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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c3ov0A_ | PDB header: electron transport | Chain: A: PDB Molecule: cytochrome c family protein; | PDBTitle: structure of dodecaheme cytochrome c gsu1996 |
Added to library: Wed Jan 5 12:17:19 2011 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | K | E | T | K | N | V | P | F | K | L | K | N | A | A | P | V | I | F | S | H | D | I | H | L | K | K | Y | N | N | N | C | R | I | C | H | I | A | L | F | D | L | R | K | P | K | R | Y | T | M | L | D | M | E | K | G | K | S | C | G | A | C | H | T | G | M | K | A | F | S | V |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | ![]() | T | T | S | ![]() | ![]() | ![]() | T | T | T | T | T | T | T | T | T | S | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | S | S | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | S | G | G | G | G | T | S | S | S | S | S | S |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Sequence | A | D | D | S | Q | C | V | R | C | H | S | G | S | A | R | P | V | A | Y | R | M | K | G | A | G | E | A | V | F | S | H | E | V | H | V | P | M | L | E | G | K | C | R | T | C | H | S | N | R | E | I | T | G | G | R | N | V | T | M | A | Q | M | E | K | G | K | S | C | G | A |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | S | S | T | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | G | G | G | T | S | T | T | T | S | S | T | ![]() | ![]() | ![]() | ![]() | T | T | T | T | S | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | S | T | T | T | T |   | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
Sequence | C | H | N | D | K | M | A | F | T | V | A | G | N | C | G | K | C | H | K | G | M | T | P | P | K | T | V | N | F | K | M | K | G | V | A | D | A | A | F | S | H | E | F | H | L | G | M | Y | K | C | N | E | C | H | T | K | L | F | A | Y | K | A | G | A | K | R | F | T | M | A |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | B | T | T | S | S | B | S | S | S | ![]() | ![]() | ![]() | ![]() | B | S | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | S | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | G | G | G | S | T | T | T | S | S | S | S | S | ![]() | ![]() |   | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 |
Sequence | D | M | D | K | G | K | S | C | G | A | C | H | N | G | K | D | A | F | S | S | A | S | D | C | G | K | C | H | P | G | L | K | P | A | K | L | T | Y | K | T | S | V | G | E | A | Y | F | D | H | D | I | H | L | S | M | F | K | C | A | D | C | H | T | K | V | F | K | Y | R | K |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | T | T | T | G | G | G | G | T | B | T | T | T | S | B | S | S | S | S | T | T | T | T | S | S | S | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | T | T | T | T | S | T | T | T | S | S | S | S |   | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . |
Sequence | G | S | A | P | A | T | M | A | D | M | E | K | G | K | S | C | G | V | C | H | N | G | K | D | A | F | S | V | A | D | D | C | V | K | C | H | N | M | ||||||||||||||||||||||||||||||||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | ![]() | ![]() | ![]() | ![]() | T | G | G | G | G | T | S | S | S | S | S | S | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() |
Download: | PDB structure | FASTA sequence |
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