12/01/2012 05:35:24 : INFO  : Run start: Thu Jan 12 05:35:23 GMT 2012
12/01/2012 05:35:29 : INFO  : Initialised job
12/01/2012 05:35:31 : INFO  : Renaming log file 'phyre2_20120112_053522.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/54bd71ffca13f846/phyre_20120112_053522.log'
12/01/2012 05:35:32 : INFO  : Initialised job:
Sequence
>batch____
MTRIKINARRIFSLLIPFFFFTSVHAEQTAAPAKPVTVEAKNETFAPQHPDQYLSWKATS
EQSERVDALAEDPRLVILWAGYPFSRDYNKPRGHAFAVTDVRETLRTGAPKNAEDGPLPM
ACWSCKSPDVARLIQKDGEDGYFHGKWARGGPEIVNNLGCADCHNTASPEFAKGKPELTL
SRPYAARAMEAIGKPFEKAGRFDQQSMVCGQCHVEYYFDGKNKAVKFPWDDGMKVENMEQ
YYDKIAFSDWTNSLSKTPMLKAQHPEYETWTAGIHGKNNVTCIDCHMPKVQNAEGKLYTD
HKIGNPFDNFAQTCANCHTQDKAALQKVVAERKQSINDLKIKVEDQLVHAHFEAKAALDA
GATEAEMKPIQDDIRHAQWRWDLAIASHGIHMHAPEEGLRMLGTAMDKAADARTKLARLL
ATKGITHEIQIPDISTKEKAQQAIGLNMEQIKAEKQDFIKTVIPQWEEQARKNGLLSQ

12/01/2012 05:35:33 : INFO  : Checked sequence
12/01/2012 05:35:36 : INFO  : Finding homologues with PSI-BLAST
12/01/2012 05:35:37 : INFO  : PSI-BLAST 3 iterations
12/01/2012 05:37:28 : INFO  : PSI-BLAST 5 iterations
12/01/2012 05:39:43 : INFO  : Finished PSI-BLAST
12/01/2012 05:39:45 : INFO  : Running Buildali to generate a3m file
12/01/2012 05:46:42 : INFO  : Converting to HMM
12/01/2012 05:46:45 : INFO  : Calibrating HMM
12/01/2012 05:47:02 : INFO  : Searching HMM database
12/01/2012 05:55:04 : INFO  : Finished buildali
12/01/2012 05:55:06 : INFO  : Predicting secondary structure
12/01/2012 05:55:14 : INFO  : Predicted secondary structure (PSI-Pred)
12/01/2012 05:55:16 : INFO  : Predicting Disordered regions
12/01/2012 05:55:20 : INFO  : Predicted Disorder (Disopred)
12/01/2012 05:55:22 : INFO  : Running memsat_svm check
12/01/2012 05:55:40 : INFO  : Globular protein
12/01/2012 05:55:41 : INFO  : Predicted Transmembrane (memsat_svm) ID '54bd71ffca13f846'
12/01/2012 05:55:42 : INFO  : Initialising fold library search
12/01/2012 05:55:46 : INFO  : Initialised search input
12/01/2012 05:55:48 : INFO  : Building Ensemble models
12/01/2012 05:55:51 : INFO  : Building hh.d2rdza1.model.1.pdb
12/01/2012 05:56:07 : INFO  : Building d1qdba_.1.pdb
12/01/2012 05:56:23 : INFO  : Building d2rdza1.2.pdb
12/01/2012 05:56:39 : INFO  : Building c2j7aE_.3.pdb
12/01/2012 05:56:54 : INFO  : Building c1fs9A_.4.pdb
12/01/2012 05:57:09 : INFO  : Building c2vr0A_.5.pdb
12/01/2012 05:57:22 : INFO  : Building d1fs7a_.6.pdb
12/01/2012 05:57:34 : INFO  : Building d1oaha_.7.pdb
12/01/2012 05:57:46 : INFO  : Building c1oahA_.8.pdb
12/01/2012 05:57:58 : INFO  : Building c3f29A_.9.pdb
12/01/2012 05:58:10 : INFO  : Building d1fgja_.10.pdb
12/01/2012 05:58:23 : INFO  : Building c1fgjA_.11.pdb
12/01/2012 05:58:35 : INFO  : Building d1ft5a_.12.pdb
12/01/2012 05:58:47 : INFO  : Building c2p0bA_.13.pdb
12/01/2012 05:58:59 : INFO  : Building d1sp3a_.14.pdb
12/01/2012 05:59:12 : INFO  : Building d1y0pa1.15.pdb
12/01/2012 05:59:24 : INFO  : Building c3oueA_.16.pdb
12/01/2012 05:59:36 : INFO  : Building c3ouqA_.17.pdb
12/01/2012 05:59:48 : INFO  : Building c3ov0A_.18.pdb
12/01/2012 06:00:00 : INFO  : Building d1qo8a1.19.pdb
12/01/2012 06:00:13 : INFO  : Building d1d4ca1.20.pdb
12/01/2012 06:00:48 : INFO  : Finished HH model building
12/01/2012 06:00:49 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
12/01/2012 06:01:41 : INFO  : html domain output complete ID '54bd71ffca13f846'
12/01/2012 07:29:19 : INFO  : Run end  : Thu Jan 12 07:29:18 GMT 2012
