Phyre 2 Results for P0ABK9

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Email | l.a.kelley@imperial.ac.uk
Description | P0ABK9
Date | Thu Jan 5 11:15:44 GMT 2012
Unique Job ID | 54bd71ffca13f846

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1qdba_
Top template information
Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
Confidence and coverage
Confidence: | 100.0% | Coverage: | 90%
431 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | T | R | I | K | I | N | A | R | R | I | F | S | L | L | I | P | F | F | F | F | T | S | V | H | A | E | Q | T | A | A | P | A | K | P | V | T | V | E | A | K | N | E | T | F | A | P | Q | H | P | D | Q | Y | L | S | W | K | A | T | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | E | Q | S | E | R | V | D | A | L | A | E | D | P | R | L | V | I | L | W | A | G | Y | P | F | S | R | D | Y | N | K | P | R | G | H | A | F | A | V | T | D | V | R | E | T | L | R | T | G | A | P | K | N | A | E | D | G | P | L | P | M
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | A | C | W | S | C | K | S | P | D | V | A | R | L | I | Q | K | D | G | E | D | G | Y | F | H | G | K | W | A | R | G | G | P | E | I | V | N | N | L | G | C | A | D | C | H | N | T | A | S | P | E | F | A | K | G | K | P | E | L | T | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  | ? |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | S | R | P | Y | A | A | R | A | M | E | A | I | G | K | P | F | E | K | A | G | R | F | D | Q | Q | S | M | V | C | G | Q | C | H | V | E | Y | Y | F | D | G | K | N | K | A | V | K | F | P | W | D | D | G | M | K | V | E | N | M | E | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  | ? |  |  |  | ? |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | Y | Y | D | K | I | A | F | S | D | W | T | N | S | L | S | K | T | P | M | L | K | A | Q | H | P | E | Y | E | T | W | T | A | G | I | H | G | K | N | N | V | T | C | I | D | C | H | M | P | K | V | Q | N | A | E | G | K | L | Y | T | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | H | K | I | G | N | P | F | D | N | F | A | Q | T | C | A | N | C | H | T | Q | D | K | A | A | L | Q | K | V | V | A | E | R | K | Q | S | I | N | D | L | K | I | K | V | E | D | Q | L | V | H | A | H | F | E | A | K | A | A | L | D | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | G | A | T | E | A | E | M | K | P | I | Q | D | D | I | R | H | A | Q | W | R | W | D | L | A | I | A | S | H | G | I | H | M | H | A | P | E | E | G | L | R | M | L | G | T | A | M | D | K | A | A | D | A | R | T | K | L | A | R | L | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | .
Sequence |  | A | T | K | G | I | T | H | E | I | Q | I | P | D | I | S | T | K | E | K | A | Q | Q | A | I | G | L | N | M | E | Q | I | K | A | E | K | Q | D | F | I | K | T | V | I | P | Q | W | E | E | Q | A | R | K | N | G | L | L | S | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? |  | ? |  |  | ? |  |  |  |  |  |  |  | ? |  | ? |  | ? | ? | ? |  |  |  |  | ? |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1qdba_ |

### PDB 1qdb chain A

Region: 39 - 478
Aligned: 431
Modelled: 440
Confidence: 100.0%
Identity: 47%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
2 |
| d2rdza1 |

### PDB 2rdz chain A domain 1

Region: 38 - 477
Aligned: 440
Modelled: 440
Confidence: 100.0%
Identity: 100%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
3 |
| c2j7aE_ |

### PDB 2j7a chain E

Region: 22 - 476
Aligned: 444
Modelled: 455
Confidence: 100.0%
Identity: 32%
PDB header:oxidoreductase
Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa;
PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris

Phyre2
4 |
| c1fs9A_ |

### PDB 1fs9 chain A

Region: 33 - 477
Aligned: 436
Modelled: 445
Confidence: 100.0%
Identity: 48%
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c nitrite reductase;
PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex

Phyre2
5 |
| c2vr0A_ |

### PDB 2vr0 chain A

Region: 22 - 476
Aligned: 444
Modelled: 455
Confidence: 100.0%
Identity: 32%
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra;
PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor

Phyre2
6 |
| d1fs7a_ |

### PDB 1fs7 chain A

Region: 33 - 477
Aligned: 436
Modelled: 438
Confidence: 100.0%
Identity: 48%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
7 |
| d1oaha_ |

### PDB 1oah chain A

Region: 33 - 475
Aligned: 423
Modelled: 443
Confidence: 100.0%
Identity: 32%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
8 |
| c1oahA_ |

### PDB 1oah chain A

Region: 33 - 475
Aligned: 423
Modelled: 443
Confidence: 100.0%
Identity: 32%
PDB header:reductase
Chain: A: PDB Molecule:cytochrome c nitrite reductase;
PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa).

Phyre2
9 |
| c3f29A_ |

### PDB 3f29 chain A

Region: 49 - 423
Aligned: 365
Modelled: 375
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: A: PDB Molecule:eight-heme nitrite reductase;
PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite

Phyre2
10 |
| d1fgja_ |

### PDB 1fgj chain A

Region: 121 - 417
Aligned: 280
Modelled: 280
Confidence: 99.6%
Identity: 16%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
11 |
| c1fgjA_ |

### PDB 1fgj chain A

Region: 121 - 417
Aligned: 280
Modelled: 280
Confidence: 99.6%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxylamine oxidoreductase;
PDBTitle: x-ray structure of hydroxylamine oxidoreductase

Phyre2
12 |
| d1ft5a_ |

### PDB 1ft5 chain A

Region: 83 - 286
Aligned: 175
Modelled: 175
Confidence: 98.1%
Identity: 18%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
13 |
| c2p0bA_ |

### PDB 2p0b chain A

Region: 159 - 318
Aligned: 120
Modelled: 140
Confidence: 98.0%
Identity: 18%
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c-type protein nrfb;
PDBTitle: crystal structure of chemically-reduced e.coli nrfb

Phyre2
14 |
| d1sp3a_ |

### PDB 1sp3 chain A

Region: 120 - 321
Aligned: 139
Modelled: 154
Confidence: 98.0%
Identity: 22%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
15 |
| d1y0pa1 |

### PDB 1y0p chain A domain 1

Region: 157 - 319
Aligned: 77
Modelled: 85
Confidence: 97.8%
Identity: 34%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
16 |
| c3oueA_ |

### PDB 3oue chain A

Region: 158 - 321
Aligned: 116
Modelled: 121
Confidence: 97.7%
Identity: 21%
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: structure of c-terminal hexaheme fragment of gsu1996

Phyre2
17 |
| c3ouqA_ |

### PDB 3ouq chain A

Region: 119 - 320
Aligned: 130
Modelled: 144
Confidence: 97.6%
Identity: 15%
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: structure of n-terminal hexaheme fragment of gsu1996

Phyre2
18 |
| c3ov0A_ |

### PDB 3ov0 chain A

Region: 109 - 321
Aligned: 207
Modelled: 213
Confidence: 97.4%
Identity: 18%
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: structure of dodecaheme cytochrome c gsu1996

Phyre2
19 |
| d1qo8a1 |

### PDB 1qo8 chain A domain 1

Region: 159 - 319
Aligned: 71
Modelled: 71
Confidence: 97.1%
Identity: 28%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
20 |
| d1d4ca1 |

### PDB 1d4c chain A domain 1

Region: 159 - 319
Aligned: 76
Modelled: 83
Confidence: 96.9%
Identity: 29%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1qdba_ |
|  | 100.0 | 47 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
2 | d2rdza1 |
|  | 100.0 | 100 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
3 | c2j7aE_ |
|  | 100.0 | 32 | PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris
4 | c1fs9A_ |
|  | 100.0 | 48 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex
5 | c2vr0A_ |
|  | 100.0 | 32 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor
6 | d1fs7a_ |
|  | 100.0 | 48 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
7 | d1oaha_ |
|  | 100.0 | 32 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
8 | c1oahA_ |
|  | 100.0 | 32 | PDB header:reductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa).
9 | c3f29A_ |
|  | 100.0 | 26 | PDB header:oxidoreductase Chain: A: PDB Molecule:eight-heme nitrite reductase; PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite
10 | d1fgja_ |
|  | 99.6 | 16 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
11 | c1fgjA_ |
|  | 99.6 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:hydroxylamine oxidoreductase; PDBTitle: x-ray structure of hydroxylamine oxidoreductase
12 | d1ft5a_ |
|  | 98.1 | 18 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
13 | c2p0bA_ |
|  | 98.0 | 18 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c-type protein nrfb; PDBTitle: crystal structure of chemically-reduced e.coli nrfb
14 | d1sp3a_ |
|  | 98.0 | 22 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
15 | d1y0pa1 |
|  | 97.8 | 34 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
16 | c3oueA_ |
|  | 97.7 | 21 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of c-terminal hexaheme fragment of gsu1996
17 | c3ouqA_ |
|  | 97.6 | 15 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of n-terminal hexaheme fragment of gsu1996
18 | c3ov0A_ |
|  | 97.4 | 18 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of dodecaheme cytochrome c gsu1996
19 | d1qo8a1 |
|  | 97.1 | 28 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
20 | d1d4ca1 |
|  | 96.9 | 29 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
21 | c2j7aC_ |
| not modelled | 96.8 | 18 | PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris
22 | d1m1qa_ |
| not modelled | 96.8 | 26 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
23 | d1aqea_ |
| not modelled | 96.8 | 26 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
24 | c3pmqA_ |
| not modelled | 96.5 | 18 | PDB header:electron transport Chain: A: PDB Molecule:decaheme cytochrome c mtrf; PDBTitle: crystal structure of the outer membrane decaheme cytochrome mtrf
25 | d1duwa_ |
| not modelled | 96.4 | 15 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
26 | c2e84A_ |
| not modelled | 96.3 | 20 | PDB header:electron transport Chain: A: PDB Molecule:high-molecular-weight cytochrome c; PDBTitle: crystal structure of high-molecular weight cytochrome c2 from desulfovibrio vulgaris (miyazaki f) in the presence3 of zinc ion
27 | c2k3vA_ |
| not modelled | 96.3 | 38 | PDB header:electron transport Chain: A: PDB Molecule:tetraheme cytochrome c-type; PDBTitle: solution structure of a tetrahaem cytochrome from2 shewanella frigidimarina
28 | c1eysC_ |
| not modelled | 95.9 | 16 | PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center; PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum
29 | d1eysc_ |
| not modelled | 95.9 | 16 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Photosynthetic reaction centre (cytochrome subunit)
30 | d1ogyb_ |
| not modelled | 95.9 | 17 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
31 | d1ofwa_ |
| not modelled | 95.8 | 15 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
32 | c2bq4A_ |
| not modelled | 95.6 | 25 | PDB header:electron transport Chain: A: PDB Molecule:basic cytochrome c3; PDBTitle: crystal structure of type i cytochrome c3 from2 desulfovibrio africanus
33 | c2jblC_ |
| not modelled | 95.2 | 17 | PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center cytochrome c PDBTitle: photosynthetic reaction center from blastochloris viridis
34 | d2i5nc1 |
| not modelled | 95.2 | 17 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Photosynthetic reaction centre (cytochrome subunit)
35 | c1z1nX_ |
| not modelled | 95.2 | 18 | PDB header:electron transport Chain: X: PDB Molecule:sixteen heme cytochrome; PDBTitle: crystal structure of the sixteen heme cytochrome from desulfovibrio2 gigas
36 | d19hca_ |
| not modelled | 95.2 | 13 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
37 | d2cvca1 |
| not modelled | 95.1 | 20 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
38 | c2cvcA_ |
| not modelled | 94.5 | 19 | PDB header:electron transport Chain: A: PDB Molecule:high-molecular-weight cytochrome c precursor; PDBTitle: crystal structure of high-molecular weight cytochrome c2 from desulfovibrio vulgaris (hildenborough)
39 | c3o5aB_ |
| not modelled | 93.0 | 25 | PDB header:oxidoreductase Chain: B: PDB Molecule:diheme cytochrome c napb; PDBTitle: crystal structure of partially reduced periplasmic nitrate reductase2 from cupriavidus necator using ionic liquids
40 | d1j0pa_ |
| not modelled | 92.3 | 27 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
41 | d1i77a_ |
| not modelled | 92.0 | 22 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
42 | d1jnia_ |
| not modelled | 91.8 | 29 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
43 | c1jniA_ |
| not modelled | 91.8 | 29 | PDB header:oxidoreductase Chain: A: PDB Molecule:diheme cytochrome c napb; PDBTitle: structure of the napb subunit of the periplasmic nitrate2 reductase from haemophilus influenzae.
44 | c2a3mA_ |
| not modelled | 91.5 | 16 | PDB header:electron transport Chain: A: PDB Molecule:cog3005: nitrate/tmao reductases, membrane-bound tetraheme PDBTitle: structure of desulfovibrio desulfuricans g20 tetraheme cytochrome2 (oxidized form)
45 | d1gyoa_ |
| not modelled | 89.5 | 20 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
46 | d1wada_ |
| not modelled | 89.2 | 16 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
47 | c2c1dC_ |
| not modelled | 88.6 | 25 | PDB header:oxidoreductase Chain: C: PDB Molecule:soxa; PDBTitle: crystal structure of soxxa from p. pantotrophus
48 | c1qo8A_ |
| not modelled | 88.5 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase; PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase
49 | d2ctha_ |
| not modelled | 88.2 | 17 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
50 | c3h4nB_ |
| not modelled | 88.0 | 26 | PDB header:electron transport Chain: B: PDB Molecule:cytochrome c7; PDBTitle: ppcd, a cytochrome c7 from geobacter sulfurreducens
51 | c1h32A_ |
| not modelled | 87.5 | 28 | PDB header:electron transfer Chain: A: PDB Molecule:diheme cytochrome c; PDBTitle: reduced soxax complex from rhodovulum sulfidophilum
52 | d1up9a_ |
| not modelled | 84.9 | 22 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
53 | d2cy3a_ |
| not modelled | 84.4 | 15 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
54 | c3h34A_ |
| not modelled | 81.8 | 20 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c7; PDBTitle: ppce, a cytochrome c7 from geobacter sulfurreducens
55 | c1pbyA_ |
| not modelled | 81.0 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein amine dehydrogenase 60 kda PDBTitle: structure of the phenylhydrazine adduct of the2 quinohemoprotein amine dehydrogenase from paracoccus3 denitrificans at 1.7 a resolution
56 | c1jmxA_ |
| not modelled | 80.3 | 24 | PDB header:oxidoreductase Chain: A: PDB Molecule:amine dehydrogenase; PDBTitle: crystal structure of a quinohemoprotein amine dehydrogenase2 from pseudomonas putida
57 | d3caoa_ |
| not modelled | 80.0 | 18 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
58 | c3h33A_ |
| not modelled | 79.5 | 14 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c7; PDBTitle: ppcc, a cytochrome c7 from geobacter sulfurreducens
59 | d1nmla1 |
| not modelled | 74.7 | 10 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase
60 | c1jrxA_ |
| not modelled | 74.5 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c; PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina
61 | d1rwja_ |
| not modelled | 73.6 | 17 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
62 | d1os6a_ |
| not modelled | 70.6 | 21 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
63 | d1eb7a1 |
| not modelled | 68.8 | 13 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase
64 | c2c1uB_ |
| not modelled | 63.2 | 25 | PDB header:oxidoreductase Chain: B: PDB Molecule:di-haem cytochrome c peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from paracoccus pantotrophus - oxidised form
65 | c1nmlA_ |
| not modelled | 62.9 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:di-haem cytochrome c peroxidase; PDBTitle: di-haemic cytochrome c peroxidase from pseudomonas nautica 617, form2 in (ph 4.0)
66 | c3o5cA_ |
| not modelled | 62.7 | 25 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: cytochrome c peroxidase bccp of shewanella oneidensis
67 | c3l4oB_ |
| not modelled | 62.6 | 13 | PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:methylamine utilization protein maug; PDBTitle: crystal structure of the maug/pre-methylamine dehydrogenase complex2 after treatment with hydrogen peroxide
68 | c1d4cB_ |
| not modelled | 62.6 | 23 | PDB header:oxidoreductase Chain: B: PDB Molecule:flavocytochrome c fumarate reductase; PDBTitle: crystal structure of the uncomplexed form of the2 flavocytochrome c fumarate reductase of shewanella3 putrefaciens strain mr-1
69 | d1iqca1 |
| not modelled | 62.3 | 13 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase
70 | c3oa8A_ |
| not modelled | 62.0 | 21 | PDB header:heme-binding protein/heme-binding protei Chain: A: PDB Molecule:soxa; PDBTitle: diheme soxax
71 | c1iqcB_ |
| not modelled | 58.2 | 24 | PDB header:oxidoreductase Chain: B: PDB Molecule:di-heme peroxidase; PDBTitle: crystal structure of di-heme peroxidase from nitrosomonas europaea
72 | d1h21a_ |
| not modelled | 55.0 | 38 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
73 | c1zzhA_ |
| not modelled | 54.4 | 30 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c peroxidase; PDBTitle: structure of the fully oxidized di-heme cytochrome c2 peroxidase from r. capsulatus
74 | d1hh5a_ |
| not modelled | 52.7 | 20 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
75 | d1h32a2 |
| not modelled | 51.7 | 33 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c SoxA
76 | d1h32a1 |
| not modelled | 51.0 | 42 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c SoxA
77 | d1wejf_ |
| not modelled | 50.0 | 35 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
78 | d1co6a_ |
| not modelled | 48.2 | 32 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
79 | d1lfma_ |
| not modelled | 47.7 | 35 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
80 | d1pbya1 |
| not modelled | 47.2 | 16 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
81 | c2vhdB_ |
| not modelled | 46.7 | 17 | PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from pseudomonas aeruginosa - mixed valence form
82 | d1yeba_ |
| not modelled | 46.0 | 30 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
83 | d1j3sa_ |
| not modelled | 46.0 | 30 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
84 | d1ytca_ |
| not modelled | 45.2 | 30 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
85 | d3c2ca_ |
| not modelled | 45.1 | 32 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
86 | c3hq7A_ |
| not modelled | 45.0 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: ccpa from g. sulfurreducens, g94k/k97q/r100i variant
87 | d1jdla_ |
| not modelled | 44.2 | 25 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
88 | c1w2lA_ |
| not modelled | 44.2 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome oxidase subunit ii; PDBTitle: cytochrome c domain of caa3 oxygen oxidoreductase
89 | d1ycca_ |
| not modelled | 43.6 | 30 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
90 | d1ccra_ |
| not modelled | 43.2 | 35 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
91 | d1ynra1 |
| not modelled | 41.6 | 40 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
92 | d351ca_ |
| not modelled | 40.0 | 40 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
93 | c2zxyA_ |
| not modelled | 39.6 | 40 | PDB header:oxygen binding, transport protein Chain: A: PDB Molecule:cytochrome c552; PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus
94 | c2d0sA_ |
| not modelled | 39.6 | 40 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus
95 | d1lmsa_ |
| not modelled | 39.3 | 32 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
96 | c3b42B_ |
| not modelled | 38.9 | 16 | PDB header:signaling protein Chain: B: PDB Molecule:methyl-accepting chemotaxis protein, putative; PDBTitle: periplasmic sensor domain of chemotaxis protein gsu0935
97 | d1m70a2 |
| not modelled | 38.0 | 23 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c
98 | d1fcdc1 |
| not modelled | 36.9 | 18 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c
99 | d1nmla2 |
| not modelled | 36.8 | 26 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase
100 | c3oa8B_ |
| not modelled | 36.5 | 25 | PDB header:heme-binding protein/heme-binding protei Chain: B: PDB Molecule:soxx; PDBTitle: diheme soxax
101 | d1jmxa1 |
| not modelled | 35.9 | 14 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
102 | d1h1oa2 |
| not modelled | 35.5 | 13 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c
103 | c2yiuE_ |
| not modelled | 34.9 | 29 | PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c1, heme protein; PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution
104 | d1fi3a_ |
| not modelled | 34.8 | 40 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
105 | d1a56a_ |
| not modelled | 34.8 | 30 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
106 | c2fynH_ |
| not modelled | 34.6 | 29 | PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c1; PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
107 | d1c53a_ |
| not modelled | 34.2 | 30 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
108 | d1cora_ |
| not modelled | 33.6 | 40 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
109 | c2bpbB_ |
| not modelled | 33.2 | 15 | PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella
110 | c3mk7B_ |
| not modelled | 32.3 | 36 | PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit o; PDBTitle: the structure of cbb3 cytochrome oxidase
111 | c1m70D_ |
| not modelled | 31.9 | 32 | PDB header:electron transport Chain: D: PDB Molecule:cytochrome c4; PDBTitle: crystal structure of oxidized recombinant cytochrome c4 from2 pseudomonas stutzeri
112 | c3o0rC_ |
| not modelled | 31.6 | 17 | PDB header:immune system/oxidoreductase Chain: C: PDB Molecule:nitric oxide reductase subunit c; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment
113 | d1dvva_ |
| not modelled | 31.5 | 40 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
114 | d1pbya2 |
| not modelled | 29.6 | 22 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
115 | d1gu2a_ |
| not modelled | 29.4 | 21 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
116 | d1m70a1 |
| not modelled | 28.9 | 32 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c
117 | d1iqca2 |
| not modelled | 28.8 | 21 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase
118 | d1kb0a1 |
| not modelled | 28.0 | 25 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinoprotein alcohol dehydrogenase, C-terminal domain
119 | c2w9kA_ |
| not modelled | 27.6 | 26 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crithidia fasciculata cytochrome c
120 | d1dw0a_ |
| not modelled | 27.6 | 23 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0