43.6 12 PDB header:transcription Chain: B: PDB Molecule:quorum-sensing control repressor; PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone 31 c2jpcA_ not modelled 43.0 10 PDB header:dna binding protein Chain: A: PDB Molecule:ssrb; PDBTitle: ssrb dna binding protein 32 c2ewnA_ not modelled 42.0 24 PDB header:ligase, transcription Chain: A: PDB Molecule:bira bifunctional protein; PDBTitle: ecoli biotin repressor with co-repressor analog 33 c1zljE_ not modelled 36.3 29 PDB header:transcription Chain: E: PDB Molecule:dormancy survival regulator; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain 34 d1yioa1 not modelled 36.2 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators) 35 d1l3la1 not modelled 36.2 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators) 36 d1p4wa_ not modelled 34.6 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators) 37 d1t6sa1 not modelled 33.3 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ScpB/YpuH-like 38 c1x3uA_ not modelled 30.0 6 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein fixj; PDBTitle: solution structure of the c-terminal transcriptional2 activator domain of fixj from sinorhizobium melilot 39 d1fsea_ not modelled 29.9 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators) 40 d1a04a1 not modelled 28.4 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators) 41 c2rnjA_ not modelled 23.4 18 PDB header:transcription Chain: A: PDB Molecule:response regulator protein vrar; PDBTitle: nmr structure of the s. aureus vrar dna binding domain 42 c1j5yA_ not modelled 23.1 17 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, biotin repressor family; PDBTitle: crystal structure of transcriptional regulator (tm1602) from2 thermotoga maritima at 2.3 a resolution 43 d2q07a2 not modelled 22.0 20 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:AF0587 domain-like 44 c3kz4A_ not modelled 20.1 15 PDB header:virus Chain: A: PDB Molecule:inner capsid protein vp2; PDBTitle: crystal structure of the rotavirus double layered particle 45 c3gzuB_ not modelled 19.6 13 PDB header:virus Chain: B: PDB Molecule:inner capsid protein vp2; PDBTitle: vp7 recoated rotavirus dlp 46 c3cloC_ not modelled 18.8 18 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution 47 c2krfB_ not modelled 18.8 12 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulatory protein coma; PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a 48 c1debA_ not modelled 18.5 29 PDB header:structural protein Chain: A: PDB Molecule:adenomatous polyposis coli protein; PDBTitle: crystal structure of the n-terminal coiled coil domain from2 apc 49 c3he5A_ not modelled 18.0 43 PDB header:de novo protein Chain: A: PDB Molecule:synzip1; PDBTitle: heterospecific coiled-coil pair synzip2:synzip1 50 d1pg5b2 not modelled 16.3 25 Fold:Rubredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 51 d1ud0a_ not modelled 15.7 18 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Heat shock protein 70kD (HSP70), C-terminal subdomain Family:Heat shock protein 70kD (HSP70), C-terminal subdomain 52 d1fcda2 not modelled 13.2 23 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 53 c3mzyA_ not modelled 11.9 22 PDB header:rna binding protein Chain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a 54 d1vqoo1 not modelled 11.7 13 Fold:Ribosomal proteins L15p and L18e Superfamily:Ribosomal proteins L15p and L18e Family:Ribosomal proteins L15p and L18e 55 d1xsva_ not modelled 11.7 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:YlxM/p13-like 56 c1ud0B_ not modelled 11.5 18 PDB header:chaperone Chain: B: PDB Molecule:70 kda heat-shock-like protein; PDBTitle: crystal structure of the c-terminal 10-kda subdomain of hsc70 57 d1or7a1 not modelled 11.0 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 58 c2l5gB_ not modelled 10.9 15 PDB header:transcription regulator Chain: B: PDB Molecule:putative uncharacterized protein ncor2; PDBTitle: co-ordinates and 1h, 13c and 15n chemical shift assignments for the2 complex of gps2 53-90 and smrt 167-207 59 c2o8xA_ not modelled 10.2 19 PDB header:transcription Chain: A: PDB Molecule:probable rna polymerase sigma-c factor; PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc 60 d1o57a1 not modelled 9.4 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:N-terminal domain of Bacillus PurR 61 c2p32B_ not modelled 9.3 28 PDB header:chaperone Chain: B: PDB Molecule:heat shock 70 kda protein a; PDBTitle: crystal structure of the c-terminal 10 kda subdomain from c. elegans2 hsp70 62 c3ocmB_ not modelled 8.5 15 PDB header:membrane protein Chain: B: PDB Molecule:putative membrane protein; PDBTitle: the crystal structure of a domain from a possible membrane protein of2 bordetella parapertussis 63 c2q07A_ not modelled 7.9 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein af0587; PDBTitle: crystal structure of af0587, a protein of unknown function 64 c3k69A_ not modelled 7.7 17 PDB header:transcription Chain: A: PDB Molecule:putative transcription regulator; PDBTitle: crystal structure of a putative transcriptional regulator (lp_0360)2 from lactobacillus plantarum at 1.95 a resolution 65 c2k5cA_ not modelled 7.6 21 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 66 d1jhfa1 not modelled 7.6 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LexA repressor, N-terminal DNA-binding domain 67 c3hugA_ not modelled 6.4 5 PDB header:transcription/membrane protein Chain: A: PDB Molecule:rna polymerase sigma factor; PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl 68 d1klva_ not modelled 6.1 7 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:GABARAP-like 69 d1rrqa1 not modelled 5.8 16 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 70 d1zela1 not modelled 5.5 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Rv2827c N-terminal domain-like 71 c3kblA_ not modelled 5.2 27 PDB header:protein binding Chain: A: PDB Molecule:female germline-specific tumor suppressor gld-1; PDBTitle: crystal structure of the gld-1 homodimerization domain from2 caenorhabditis elegans n169a mutant at 2.28 a resolution 72 c2gv1A_ not modelled 5.1 43 PDB header:hydrolase Chain: A: PDB Molecule:probable acylphosphatase; PDBTitle: nmr solution structure of the acylphosphatase from2 eschaerichia coli 73 d2cz4a1 not modelled 5.1 20 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 74 c3c4mD_ not modelled 5.1 40 PDB header:membrane protein Chain: D: PDB Molecule:parathyroid hormone; PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r) 75 c3c4mC_ not modelled 5.1 40 PDB header:membrane protein Chain: C: PDB Molecule:parathyroid hormone; PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r)