Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	H	R	L	W	T	L	I	R	K	E	L	Q	S	L	L	R	E	P	Q	T	R	A	I	L	I	L	P	V	L	I	Q	V	I	L	F	P	F	A	A	T	L	E	V	T	N	A	T	I	A	I	Y	D	E	D	N	G	E	H
Secondary structure
SS confidence
Disorder		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	V	E	L	T	Q	R	F	A	R	A	S	A	F	T	H	V	L	L	L	K	S	P	Q	E	I	R	P	T	I	D	T	Q	K	A	L	L	L	V	R	F	P	A	D	F	S	R	K	L	D	T	F	Q	T	A	P	L	Q	L	I
Secondary structure
SS confidence
Disorder																																																				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	D	G	R	N	S	N	S	A	Q	I	A	A	N	Y	L	Q	Q	I	V	K	N	Y	Q	Q	E	L	L	E	G	K	P	K	P	N	N	S	E	L	V	V	R	N	W	Y	N	P	N	L	D	Y	K	W	F	V	V	P	S	L	I
Secondary structure
SS confidence
Disorder					?	?																								?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	M	I	T	T	I	G	V	M	I	V	T	S	L	S	V	A	R	E	R	E	Q	G	T	L	D	Q	L	L	V	S	P	L	T	T	W	Q	I	F	I	G	K	A	V	P	A	L	I	V	A	T	F	Q	A	T	I	V	L	A	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	I	W	A	Y	Q	I	P	F	A	G	S	L	A	L	F	Y	F	T	M	V	I	Y	G	L	S	L	V	G	F	G	L	L	I	S	S	L	C	S	T	Q	Q	Q	A	F	I	G	V	F	V	F	M	M	P	A	I	L	L	S	G
Secondary structure
SS confidence
Disorder																																							?	?	?																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		Y	V	S	P	V	E	N	M	P	V	W	L	Q	N	L	T	W	I	N	P	I	R	H	F	T	D	I	T	K	Q	I	Y	L	K	D	A	S	L	D	I	V	W	N	S	L	W	P	L	L	V	I	T	A	T	T	G	S	A	A	Y
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.
Sequence		A	M	F	R	R	K	V	M
Secondary structure
SS confidence
Disorder					?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3cni chain A Region: 49 - 164 Aligned: 114 Modelled: 116 Confidence: 99.4% Identity: 14% PDB header:transport protein Chain: A: PDB Molecule:putative abc type-2 transporter; PDBTitle: crystal structure of a domain of a putative abc type-2 transporter2 from thermotoga maritima msb8 Phyre2 PDB 2p0s chain A domain 1 Region: 46 - 149 Aligned: 95 Modelled: 97 Confidence: 95.7% Identity: 18% Fold: Periplasmic binding protein-like II Superfamily: Periplasmic binding protein-like II Family: PG0945 N-terminal domain-like Phyre2 PDB 3eul chain B Region: 45 - 100 Aligned: 55 Modelled: 56 Confidence: 86.3% Identity: 7% PDB header:transcription Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis Phyre2 PDB 1a04 chain A domain 2 Region: 46 - 100 Aligned: 54 Modelled: 55 Confidence: 79.2% Identity: 19% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 1rnl chain A Region: 46 - 100 Aligned: 54 Modelled: 55 Confidence: 77.8% Identity: 19% PDB header:signal transduction protein Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl; PDBTitle: the nitrate/nitrite response regulator protein narl from narl Phyre2 PDB 1a2o chain A domain 1 Region: 46 - 100 Aligned: 54 Modelled: 55 Confidence: 73.1% Identity: 17% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 3cz5 chain B Region: 46 - 100 Aligned: 54 Modelled: 55 Confidence: 70.9% Identity: 15% PDB header:transcription regulator Chain: B: PDB Molecule:two-component response regulator, luxr family; PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1 Phyre2 PDB 1a2o chain B Region: 46 - 100 Aligned: 54 Modelled: 55 Confidence: 70.7% Identity: 17% PDB header:bacterial chemotaxis Chain: B: PDB Molecule:cheb methylesterase; PDBTitle: structural basis for methylesterase cheb regulation by a2 phosphorylation-activated domain Phyre2 PDB 1dz3 chain A Region: 47 - 100 Aligned: 53 Modelled: 54 Confidence: 70.0% Identity: 15% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 3b2n chain A Region: 48 - 100 Aligned: 52 Modelled: 53 Confidence: 66.5% Identity: 12% PDB header:transcription Chain: A: PDB Molecule:uncharacterized protein q99uf4; PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus Phyre2 PDB 3t8y chain A Region: 48 - 100 Aligned: 52 Modelled: 53 Confidence: 61.0% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb Phyre2 PDB 2qv0 chain A Region: 48 - 100 Aligned: 52 Modelled: 53 Confidence: 59.8% Identity: 15% PDB header:transcription Chain: A: PDB Molecule:protein mrke; PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae Phyre2 PDB 3c3w chain B Region: 48 - 100 Aligned: 52 Modelled: 53 Confidence: 55.2% Identity: 13% PDB header:transcription Chain: B: PDB Molecule:two component transcriptional regulatory protein devr; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr Phyre2 PDB 3cnb chain C Region: 47 - 100 Aligned: 53 Modelled: 54 Confidence: 52.7% Identity: 21% PDB header:dna binding protein Chain: C: PDB Molecule:dna-binding response regulator, merr family; PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h Phyre2 PDB 1v95 chain A Region: 42 - 104 Aligned: 63 Modelled: 63 Confidence: 50.6% Identity: 5% Fold: Anticodon-binding domain-like Superfamily: Class II aaRS ABD-related Family: Anticodon-binding domain of Class II aaRS Phyre2 PDB 1hey chain A Region: 46 - 100 Aligned: 53 Modelled: 55 Confidence: 46.0% Identity: 4% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 3fkq chain A Region: 46 - 124 Aligned: 78 Modelled: 78 Confidence: 46.0% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntrc-like two-domain protein; PDBTitle: crystal structure of ntrc-like two-domain protein (rer070207001320)2 from eubacterium rectale at 2.10 a resolution Phyre2 PDB 2gwr chain A Region: 44 - 100 Aligned: 54 Modelled: 57 Confidence: 44.4% Identity: 11% PDB header:signaling protein Chain: A: PDB Molecule:dna-binding response regulator mtra; PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis Phyre2 PDB 3f6c chain B Region: 47 - 100 Aligned: 52 Modelled: 54 Confidence: 40.9% Identity: 10% PDB header:dna binding protein Chain: B: PDB Molecule:positive transcription regulator evga; PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli Phyre2 PDB 3cg4 chain A Region: 46 - 100 Aligned: 52 Modelled: 55 Confidence: 39.9% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like); PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 Phyre2 1 c3cniA_ 2 d2p0sa1 3 c3eulB_ 4 d1a04a2 5 c1rnlA_ 6 d1a2oa1 7 c3cz5B_ 8 c1a2oB_ 9 d1dz3a_ 10 c3b2nA_ 11 c3t8yA_ 12 c2qv0A_ 13 c3c3wB_ 14 c3cnbC_ 15 d1v95a_ 16 d1heya_ 17 c3fkqA_ 18 c2gwrA_ 19 c3f6cB_ 20 c3cg4A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3cniA_ 99.4 14 PDB header:transport protein Chain: A: PDB Molecule:putative abc type-2 transporter; PDBTitle: crystal structure of a domain of a putative abc type-2 transporter2 from thermotoga maritima msb8 2 d2p0sa1 95.7 18 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:PG0945 N-terminal domain-like 3 c3eulB_ 86.3 7 PDB header:transcription Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis 4 d1a04a2 79.2 19 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 5 c1rnlA_ 77.8 19 PDB header:signal transduction protein Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl; PDBTitle: the nitrate/nitrite response regulator protein narl from narl 6 d1a2oa1 73.1 17 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 7 c3cz5B_ 70.9 15 PDB header:transcription regulator Chain: B: PDB Molecule:two-component response regulator, luxr family; PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1 8 c1a2oB_ 70.7 17 PDB header:bacterial chemotaxis Chain: B: PDB Molecule:cheb methylesterase; PDBTitle: structural basis for methylesterase cheb regulation by a2 phosphorylation-activated domain 9 d1dz3a_ 70.0 15 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 10 c3b2nA_ 66.5 12 PDB header:transcription Chain: A: PDB Molecule:uncharacterized protein q99uf4; PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus 11 c3t8yA_ 61.0 13 PDB header:hydrolase Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb 12 c2qv0A_ 59.8 15 PDB header:transcription Chain: A: PDB Molecule:protein mrke; PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae 13 c3c3wB_ 55.2 13 PDB header:transcription Chain: B: PDB Molecule:two component transcriptional regulatory protein devr; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr 14 c3cnbC_ 52.7 21 PDB header:dna binding protein Chain: C: PDB Molecule:dna-binding response regulator, merr family; PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h 15 d1v95a_ 50.6 5 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 16 d1heya_ 46.0 4 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 17 c3fkqA_ 46.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntrc-like two-domain protein; PDBTitle: crystal structure of ntrc-like two-domain protein (rer070207001320)2 from eubacterium rectale at 2.10 a resolution 18 c2gwrA_ 44.4 11 PDB header:signaling protein Chain: A: PDB Molecule:dna-binding response regulator mtra; PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis 19 c3f6cB_ 40.9 10 PDB header:dna binding protein Chain: B: PDB Molecule:positive transcription regulator evga; PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli 20 c3cg4A_ 39.9 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like); PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 21 c3kyiB_ not modelled 39.7 17 PDB header:transferase Chain: B: PDB Molecule:chey6 protein; PDBTitle: crystal structure of the phosphorylated p1 domain of chea3 in complex2 with chey6 from r. sphaeroides 22 d1p6qa_ not modelled 38.2 11 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 23 d1jbea_ not modelled 37.8 5 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 24 c3r0jA_ not modelled 33.5 11 PDB header:dna binding protein Chain: A: PDB Molecule:possible two component system response transcriptional PDBTitle: structure of phop from mycobacterium tuberculosis 25 d2ayxa1 not modelled 32.5 7 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 26 c3k2dA_ not modelled 29.5 4 PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus 27 c1p99A_ not modelled 28.8 5 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pg110; PDBTitle: 1.7a crystal structure of protein pg110 from staphylococcus2 aureus 28 d1p99a_ not modelled 28.8 5 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 29 d1xs5a_ not modelled 28.8 4 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 30 d1dbwa_ not modelled 26.6 17 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 31 d1s8na_ not modelled 26.5 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 32 c1kgsA_ not modelled 26.5 14 PDB header:dna binding protein Chain: A: PDB Molecule:dna binding response regulator d; PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima 33 d1u0sy_ not modelled 23.9 8 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 34 c3a0rB_ not modelled 21.6 12 PDB header:transferase Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360) 35 c3nhzA_ not modelled 21.5 14 PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra 36 c3grcD_ not modelled 20.1 13 PDB header:transferase Chain: D: PDB Molecule:sensor protein, kinase; PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666 37 d1zgza1 not modelled 20.1 22 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 38 c3khtA_ not modelled 17.8 12 PDB header:signaling protein Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator from hahella chejuensis 39 c3t6kB_ not modelled 17.8 19 PDB header:signaling protein Chain: B: PDB Molecule:response regulator receiver; PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution 40 c1zn2A_ not modelled 17.7 15 PDB header:transcription regulator Chain: A: PDB Molecule:response regulatory protein; PDBTitle: low resolution structure of response regulator styr 41 d1ys7a2 not modelled 17.4 16 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 42 c3chgB_ not modelled 16.5 12 PDB header:ligand binding protein Chain: B: PDB Molecule:glycine betaine-binding protein; PDBTitle: the compatible solute-binding protein opuac from bacillus2 subtilis in complex with dmsa 43 d1kgsa2 not modelled 16.5 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 44 c1ys7B_ not modelled 16.4 12 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulatory protein prra; PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+ 45 c3q9sA_ not modelled 16.1 16 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding response regulator; PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans 46 c2rejA_ not modelled 16.1 3 PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation 47 d1mvoa_ not modelled 16.0 24 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 48 d1xhfa1 not modelled 15.4 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 49 c2oqrA_ not modelled 15.3 14 PDB header:transcription,signaling protein Chain: A: PDB Molecule:sensory transduction protein regx3; PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis 50 c3hdgE_ not modelled 15.3 14 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes 51 c2h9qC_ not modelled 15.3 9 PDB header:transcription Chain: C: PDB Molecule:hth-type transcriptional regulator catm; PDBTitle: crystal structure of the effector binding domain of a catm2 variant (r156h) 52 c3nhmA_ not modelled 15.3 10 PDB header:signaling protein Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from myxococcus xanthus 53 c3ir1F_ not modelled 15.1 4 PDB header:protein binding Chain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis 54 c3breA_ not modelled 14.8 12 PDB header:signaling protein Chain: A: PDB Molecule:probable two-component response regulator; PDBTitle: crystal structure of p.aeruginosa pa3702 55 c3hv2B_ not modelled 14.4 12 PDB header:signaling protein Chain: B: PDB Molecule:response regulator/hd domain protein; PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5 56 c3cg0A_ not modelled 13.7 6 PDB header:lyase Chain: A: PDB Molecule:response regulator receiver modulated diguanylate cyclase PDBTitle: crystal structure of signal receiver domain of modulated diguanylate2 cyclase from desulfovibrio desulfuricans g20, an example of alternate3 folding 57 c3cu5B_ not modelled 13.0 13 PDB header:transcription regulator Chain: B: PDB Molecule:two component transcriptional regulator, arac family; PDBTitle: crystal structure of a two component transcriptional regulator arac2 from clostridium phytofermentans isdg 58 c3ho7A_ not modelled 13.0 3 PDB header:transcription Chain: A: PDB Molecule:oxyr; PDBTitle: crystal structure of oxyr from porphyromonas gingivalis 59 c2qzjC_ not modelled 13.0 18 PDB header:transcription Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile 60 d1peya_ not modelled 12.9 16 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 61 c3l6gA_ not modelled 12.6 11 PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation 62 c3i42A_ not modelled 12.6 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey- PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus 63 c3lteH_ not modelled 12.1 9 PDB header:transcription Chain: H: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri 64 c2rjnA_ not modelled 11.6 13 PDB header:hydrolase Chain: A: PDB Molecule:response regulator receiver:metal-dependent PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis 65 d1zesa1 not modelled 11.3 8 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 66 d1ny5a1 not modelled 11.1 6 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 67 c3hzhA_ not modelled 10.2 9 PDB header:signaling protein Chain: A: PDB Molecule:chemotaxis response regulator (chey-3); PDBTitle: crystal structure of the chex-chey-bef3-mg+2 complex from2 borrelia burgdorferi 68 d1yioa2 not modelled 10.0 15 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 69 c2qxyB_ not modelled 9.6 16 PDB header:transcription Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from thermotoga2 maritima 70 c2hqrA_ not modelled 9.6 12 PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism 71 d1krwa_ not modelled 9.3 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 72 c3dzdA_ not modelled 9.2 16 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state 73 d1w25a1 not modelled 8.8 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 74 c3c3mA_ not modelled 8.7 11 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1 75 c2qr3A_ not modelled 8.7 18 PDB header:transcription Chain: A: PDB Molecule:two-component system response regulator; PDBTitle: crystal structure of the n-terminal signal receiver domain of two-2 component system response regulator from bacteroides fragilis 76 d2pl1a1 not modelled 8.7 15 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 77 d1zh2a1 not modelled 8.4 17 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 78 c2ep5B_ not modelled 8.4 13 PDB header:oxidoreductase Chain: B: PDB Molecule:350aa long hypothetical aspartate-semialdehyde PDBTitle: structural study of project id st1242 from sulfolobus tokodaii strain7 79 c2zwmA_ not modelled 8.2 10 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein yycf; PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis 80 d2a9pa1 not modelled 8.2 10 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 81 c2f7cA_ not modelled 8.0 8 PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator catm; PDBTitle: catm effector binding domain with its effector cis,cis-muconate 82 c3muqB_ not modelled 7.9 8 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved functionally unknown protein from2 vibrio parahaemolyticus rimd 2210633 83 d2czla1 not modelled 7.8 8 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 84 c2jrlA_ not modelled 7.8 15 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer 85 c3c97A_ not modelled 7.5 2 PDB header:signaling protein, transferase Chain: A: PDB Molecule:signal transduction histidine kinase; PDBTitle: crystal structure of the response regulator receiver domain2 of a signal transduction histidine kinase from aspergillus3 oryzae 86 d1mb3a_ not modelled 7.4 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 87 c1ny5A_ not modelled 7.2 10 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state 88 c2nt3A_ not modelled 7.2 20 PDB header:signaling protein Chain: A: PDB Molecule:response regulator homolog; PDBTitle: receiver domain from myxococcus xanthus social motility protein frzs2 (y102a mutant) 89 c2zayA_ not modelled 7.2 6 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans 90 c3tmgA_ not modelled 7.0 7 PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi 91 c3kn3C_ not modelled 6.8 2 PDB header:transcription Chain: C: PDB Molecule:putative periplasmic protein; PDBTitle: crystal structure of lysr substrate binding domain (25-263) of2 putative periplasmic protein from wolinella succinogenes 92 c2v25B_ not modelled 6.6 5 PDB header:receptor Chain: B: PDB Molecule:major cell-binding factor; PDBTitle: structure of the campylobacter jejuni antigen peb1a, an2 aspartate and glutamate receptor with bound aspartate 93 c1w25B_ not modelled 6.4 12 PDB header:signaling protein Chain: B: PDB Molecule:stalked-cell differentiation controlling protein; PDBTitle: response regulator pled in complex with c-digmp 94 c3gxaA_ not modelled 6.4 9 PDB header:protein binding Chain: A: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of gna1946 95 d1k66a_ not modelled 6.4 8 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 96 c2qsjB_ not modelled 6.4 8 PDB header:transcription Chain: B: PDB Molecule:dna-binding response regulator, luxr family; PDBTitle: crystal structure of a luxr family dna-binding response2 regulator from silicibacter pomeroyi 97 c3cfyA_ not modelled 6.3 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative luxo repressor protein; PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus 98 c3snkA_ not modelled 6.2 8 PDB header:signaling protein Chain: A: PDB Molecule:response regulator chey-like protein; PDBTitle: crystal structure of a response regulator chey-like protein (mll6475)2 from mesorhizobium loti at 2.02 a resolution 99 c3ktoA_ not modelled 6.1 8 PDB header:transcription regulator Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver protein2 from pseudoalteromonas atlantica

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0