Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	K	Y	N	E	K	E	L	A	D	T	S	K	F	L	S	F	V	L	R	H	K	P	E	A	I	G	I	V	L	D	R	E	G	W	A	D	I	D	K	L	I	L	C	A	Q	K	A	G	K	R	L	T	R	A	L	L	D	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																																										?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	V	A	T	S	D	K	K	R	F	S	Y	S	S	D	G	R	C	I	R	A	V	Q	G	H	S	T	S	Q	V	A	I	S	F	A	E	K	T	P	P	Q	F	L	Y	H	G	T	A	S	R	F	L	D	E	I	K	K	Q	G	L
Secondary structure
SS confidence
Disorder							?	?	?	?																			?	?		?	?	?	?	?	?	?																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	A	G	E	R	H	Y	V	H	L	S	A	D	E	A	T	A	R	K	V	G	A	R	H	G	S	P	V	I	L	T	V	K	A	Q	E	M	A	K	R	G	L	P	F	W	Q	A	E	N	G	V	W	L	T	S	T	V	A	V	E
Secondary structure
SS confidence
Disorder				?												?	?	?	?
Disorder confidence
		.	.	.	.
Sequence		F	L	E	W
Secondary structure
SS confidence
Disorder				?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1wfx chain A Region: 10 - 183 Aligned: 171 Modelled: 174 Confidence: 100.0% Identity: 33% Fold: ADP-ribosylation Superfamily: ADP-ribosylation Family: Tpt1/KptA Phyre2 PDB 2cqk chain A domain 1 Region: 31 - 87 Aligned: 55 Modelled: 57 Confidence: 96.2% Identity: 13% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: La domain Phyre2 PDB 1s29 chain A Region: 29 - 80 Aligned: 50 Modelled: 51 Confidence: 96.2% Identity: 20% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: La domain Phyre2 PDB 1zh5 chain A domain 1 Region: 31 - 80 Aligned: 50 Modelled: 50 Confidence: 95.2% Identity: 18% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: La domain Phyre2 PDB 2pax chain A Region: 102 - 159 Aligned: 48 Modelled: 58 Confidence: 89.2% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:poly(adp-ribose) polymerase; PDBTitle: the catalytic fragment of poly(adp-ribose) polymerase2 complexed with 4-amino-1,8-naphthalimide Phyre2 PDB 1gs0 chain B Region: 102 - 159 Aligned: 48 Modelled: 58 Confidence: 87.5% Identity: 23% PDB header:transferase Chain: B: PDB Molecule:poly (adp-ribose) polymerase-2; PDBTitle: crystal structure of the catalytic fragment of murine poly2 (adp-ribose) polymerase-2 Phyre2 PDB 1gs0 chain A domain 2 Region: 102 - 159 Aligned: 48 Modelled: 58 Confidence: 86.5% Identity: 23% Fold: ADP-ribosylation Superfamily: ADP-ribosylation Family: Poly(ADP-ribose) polymerase, C-terminal domain Phyre2 PDB 3c4h chain A Region: 102 - 121 Aligned: 20 Modelled: 20 Confidence: 84.6% Identity: 35% PDB header:transferase Chain: A: PDB Molecule:poly(adp-ribose) polymerase 3; PDBTitle: human poly(adp-ribose) polymerase 3, catalytic fragment in complex2 with an inhibitor dr2313 Phyre2 PDB 2x5y chain A Region: 102 - 159 Aligned: 46 Modelled: 58 Confidence: 81.4% Identity: 15% PDB header:immune system Chain: A: PDB Molecule:zinc finger ccch-type antiviral protein 1; PDBTitle: human zc3hav1 (artd13), c-terminal domain Phyre2 PDB 3q6n chain F Region: 108 - 184 Aligned: 65 Modelled: 77 Confidence: 80.4% Identity: 15% PDB header:chaperone Chain: F: PDB Molecule:heat shock protein hsp 90-alpha; PDBTitle: crystal structure of human mc-hsp90 in p21 space group Phyre2 PDB 1efy chain A domain 2 Region: 102 - 159 Aligned: 48 Modelled: 58 Confidence: 78.8% Identity: 23% Fold: ADP-ribosylation Superfamily: ADP-ribosylation Family: Poly(ADP-ribose) polymerase, C-terminal domain Phyre2 PDB 2vop chain A Region: 32 - 106 Aligned: 75 Modelled: 75 Confidence: 78.7% Identity: 15% PDB header:rna-binding protein Chain: A: PDB Molecule:lupus la protein; PDBTitle: crystal structure of n-terminal domains of human la protein2 complexed with rna oligomer auuuu Phyre2 PDB 3goy chain D Region: 102 - 123 Aligned: 22 Modelled: 22 Confidence: 74.6% Identity: 23% PDB header:transferase Chain: D: PDB Molecule:poly [adp-ribose] polymerase 14; PDBTitle: crystal structure of human poly(adp-ribose) polymerase 14,2 catalytic fragment in complex with an inhibitor 3-3 aminobenzamide Phyre2 PDB 2rd6 chain A domain 2 Region: 102 - 159 Aligned: 48 Modelled: 58 Confidence: 74.4% Identity: 23% Fold: ADP-ribosylation Superfamily: ADP-ribosylation Family: Poly(ADP-ribose) polymerase, C-terminal domain Phyre2 PDB 3blj chain A Region: 102 - 159 Aligned: 41 Modelled: 41 Confidence: 73.0% Identity: 32% PDB header:transferase Chain: A: PDB Molecule:poly(adp-ribose) polymerase 15; PDBTitle: crystal structure of human poly(adp-ribose) polymerase 15, catalytic2 fragment Phyre2 PDB 2pqf chain F Region: 102 - 123 Aligned: 22 Modelled: 22 Confidence: 71.3% Identity: 36% PDB header:transferase Chain: F: PDB Molecule:poly [adp-ribose] polymerase 12; PDBTitle: human poly(adp-ribose) polymerase 12, catalytic fragment in complex2 with an inhibitor 3-aminobenzoic acid Phyre2 PDB 3pry chain A Region: 127 - 184 Aligned: 48 Modelled: 56 Confidence: 66.9% Identity: 17% PDB header:chaperone Chain: A: PDB Molecule:heat shock protein hsp 90-beta; PDBTitle: crystal structure of the middle domain of human hsp90-beta refined at2 2.3 a resolution Phyre2 PDB 3hkv chain A Region: 102 - 123 Aligned: 22 Modelled: 22 Confidence: 63.4% Identity: 32% PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 10; PDBTitle: human poly(adp-ribose) polymerase 10, catalytic fragment in2 complex with an inhibitor 3-aminobenzamide Phyre2 PDB 2o0q chain A domain 1 Region: 102 - 170 Aligned: 67 Modelled: 69 Confidence: 62.9% Identity: 27% Fold: ADP-ribosylation Superfamily: ADP-ribosylation Family: CC0527-like Phyre2 PDB 1y6z chain A Region: 127 - 184 Aligned: 48 Modelled: 56 Confidence: 53.1% Identity: 21% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:heat shock protein, putative; PDBTitle: middle domain of plasmodium falciparum putative heat shock protein2 pf14_0417 Phyre2 1 d1wfxa_ 2 d2cqka1 3 d1s29a_ 4 d1zh5a1 5 c2paxA_ 6 c1gs0B_ 7 d1gs0a2 8 c3c4hA_ 9 c2x5yA_ 10 c3q6nF_ 11 d1efya2 12 c2vopA_ 13 c3goyD_ 14 d2rd6a2 15 c3bljA_ 16 c2pqfF_ 17 c3pryA_ 18 c3hkvA_ 19 d2o0qa1 20 c1y6zA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1wfxa_ 100.0 33 Fold:ADP-ribosylation Superfamily:ADP-ribosylation Family:Tpt1/KptA 2 d2cqka1 96.2 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:La domain 3 d1s29a_ 96.2 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:La domain 4 d1zh5a1 95.2 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:La domain 5 c2paxA_ 89.2 23 PDB header:transferase Chain: A: PDB Molecule:poly(adp-ribose) polymerase; PDBTitle: the catalytic fragment of poly(adp-ribose) polymerase2 complexed with 4-amino-1,8-naphthalimide 6 c1gs0B_ 87.5 23 PDB header:transferase Chain: B: PDB Molecule:poly (adp-ribose) polymerase-2; PDBTitle: crystal structure of the catalytic fragment of murine poly2 (adp-ribose) polymerase-2 7 d1gs0a2 86.5 23 Fold:ADP-ribosylation Superfamily:ADP-ribosylation Family:Poly(ADP-ribose) polymerase, C-terminal domain 8 c3c4hA_ 84.6 35 PDB header:transferase Chain: A: PDB Molecule:poly(adp-ribose) polymerase 3; PDBTitle: human poly(adp-ribose) polymerase 3, catalytic fragment in complex2 with an inhibitor dr2313 9 c2x5yA_ 81.4 15 PDB header:immune system Chain: A: PDB Molecule:zinc finger ccch-type antiviral protein 1; PDBTitle: human zc3hav1 (artd13), c-terminal domain 10 c3q6nF_ 80.4 15 PDB header:chaperone Chain: F: PDB Molecule:heat shock protein hsp 90-alpha; PDBTitle: crystal structure of human mc-hsp90 in p21 space group 11 d1efya2 78.8 23 Fold:ADP-ribosylation Superfamily:ADP-ribosylation Family:Poly(ADP-ribose) polymerase, C-terminal domain 12 c2vopA_ 78.7 15 PDB header:rna-binding protein Chain: A: PDB Molecule:lupus la protein; PDBTitle: crystal structure of n-terminal domains of human la protein2 complexed with rna oligomer auuuu 13 c3goyD_ 74.6 23 PDB header:transferase Chain: D: PDB Molecule:poly [adp-ribose] polymerase 14; PDBTitle: crystal structure of human poly(adp-ribose) polymerase 14,2 catalytic fragment in complex with an inhibitor 3-3 aminobenzamide 14 d2rd6a2 74.4 23 Fold:ADP-ribosylation Superfamily:ADP-ribosylation Family:Poly(ADP-ribose) polymerase, C-terminal domain 15 c3bljA_ 73.0 32 PDB header:transferase Chain: A: PDB Molecule:poly(adp-ribose) polymerase 15; PDBTitle: crystal structure of human poly(adp-ribose) polymerase 15, catalytic2 fragment 16 c2pqfF_ 71.3 36 PDB header:transferase Chain: F: PDB Molecule:poly [adp-ribose] polymerase 12; PDBTitle: human poly(adp-ribose) polymerase 12, catalytic fragment in complex2 with an inhibitor 3-aminobenzoic acid 17 c3pryA_ 66.9 17 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein hsp 90-beta; PDBTitle: crystal structure of the middle domain of human hsp90-beta refined at2 2.3 a resolution 18 c3hkvA_ 63.4 32 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 10; PDBTitle: human poly(adp-ribose) polymerase 10, catalytic fragment in2 complex with an inhibitor 3-aminobenzamide 19 d2o0qa1 62.9 27 Fold:ADP-ribosylation Superfamily:ADP-ribosylation Family:CC0527-like 20 c1y6zA_ 53.1 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:heat shock protein, putative; PDBTitle: middle domain of plasmodium falciparum putative heat shock protein2 pf14_0417 21 c3mhkA_ not modelled 48.0 26 PDB header:transferase Chain: A: PDB Molecule:tankyrase-2; PDBTitle: human tankyrase 2 - catalytic parp domain in complex with 2-(2-2 pyridyl)-7,8-dihydro-5h-thiino[4,3-d]pyrimidin-4-ol 22 c2d58A_ not modelled 47.1 21 PDB header:metal binding protein Chain: A: PDB Molecule:allograft inflammatory factor 1; PDBTitle: human microglia-specific protein iba1 23 d1n0yb_ not modelled 44.5 21 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 24 c2amiA_ not modelled 42.9 18 PDB header:cell cycle Chain: A: PDB Molecule:caltractin; PDBTitle: solution structure of the calcium-loaded n-terminal sensor2 domain of centrin 25 c2vtgA_ not modelled 40.4 18 PDB header:metal-binding protein Chain: A: PDB Molecule:ionized calcium-binding adapter molecule 2; PDBTitle: crystal structure of human iba2, trigonal crystal form 26 d1wrka1 not modelled 40.3 16 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 27 c2gq0B_ not modelled 38.8 19 PDB header:chaperone, hydrolase Chain: B: PDB Molecule:chaperone protein htpg; PDBTitle: crystal structure of the middle domain of htpg, the e. coli2 hsp90 28 d1sw8a_ not modelled 38.6 21 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 29 c2kzvA_ not modelled 38.0 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of cv_0373(175-257) protein from2 chromobacterium violaceum, northeast structural genomics consortium3 target cvr118a 30 c2aucC_ not modelled 37.2 14 PDB header:membrane protein Chain: C: PDB Molecule:myosin a tail interacting protein; PDBTitle: structure of the plasmodium mtip-myoa complex, a key component of the2 parasite invasion motor 31 c3hjcA_ not modelled 36.3 15 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein 83-1; PDBTitle: crystal structure of the carboxy-terminal domain of hsp90 from2 leishmania major, lmjf33.0312 32 c1hk7A_ not modelled 35.7 23 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein hsp82; PDBTitle: middle domain of hsp90 33 c2o1uA_ not modelled 35.2 28 PDB header:chaperone Chain: A: PDB Molecule:endoplasmin; PDBTitle: structure of full length grp94 with amp-pnp bound 34 d2fcea1 not modelled 35.2 18 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 35 d1tiza_ not modelled 34.4 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 36 c2g2bA_ not modelled 34.4 21 PDB header:immune system Chain: A: PDB Molecule:allograft inflammatory factor 1; PDBTitle: nmr structure of the human allograft inflammatory factor 1 37 c2cgeD_ not modelled 34.2 20 PDB header:chaperone Chain: D: PDB Molecule:atp-dependent molecular chaperone hsp82; PDBTitle: crystal structure of an hsp90-sba1 closed chaperone complex 38 d1m39a_ not modelled 32.8 24 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 39 c2cg9A_ not modelled 32.8 19 PDB header:chaperone Chain: A: PDB Molecule:atp-dependent molecular chaperone hsp82; PDBTitle: crystal structure of an hsp90-sba1 closed chaperone complex 40 c2fcdA_ not modelled 32.7 19 PDB header:cell cycle Chain: A: PDB Molecule:myosin light chain 1; PDBTitle: solution structure of n-lobe myosin light chain from2 saccharomices cerevisiae 41 d1s6ja_ not modelled 29.7 18 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 42 d1avsa_ not modelled 29.3 21 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 43 c2o1tB_ not modelled 28.9 24 PDB header:chaperone Chain: B: PDB Molecule:endoplasmin; PDBTitle: structure of middle plus c-terminal domains (m+c) of grp94 44 d1usua_ not modelled 28.8 19 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Hsp90 middle domain 45 d1fw4a_ not modelled 28.5 21 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 46 c2o1wB_ not modelled 27.8 28 PDB header:chaperone Chain: B: PDB Molecule:endoplasmin; PDBTitle: structure of n-terminal plus middle domains (n+m) of grp94 47 d1ap4a_ not modelled 27.8 16 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 48 d1jc2a_ not modelled 27.4 21 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 49 c1jc2A_ not modelled 27.4 21 PDB header:structural protein Chain: A: PDB Molecule:troponin c, skeletal muscle; PDBTitle: complex of the c-domain of troponin c with residues 1-40 of2 troponin i 50 d2pq3a1 not modelled 26.6 21 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 51 c2l98A_ not modelled 26.4 24 PDB header:contractile protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: structure of trans-resveratrol in complex with the cardiac regulatory2 protein troponin c 52 c2kdhA_ not modelled 26.4 24 PDB header:structural protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: the solution structure of human cardiac troponin c in2 complex with the green tea polyphenol; (-)-3 epigallocatechin-3-gallate 53 c2k2aA_ not modelled 26.1 16 PDB header:contractile protein Chain: A: PDB Molecule:troponin c; PDBTitle: solution structure of the apo c terminal domain of lethocerus troponin2 c isoform f1 54 d1r2ua_ not modelled 25.2 18 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 55 d1oqpa_ not modelled 25.2 29 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 56 c2jojA_ not modelled 24.6 13 PDB header:cell cycle Chain: A: PDB Molecule:centrin protein; PDBTitle: nmr solution structure of n-terminal domain of euplotes2 octocarinatus centrin 57 c2kn2A_ not modelled 24.0 18 PDB header:metal binding protein Chain: A: PDB Molecule:calmodulin; PDBTitle: solution structure of the c-terminal domain of soybean calmodulin2 isoform 4 fused with the calmodulin-binding domain of ntmkp1 58 d1ikpa2 not modelled 23.2 32 Fold:ADP-ribosylation Superfamily:ADP-ribosylation Family:ADP-ribosylating toxins 59 c1ih0A_ not modelled 22.6 22 PDB header:contractile protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: structure of the c-domain of human cardiac troponin c in2 complex with ca2+ sensitizer emd 57033 60 d1ih0a_ not modelled 22.6 22 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 61 c2k7bA_ not modelled 21.7 18 PDB header:metal binding protein Chain: A: PDB Molecule:calcium-binding protein 1; PDBTitle: nmr structure of mg2+-bound cabp1 n-domain 62 c2a4jA_ not modelled 20.8 24 PDB header:structural protein Chain: A: PDB Molecule:centrin 2; PDBTitle: solution structure of the c-terminal domain (t94-y172) of2 the human centrin 2 in complex with a 17 residues peptide3 (p1-xpc) from xeroderma pigmentosum group c protein 63 d1f54a_ not modelled 20.4 16 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 64 c3li6A_ not modelled 19.9 13 PDB header:metal binding protein Chain: A: PDB Molecule:calcium-binding protein; PDBTitle: crystal structure and trimer-monomer transition of n-terminal domain2 of ehcabp1 from entamoeba histolytica 65 c3li6G_ not modelled 19.9 13 PDB header:metal binding protein Chain: G: PDB Molecule:calcium-binding protein; PDBTitle: crystal structure and trimer-monomer transition of n-terminal domain2 of ehcabp1 from entamoeba histolytica 66 c3li6J_ not modelled 19.9 13 PDB header:metal binding protein Chain: J: PDB Molecule:calcium-binding protein; PDBTitle: crystal structure and trimer-monomer transition of n-terminal domain2 of ehcabp1 from entamoeba histolytica 67 d2cxaa1 not modelled 18.8 13 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:LFTR-like 68 c2cxaA_ not modelled 18.8 13 PDB header:transferase Chain: A: PDB Molecule:leucyl/phenylalanyl-trna-protein transferase; PDBTitle: crystal structure of leucyl/phenylalanyl-trna protein2 transferase from escherichia coli 69 c2rf5A_ not modelled 18.7 19 PDB header:transferase Chain: A: PDB Molecule:tankyrase-1; PDBTitle: crystal structure of human tankyrase 1- catalytic parp domain 70 c1scvA_ not modelled 18.4 21 PDB header:contractile protein, structural protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: nmr structure of the c terminal domain of cardiac troponin2 c bound to the n terminal domain of cardiac troponin i 71 d1fi5a_ not modelled 18.4 21 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 72 c1sbjA_ not modelled 18.4 21 PDB header:contractile protein, structural protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: nmr structure of the mg2+-loaded c terminal domain of2 cardiac troponin c bound to the n terminal domain of3 cardiac troponin i 73 c1fi5A_ not modelled 18.4 21 PDB header:contractile protein Chain: A: PDB Molecule:protein (troponin c); PDBTitle: nmr structure of the c terminal domain of cardiac troponin2 c bound to the n terminal domain of cardiac troponin i. 74 c3rhgA_ not modelled 18.0 11 PDB header:hydrolase Chain: A: PDB Molecule:putative phophotriesterase; PDBTitle: crystal structure of amidohydrolase pmi1525 (target efi-500319) from2 proteus mirabilis hi4320 75 c2kz2A_ not modelled 17.1 21 PDB header:metal binding protein Chain: A: PDB Molecule:calmodulin; PDBTitle: calmodulin, c-terminal domain, f92e mutant 76 d1np8a_ not modelled 15.1 19 Fold:EF Hand-like Superfamily:EF-hand Family:Penta-EF-hand proteins 77 c1ozsA_ not modelled 15.0 21 PDB header:structural protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: c-domain of human cardiac troponin c in complex with the2 inhibitory region of human cardiac troponin i 78 c2k9lA_ not modelled 14.9 17 PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: structure of the core binding domain of sigma54 79 c2ktgA_ not modelled 14.7 18 PDB header:ca-binding protein Chain: A: PDB Molecule:calmodulin, putative; PDBTitle: calmodulin like protein from entamoeba histolytica: solution structure2 and calcium binding properties of a partially folded protein 80 c2iopD_ not modelled 14.2 17 PDB header:chaperone Chain: D: PDB Molecule:chaperone protein htpg; PDBTitle: crystal structure of full-length htpg, the escherichia coli2 hsp90, bound to adp 81 d1n0ya_ not modelled 14.1 21 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 82 d1ctda_ not modelled 13.9 26 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 83 c2b1uA_ not modelled 13.3 24 PDB header:metal binding protein Chain: A: PDB Molecule:calmodulin-like protein 5; PDBTitle: solution structure of calmodulin-like skin protein c2 terminal domain 84 d1zaca_ not modelled 13.3 21 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 85 d1cmga_ not modelled 12.7 22 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 86 c3sibA_ not modelled 12.4 11 PDB header:dna binding protein Chain: A: PDB Molecule:ure3-bp sequence specific dna binding protein; PDBTitle: crystal structure of ure3-binding protein, wild-type 87 c1y4sA_ not modelled 12.2 17 PDB header:chaperone Chain: A: PDB Molecule:chaperone protein htpg; PDBTitle: conformation rearrangement of heat shock protein 90 upon2 adp binding 88 c3li6D_ not modelled 11.9 13 PDB header:metal binding protein Chain: D: PDB Molecule:calcium-binding protein; PDBTitle: crystal structure and trimer-monomer transition of n-terminal domain2 of ehcabp1 from entamoeba histolytica 89 c2k7cA_ not modelled 11.8 13 PDB header:metal binding protein Chain: A: PDB Molecule:calcium-binding protein 1; PDBTitle: nmr structure of mg2+-bound cabp1 c-domain 90 d2fsua1 not modelled 11.2 16 Fold:PLP-dependent transferase-like Superfamily:PhnH-like Family:PhnH-like 91 c2fsuA_ not modelled 11.2 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein phnh; PDBTitle: crystal structure of the phnh protein from escherichia coli 92 c1npqA_ not modelled 11.0 21 PDB header:structural protein Chain: A: PDB Molecule:troponin c; PDBTitle: structure of a rhodamine-labeled n-domain troponin c mutant2 (ca2+ saturated) in complex with skeletal troponin i 115-3 131 93 c3ctnA_ not modelled 11.0 21 PDB header:calcium-binding protein Chain: A: PDB Molecule:troponin c; PDBTitle: structure of calcium-saturated cardiac troponin c, nmr, 302 structures 94 d1q46a1 not modelled 11.0 37 Fold:SAM domain-like Superfamily:eIF2alpha middle domain-like Family:eIF2alpha middle domain-like 95 c1novE_ not modelled 10.4 33 PDB header:virus Chain: E: PDB Molecule:nodamura virus coat proteins; PDBTitle: nodamura virus 96 c3uatA_ not modelled 10.3 13 PDB header:peptide binding protein Chain: A: PDB Molecule:disks large homolog 1; PDBTitle: guanylate kinase domains of the maguk family scaffold proteins as2 specific phospho-protein binding modules 97 d2qtva4 not modelled 9.8 33 Fold:Gelsolin-like Superfamily:C-terminal, gelsolin-like domain of Sec23/24 Family:C-terminal, gelsolin-like domain of Sec23/24 98 d1biaa1 not modelled 9.6 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Biotin repressor-like 99 c1ikqA_ not modelled 9.5 32 PDB header:transferase Chain: A: PDB Molecule:exotoxin a; PDBTitle: pseudomonas aeruginosa exotoxin a, wild type

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0