Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	R	I	K	I	N	A	R	R	I	F	S	L	L	I	P	F	F	F	F	T	S	V	H	A	E	Q	T	A	A	P	A	K	P	V	T	V	E	A	K	N	E	T	F	A	P	Q	H	P	D	Q	Y	L	S	W	K	A	T	S
Secondary structure
SS confidence
Disorder		?	?																							?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	Q	S	E	R	V	D	A	L	A	E	D	P	R	L	V	I	L	W	A	G	Y	P	F	S	R	D	Y	N	K	P	R	G	H	A	F	A	V	T	D	V	R	E	T	L	R	T	G	A	P	K	N	A	E	D	G	P	L	P	M
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?		?	?																																						?		?	?	?	?	?	?	?	?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	C	W	S	C	K	S	P	D	V	A	R	L	I	Q	K	D	G	E	D	G	Y	F	H	G	K	W	A	R	G	G	P	E	I	V	N	N	L	G	C	A	D	C	H	N	T	A	S	P	E	F	A	K	G	K	P	E	L	T	L
Secondary structure
SS confidence
Disorder																				?	?	?	?	?			?				?	?	?	?													?			?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	R	P	Y	A	A	R	A	M	E	A	I	G	K	P	F	E	K	A	G	R	F	D	Q	Q	S	M	V	C	G	Q	C	H	V	E	Y	Y	F	D	G	K	N	K	A	V	K	F	P	W	D	D	G	M	K	V	E	N	M	E	Q
Secondary structure
SS confidence
Disorder								?				?							?	?	?	?	?	?	?	?	?														?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		Y	Y	D	K	I	A	F	S	D	W	T	N	S	L	S	K	T	P	M	L	K	A	Q	H	P	E	Y	E	T	W	T	A	G	I	H	G	K	N	N	V	T	C	I	D	C	H	M	P	K	V	Q	N	A	E	G	K	L	Y	T	D
Secondary structure
SS confidence
Disorder																			?												?	?	?		?																?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		H	K	I	G	N	P	F	D	N	F	A	Q	T	C	A	N	C	H	T	Q	D	K	A	A	L	Q	K	V	V	A	E	R	K	Q	S	I	N	D	L	K	I	K	V	E	D	Q	L	V	H	A	H	F	E	A	K	A	A	L	D	A
Secondary structure
SS confidence
Disorder						?	?	?														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		G	A	T	E	A	E	M	K	P	I	Q	D	D	I	R	H	A	Q	W	R	W	D	L	A	I	A	S	H	G	I	H	M	H	A	P	E	E	G	L	R	M	L	G	T	A	M	D	K	A	A	D	A	R	T	K	L	A	R	L	L
Secondary structure
SS confidence
Disorder																																		?																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Sequence		A	T	K	G	I	T	H	E	I	Q	I	P	D	I	S	T	K	E	K	A	Q	Q	A	I	G	L	N	M	E	Q	I	K	A	E	K	Q	D	F	I	K	T	V	I	P	Q	W	E	E	Q	A	R	K	N	G	L	L	S	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?		?			?								?		?		?	?	?					?		?		?																	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1qdb chain A Region: 39 - 478 Aligned: 431 Modelled: 440 Confidence: 100.0% Identity: 47% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 2rdz chain A domain 1 Region: 38 - 477 Aligned: 440 Modelled: 440 Confidence: 100.0% Identity: 100% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 2j7a chain E Region: 22 - 476 Aligned: 444 Modelled: 455 Confidence: 100.0% Identity: 32% PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris Phyre2 PDB 1fs9 chain A Region: 33 - 477 Aligned: 436 Modelled: 445 Confidence: 100.0% Identity: 48% PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex Phyre2 PDB 2vr0 chain A Region: 22 - 476 Aligned: 444 Modelled: 455 Confidence: 100.0% Identity: 32% PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor Phyre2 PDB 1fs7 chain A Region: 33 - 477 Aligned: 436 Modelled: 438 Confidence: 100.0% Identity: 48% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1oah chain A Region: 33 - 475 Aligned: 423 Modelled: 443 Confidence: 100.0% Identity: 32% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1oah chain A Region: 33 - 475 Aligned: 423 Modelled: 443 Confidence: 100.0% Identity: 32% PDB header:reductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa). Phyre2 PDB 3f29 chain A Region: 49 - 423 Aligned: 365 Modelled: 375 Confidence: 100.0% Identity: 26% PDB header:oxidoreductase Chain: A: PDB Molecule:eight-heme nitrite reductase; PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite Phyre2 PDB 1fgj chain A Region: 121 - 417 Aligned: 280 Modelled: 280 Confidence: 99.6% Identity: 16% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1fgj chain A Region: 121 - 417 Aligned: 280 Modelled: 280 Confidence: 99.6% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:hydroxylamine oxidoreductase; PDBTitle: x-ray structure of hydroxylamine oxidoreductase Phyre2 PDB 1ft5 chain A Region: 83 - 286 Aligned: 175 Modelled: 175 Confidence: 98.1% Identity: 18% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 2p0b chain A Region: 159 - 318 Aligned: 120 Modelled: 140 Confidence: 98.0% Identity: 18% PDB header:electron transport Chain: A: PDB Molecule:cytochrome c-type protein nrfb; PDBTitle: crystal structure of chemically-reduced e.coli nrfb Phyre2 PDB 1sp3 chain A Region: 120 - 321 Aligned: 139 Modelled: 154 Confidence: 98.0% Identity: 22% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1y0p chain A domain 1 Region: 157 - 319 Aligned: 77 Modelled: 85 Confidence: 97.8% Identity: 34% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 3oue chain A Region: 158 - 321 Aligned: 116 Modelled: 121 Confidence: 97.7% Identity: 21% PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of c-terminal hexaheme fragment of gsu1996 Phyre2 PDB 3ouq chain A Region: 119 - 320 Aligned: 130 Modelled: 144 Confidence: 97.6% Identity: 15% PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of n-terminal hexaheme fragment of gsu1996 Phyre2 PDB 3ov0 chain A Region: 109 - 321 Aligned: 207 Modelled: 213 Confidence: 97.4% Identity: 18% PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of dodecaheme cytochrome c gsu1996 Phyre2 PDB 1qo8 chain A domain 1 Region: 159 - 319 Aligned: 71 Modelled: 71 Confidence: 97.1% Identity: 28% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1d4c chain A domain 1 Region: 159 - 319 Aligned: 76 Modelled: 83 Confidence: 96.9% Identity: 29% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 1 d1qdba_ 2 d2rdza1 3 c2j7aE_ 4 c1fs9A_ 5 c2vr0A_ 6 d1fs7a_ 7 d1oaha_ 8 c1oahA_ 9 c3f29A_ 10 d1fgja_ 11 c1fgjA_ 12 d1ft5a_ 13 c2p0bA_ 14 d1sp3a_ 15 d1y0pa1 16 c3oueA_ 17 c3ouqA_ 18 c3ov0A_ 19 d1qo8a1 20 d1d4ca1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1qdba_ 100.0 47 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 2 d2rdza1 100.0 100 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 3 c2j7aE_ 100.0 32 PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris 4 c1fs9A_ 100.0 48 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex 5 c2vr0A_ 100.0 32 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor 6 d1fs7a_ 100.0 48 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 7 d1oaha_ 100.0 32 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 8 c1oahA_ 100.0 32 PDB header:reductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa). 9 c3f29A_ 100.0 26 PDB header:oxidoreductase Chain: A: PDB Molecule:eight-heme nitrite reductase; PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite 10 d1fgja_ 99.6 16 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 11 c1fgjA_ 99.6 16 PDB header:oxidoreductase Chain: A: PDB Molecule:hydroxylamine oxidoreductase; PDBTitle: x-ray structure of hydroxylamine oxidoreductase 12 d1ft5a_ 98.1 18 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 13 c2p0bA_ 98.0 18 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c-type protein nrfb; PDBTitle: crystal structure of chemically-reduced e.coli nrfb 14 d1sp3a_ 98.0 22 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 15 d1y0pa1 97.8 34 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 16 c3oueA_ 97.7 21 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of c-terminal hexaheme fragment of gsu1996 17 c3ouqA_ 97.6 15 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of n-terminal hexaheme fragment of gsu1996 18 c3ov0A_ 97.4 18 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of dodecaheme cytochrome c gsu1996 19 d1qo8a1 97.1 28 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 20 d1d4ca1 96.9 29 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 21 c2j7aC_ not modelled 96.8 18 PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris 22 d1m1qa_ not modelled 96.8 26 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 23 d1aqea_ not modelled 96.8 26 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 24 c3pmqA_ not modelled 96.5 18 PDB header:electron transport Chain: A: PDB Molecule:decaheme cytochrome c mtrf; PDBTitle: crystal structure of the outer membrane decaheme cytochrome mtrf 25 d1duwa_ not modelled 96.4 15 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 26 c2e84A_ not modelled 96.3 20 PDB header:electron transport Chain: A: PDB Molecule:high-molecular-weight cytochrome c; PDBTitle: crystal structure of high-molecular weight cytochrome c2 from desulfovibrio vulgaris (miyazaki f) in the presence3 of zinc ion 27 c2k3vA_ not modelled 96.3 38 PDB header:electron transport Chain: A: PDB Molecule:tetraheme cytochrome c-type; PDBTitle: solution structure of a tetrahaem cytochrome from2 shewanella frigidimarina 28 c1eysC_ not modelled 95.9 16 PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center; PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum 29 d1eysc_ not modelled 95.9 16 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Photosynthetic reaction centre (cytochrome subunit) 30 d1ogyb_ not modelled 95.9 17 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 31 d1ofwa_ not modelled 95.8 15 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 32 c2bq4A_ not modelled 95.6 25 PDB header:electron transport Chain: A: PDB Molecule:basic cytochrome c3; PDBTitle: crystal structure of type i cytochrome c3 from2 desulfovibrio africanus 33 c2jblC_ not modelled 95.2 17 PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center cytochrome c PDBTitle: photosynthetic reaction center from blastochloris viridis 34 d2i5nc1 not modelled 95.2 17 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Photosynthetic reaction centre (cytochrome subunit) 35 c1z1nX_ not modelled 95.2 18 PDB header:electron transport Chain: X: PDB Molecule:sixteen heme cytochrome; PDBTitle: crystal structure of the sixteen heme cytochrome from desulfovibrio2 gigas 36 d19hca_ not modelled 95.2 13 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 37 d2cvca1 not modelled 95.1 20 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 38 c2cvcA_ not modelled 94.5 19 PDB header:electron transport Chain: A: PDB Molecule:high-molecular-weight cytochrome c precursor; PDBTitle: crystal structure of high-molecular weight cytochrome c2 from desulfovibrio vulgaris (hildenborough) 39 c3o5aB_ not modelled 93.0 25 PDB header:oxidoreductase Chain: B: PDB Molecule:diheme cytochrome c napb; PDBTitle: crystal structure of partially reduced periplasmic nitrate reductase2 from cupriavidus necator using ionic liquids 40 d1j0pa_ not modelled 92.3 27 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 41 d1i77a_ not modelled 92.0 22 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 42 d1jnia_ not modelled 91.8 29 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 43 c1jniA_ not modelled 91.8 29 PDB header:oxidoreductase Chain: A: PDB Molecule:diheme cytochrome c napb; PDBTitle: structure of the napb subunit of the periplasmic nitrate2 reductase from haemophilus influenzae. 44 c2a3mA_ not modelled 91.5 16 PDB header:electron transport Chain: A: PDB Molecule:cog3005: nitrate/tmao reductases, membrane-bound tetraheme PDBTitle: structure of desulfovibrio desulfuricans g20 tetraheme cytochrome2 (oxidized form) 45 d1gyoa_ not modelled 89.5 20 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 46 d1wada_ not modelled 89.2 16 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 47 c2c1dC_ not modelled 88.6 25 PDB header:oxidoreductase Chain: C: PDB Molecule:soxa; PDBTitle: crystal structure of soxxa from p. pantotrophus 48 c1qo8A_ not modelled 88.5 22 PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase; PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase 49 d2ctha_ not modelled 88.2 17 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 50 c3h4nB_ not modelled 88.0 26 PDB header:electron transport Chain: B: PDB Molecule:cytochrome c7; PDBTitle: ppcd, a cytochrome c7 from geobacter sulfurreducens 51 c1h32A_ not modelled 87.5 28 PDB header:electron transfer Chain: A: PDB Molecule:diheme cytochrome c; PDBTitle: reduced soxax complex from rhodovulum sulfidophilum 52 d1up9a_ not modelled 84.9 22 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 53 d2cy3a_ not modelled 84.4 15 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 54 c3h34A_ not modelled 81.8 20 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c7; PDBTitle: ppce, a cytochrome c7 from geobacter sulfurreducens 55 c1pbyA_ not modelled 81.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein amine dehydrogenase 60 kda PDBTitle: structure of the phenylhydrazine adduct of the2 quinohemoprotein amine dehydrogenase from paracoccus3 denitrificans at 1.7 a resolution 56 c1jmxA_ not modelled 80.3 24 PDB header:oxidoreductase Chain: A: PDB Molecule:amine dehydrogenase; PDBTitle: crystal structure of a quinohemoprotein amine dehydrogenase2 from pseudomonas putida 57 d3caoa_ not modelled 80.0 18 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 58 c3h33A_ not modelled 79.5 14 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c7; PDBTitle: ppcc, a cytochrome c7 from geobacter sulfurreducens 59 d1nmla1 not modelled 74.7 10 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 60 c1jrxA_ not modelled 74.5 16 PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c; PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina 61 d1rwja_ not modelled 73.6 17 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 62 d1os6a_ not modelled 70.6 21 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 63 d1eb7a1 not modelled 68.8 13 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 64 c2c1uB_ not modelled 63.2 25 PDB header:oxidoreductase Chain: B: PDB Molecule:di-haem cytochrome c peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from paracoccus pantotrophus - oxidised form 65 c1nmlA_ not modelled 62.9 21 PDB header:oxidoreductase Chain: A: PDB Molecule:di-haem cytochrome c peroxidase; PDBTitle: di-haemic cytochrome c peroxidase from pseudomonas nautica 617, form2 in (ph 4.0) 66 c3o5cA_ not modelled 62.7 25 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: cytochrome c peroxidase bccp of shewanella oneidensis 67 c3l4oB_ not modelled 62.6 13 PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:methylamine utilization protein maug; PDBTitle: crystal structure of the maug/pre-methylamine dehydrogenase complex2 after treatment with hydrogen peroxide 68 c1d4cB_ not modelled 62.6 23 PDB header:oxidoreductase Chain: B: PDB Molecule:flavocytochrome c fumarate reductase; PDBTitle: crystal structure of the uncomplexed form of the2 flavocytochrome c fumarate reductase of shewanella3 putrefaciens strain mr-1 69 d1iqca1 not modelled 62.3 13 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 70 c3oa8A_ not modelled 62.0 21 PDB header:heme-binding protein/heme-binding protei Chain: A: PDB Molecule:soxa; PDBTitle: diheme soxax 71 c1iqcB_ not modelled 58.2 24 PDB header:oxidoreductase Chain: B: PDB Molecule:di-heme peroxidase; PDBTitle: crystal structure of di-heme peroxidase from nitrosomonas europaea 72 d1h21a_ not modelled 55.0 38 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 73 c1zzhA_ not modelled 54.4 30 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c peroxidase; PDBTitle: structure of the fully oxidized di-heme cytochrome c2 peroxidase from r. capsulatus 74 d1hh5a_ not modelled 52.7 20 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 75 d1h32a2 not modelled 51.7 33 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c SoxA 76 d1h32a1 not modelled 51.0 42 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c SoxA 77 d1wejf_ not modelled 50.0 35 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 78 d1co6a_ not modelled 48.2 32 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 79 d1lfma_ not modelled 47.7 35 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 80 d1pbya1 not modelled 47.2 16 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 81 c2vhdB_ not modelled 46.7 17 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from pseudomonas aeruginosa - mixed valence form 82 d1yeba_ not modelled 46.0 30 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 83 d1j3sa_ not modelled 46.0 30 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 84 d1ytca_ not modelled 45.2 30 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 85 d3c2ca_ not modelled 45.1 32 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 86 c3hq7A_ not modelled 45.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: ccpa from g. sulfurreducens, g94k/k97q/r100i variant 87 d1jdla_ not modelled 44.2 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 88 c1w2lA_ not modelled 44.2 22 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome oxidase subunit ii; PDBTitle: cytochrome c domain of caa3 oxygen oxidoreductase 89 d1ycca_ not modelled 43.6 30 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 90 d1ccra_ not modelled 43.2 35 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 91 d1ynra1 not modelled 41.6 40 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 92 d351ca_ not modelled 40.0 40 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 93 c2zxyA_ not modelled 39.6 40 PDB header:oxygen binding, transport protein Chain: A: PDB Molecule:cytochrome c552; PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus 94 c2d0sA_ not modelled 39.6 40 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus 95 d1lmsa_ not modelled 39.3 32 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 96 c3b42B_ not modelled 38.9 16 PDB header:signaling protein Chain: B: PDB Molecule:methyl-accepting chemotaxis protein, putative; PDBTitle: periplasmic sensor domain of chemotaxis protein gsu0935 97 d1m70a2 not modelled 38.0 23 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 98 d1fcdc1 not modelled 36.9 18 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 99 d1nmla2 not modelled 36.8 26 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 100 c3oa8B_ not modelled 36.5 25 PDB header:heme-binding protein/heme-binding protei Chain: B: PDB Molecule:soxx; PDBTitle: diheme soxax 101 d1jmxa1 not modelled 35.9 14 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 102 d1h1oa2 not modelled 35.5 13 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 103 c2yiuE_ not modelled 34.9 29 PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c1, heme protein; PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution 104 d1fi3a_ not modelled 34.8 40 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 105 d1a56a_ not modelled 34.8 30 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 106 c2fynH_ not modelled 34.6 29 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c1; PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 107 d1c53a_ not modelled 34.2 30 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 108 d1cora_ not modelled 33.6 40 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 109 c2bpbB_ not modelled 33.2 15 PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella 110 c3mk7B_ not modelled 32.3 36 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit o; PDBTitle: the structure of cbb3 cytochrome oxidase 111 c1m70D_ not modelled 31.9 32 PDB header:electron transport Chain: D: PDB Molecule:cytochrome c4; PDBTitle: crystal structure of oxidized recombinant cytochrome c4 from2 pseudomonas stutzeri 112 c3o0rC_ not modelled 31.6 17 PDB header:immune system/oxidoreductase Chain: C: PDB Molecule:nitric oxide reductase subunit c; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment 113 d1dvva_ not modelled 31.5 40 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 114 d1pbya2 not modelled 29.6 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 115 d1gu2a_ not modelled 29.4 21 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 116 d1m70a1 not modelled 28.9 32 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 117 d1iqca2 not modelled 28.8 21 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 118 d1kb0a1 not modelled 28.0 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinoprotein alcohol dehydrogenase, C-terminal domain 119 c2w9kA_ not modelled 27.6 26 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crithidia fasciculata cytochrome c 120 d1dw0a_ not modelled 27.6 23 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0