Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	D	V	L	M	Y	L	F	E	T	Y	I	H	T	E	A	E	L	R	V	D	Q	D	K	L	E	Q	D	L	T	D	A	G	F	E	R	E	D	I	Y	N	A	L	L	W	L	E	K	L	A	D	Y	Q	E	G	L	A	E	P
Secondary structure
SS confidence
Disorder		?	?															?	?	?	?	?	?														?																?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		M	Q	L	A	S	D	P	L	S	M	R	I	Y	T	P	E	E	C	E	R	L	D	A	S	C	R	G	F	L	L	F	L	E	Q	I	Q	V	L	N	L	E	T	R	E	M	V	I	E	R	V	L	A	L	D	N	A	E	F	E	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																														?																	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Sequence		D	D	L	K	W	V	I	L	M	V	L	F	N	I	P	G	C	E	N	A	Y	Q	Q	M	E	E	L	L	F	E	V	N	E	G	M	L	H
Secondary structure
SS confidence
Disorder																																	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1stz chain B Region: 3 - 123 Aligned: 84 Modelled: 88 Confidence: 66.9% Identity: 18% PDB header:transcription Chain: B: PDB Molecule:heat-inducible transcription repressor hrca homolog; PDBTitle: crystal structure of a hypothetical protein at 2.2 a resolution Phyre2 PDB 1oqy chain A domain 1 Region: 21 - 46 Aligned: 26 Modelled: 26 Confidence: 54.4% Identity: 23% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 3d5l chain A Region: 23 - 51 Aligned: 29 Modelled: 29 Confidence: 43.1% Identity: 14% PDB header:signaling protein Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of regulatory protein recx Phyre2 PDB 1ify chain A Region: 21 - 44 Aligned: 24 Modelled: 24 Confidence: 40.1% Identity: 25% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 2dak chain A Region: 17 - 44 Aligned: 27 Modelled: 28 Confidence: 39.9% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the second uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) Phyre2 PDB 3e46 chain A domain 1 Region: 19 - 45 Aligned: 27 Modelled: 27 Confidence: 38.7% Identity: 30% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 3dfg chain A Region: 23 - 51 Aligned: 29 Modelled: 29 Confidence: 36.8% Identity: 24% PDB header:recombination Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of recx: a potent inhibitor protein of2 reca from xanthomonas campestris Phyre2 PDB 2cos chain A domain 1 Region: 23 - 44 Aligned: 22 Modelled: 22 Confidence: 36.7% Identity: 32% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 2fu4 chain B Region: 91 - 123 Aligned: 33 Modelled: 33 Confidence: 32.1% Identity: 21% PDB header:dna binding protein Chain: B: PDB Molecule:ferric uptake regulation protein; PDBTitle: crystal structure of the dna binding domain of e.coli fur (ferric2 uptake regulator) Phyre2 PDB 2cos chain A Region: 23 - 44 Aligned: 22 Modelled: 22 Confidence: 31.8% Identity: 32% PDB header:transferase Chain: A: PDB Molecule:serine/threonine protein kinase lats2; PDBTitle: solution structure of rsgi ruh-038, a uba domain from mouse2 lats2 (large tumor suppressor homolog 2) Phyre2 PDB 2l02 chain B Region: 25 - 47 Aligned: 23 Modelled: 23 Confidence: 28.6% Identity: 17% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375 Phyre2 PDB 2crn chain A Region: 17 - 44 Aligned: 27 Modelled: 28 Confidence: 26.4% Identity: 26% PDB header:immune system Chain: A: PDB Molecule:ubash3a protein; PDBTitle: solution structure of the uba domain of human ubash3a2 protein Phyre2 PDB 1dpu chain A Region: 24 - 51 Aligned: 26 Modelled: 28 Confidence: 26.1% Identity: 19% PDB header:dna binding protein Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain; PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88) Phyre2 PDB 1dpu chain A Region: 24 - 51 Aligned: 26 Modelled: 28 Confidence: 26.1% Identity: 19% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: C-terminal domain of RPA32 Phyre2 PDB 1t95 chain A domain 1 Region: 3 - 36 Aligned: 34 Modelled: 34 Confidence: 25.4% Identity: 12% Fold: RuvA C-terminal domain-like Superfamily: Hypothetical protein AF0491, middle domain Family: Hypothetical protein AF0491, middle domain Phyre2 PDB 2w57 chain A Region: 90 - 123 Aligned: 34 Modelled: 34 Confidence: 22.4% Identity: 12% PDB header:metal transport Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: crystal structure of the vibrio cholerae ferric uptake2 regulator (fur) reveals structural rearrangement of the3 dna-binding domains Phyre2 PDB 2g3q chain A domain 1 Region: 22 - 44 Aligned: 23 Modelled: 23 Confidence: 20.6% Identity: 30% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 1whq chain A Region: 84 - 100 Aligned: 17 Modelled: 17 Confidence: 19.2% Identity: 24% Fold: dsRBD-like Superfamily: dsRNA-binding domain-like Family: Double-stranded RNA-binding domain (dsRBD) Phyre2 PDB 1whc chain A Region: 17 - 44 Aligned: 27 Modelled: 28 Confidence: 19.1% Identity: 30% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 2cpw chain A Region: 18 - 44 Aligned: 26 Modelled: 27 Confidence: 18.6% Identity: 27% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cbl-interacting protein sts-1 variant; PDBTitle: solution structure of rsgi ruh-031, a uba domain from human2 cdna Phyre2 1 c1stzB_ 2 d1oqya1 3 c3d5lA_ 4 d1ifya_ 5 c2dakA_ 6 d3e46a1 7 c3dfgA_ 8 d2cosa1 9 c2fu4B_ 10 c2cosA_ 11 c2l02B_ 12 c2crnA_ 13 c1dpuA_ 14 d1dpua_ 15 d1t95a1 16 c2w57A_ 17 d2g3qa1 18 d1whqa_ 19 d1whca_ 20 c2cpwA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1stzB_ 66.9 18 PDB header:transcription Chain: B: PDB Molecule:heat-inducible transcription repressor hrca homolog; PDBTitle: crystal structure of a hypothetical protein at 2.2 a resolution 2 d1oqya1 54.4 23 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 3 c3d5lA_ 43.1 14 PDB header:signaling protein Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of regulatory protein recx 4 d1ifya_ 40.1 25 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 5 c2dakA_ 39.9 22 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the second uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 6 d3e46a1 38.7 30 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 7 c3dfgA_ 36.8 24 PDB header:recombination Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of recx: a potent inhibitor protein of2 reca from xanthomonas campestris 8 d2cosa1 36.7 32 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 9 c2fu4B_ 32.1 21 PDB header:dna binding protein Chain: B: PDB Molecule:ferric uptake regulation protein; PDBTitle: crystal structure of the dna binding domain of e.coli fur (ferric2 uptake regulator) 10 c2cosA_ 31.8 32 PDB header:transferase Chain: A: PDB Molecule:serine/threonine protein kinase lats2; PDBTitle: solution structure of rsgi ruh-038, a uba domain from mouse2 lats2 (large tumor suppressor homolog 2) 11 c2l02B_ 28.6 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375 12 c2crnA_ 26.4 26 PDB header:immune system Chain: A: PDB Molecule:ubash3a protein; PDBTitle: solution structure of the uba domain of human ubash3a2 protein 13 c1dpuA_ 26.1 19 PDB header:dna binding protein Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain; PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88) 14 d1dpua_ 26.1 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of RPA32 15 d1t95a1 25.4 12 Fold:RuvA C-terminal domain-like Superfamily:Hypothetical protein AF0491, middle domain Family:Hypothetical protein AF0491, middle domain 16 c2w57A_ 22.4 12 PDB header:metal transport Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: crystal structure of the vibrio cholerae ferric uptake2 regulator (fur) reveals structural rearrangement of the3 dna-binding domains 17 d2g3qa1 20.6 30 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 18 d1whqa_ 19.2 24 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 19 d1whca_ 19.1 30 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 20 c2cpwA_ 18.6 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cbl-interacting protein sts-1 variant; PDBTitle: solution structure of rsgi ruh-031, a uba domain from human2 cdna 21 c3l9kZ_ not modelled 18.0 22 PDB header:motor protein Chain: Z: PDB Molecule:dynein intermediate chain, cytosolic; PDBTitle: insights into dynein assembly from a dynein intermediate chain-light2 chain roadblock structure 22 c3kevA_ not modelled 17.6 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:galieria sulfuraria dcun1 domain-containing protein; PDBTitle: x-ray crystal structure of a dcun1 domain-containing protein from2 galdieria sulfuraria 23 d1wiva_ not modelled 17.0 27 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 24 c1fuiB_ not modelled 16.5 17 PDB header:isomerase Chain: B: PDB Molecule:l-fucose isomerase; PDBTitle: l-fucose isomerase from escherichia coli 25 d1vega_ not modelled 16.3 27 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 26 c3qqmD_ not modelled 16.2 23 PDB header:transferase Chain: D: PDB Molecule:mlr3007 protein; PDBTitle: crystal structure of a putative amino-acid aminotransferase2 (np_104211.1) from mesorhizobium loti at 2.30 a resolution 27 c3a1yF_ not modelled 15.5 21 PDB header:ribosomal protein Chain: F: PDB Molecule:50s ribosomal protein p1 (l12p); PDBTitle: the structure of protein complex 28 c3e3vA_ not modelled 15.0 17 PDB header:recombination Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of recx from lactobacillus salivarius 29 d1r4wa_ not modelled 13.8 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 30 d1veka_ not modelled 13.3 19 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 31 c3eyyA_ not modelled 13.3 21 PDB header:transport Chain: A: PDB Molecule:putative iron uptake regulatory protein; PDBTitle: structural basis for the specialization of nur, a nickel-2 specific fur homologue, in metal sensing and dna3 recognition 32 c2wbmA_ not modelled 12.8 12 PDB header:rna-binding protein Chain: A: PDB Molecule:ribosome maturation protein sdo1 homolog; PDBTitle: crystal structure of mthsbds, the homologue of the2 shwachman-bodian-diamond syndrome protein in the3 euriarchaeon methanothermobacter thermautotrophicus 33 c1qzeA_ not modelled 12.4 13 PDB header:replication Chain: A: PDB Molecule:uv excision repair protein rad23 homolog a; PDBTitle: hhr23a protein structure based on residual dipolar coupling2 data 34 d2cpwa1 not modelled 12.3 27 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 35 c2dagA_ not modelled 12.1 22 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 36 c2do6A_ not modelled 11.8 28 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna 37 c3itcA_ not modelled 11.8 13 PDB header:hydrolase Chain: A: PDB Molecule:renal dipeptidase; PDBTitle: crystal structure of sco3058 with bound citrate and glycerol 38 d2fi0a1 not modelled 11.7 31 Fold:SP0561-like Superfamily:SP0561-like Family:SP0561-like 39 d1dhsa_ not modelled 11.3 13 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Deoxyhypusine synthase, DHS 40 c3fpnB_ not modelled 11.2 23 PDB header:dna binding protein Chain: B: PDB Molecule:geobacillus stearothermophilus uvrb interaction PDBTitle: crystal structure of uvra-uvrb interaction domains 41 c2fe3B_ not modelled 11.0 20 PDB header:dna binding protein Chain: B: PDB Molecule:peroxide operon regulator; PDBTitle: the crystal structure of bacillus subtilis perr-zn reveals a novel2 zn(cys)4 structural redox switch 42 c2jnhA_ not modelled 10.4 28 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of the uba domain from cbl-b 43 d1ntha_ not modelled 10.3 22 Fold:TIM beta/alpha-barrel Superfamily:Monomethylamine methyltransferase MtmB Family:Monomethylamine methyltransferase MtmB 44 c2k2pA_ not modelled 9.9 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183 45 c2is9A_ not modelled 9.8 36 PDB header:transcription Chain: A: PDB Molecule:defective in cullin neddylation protein 1; PDBTitle: structure of yeast dcn-1 46 c2d9sA_ not modelled 9.7 33 PDB header:ligase Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase; PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna 47 d1oqya2 not modelled 9.6 20 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 48 c2v79B_ not modelled 9.6 11 PDB header:dna-binding protein Chain: B: PDB Molecule:dna replication protein dnad; PDBTitle: crystal structure of the n-terminal domain of dnad from2 bacillus subtilis 49 c3dp7B_ not modelled 8.6 26 PDB header:transferase Chain: B: PDB Molecule:sam-dependent methyltransferase; PDBTitle: crystal structure of sam-dependent methyltransferase from bacteroides2 vulgatus atcc 8482 50 c2daiA_ not modelled 8.6 37 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin associated domain containing 1; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin associated domain containing 1 (ubadc1) 51 c3ocjA_ not modelled 8.6 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: the crystal structure of a possilbe exported protein from bordetella2 parapertussis 52 d1jjcb1 not modelled 8.0 23 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Domains B1 and B5 of PheRS-beta, PheT 53 d1daaa_ not modelled 7.9 19 Fold:D-aminoacid aminotransferase-like PLP-dependent enzymes Superfamily:D-aminoacid aminotransferase-like PLP-dependent enzymes Family:D-aminoacid aminotransferase-like PLP-dependent enzymes 54 c3o10D_ not modelled 7.7 18 PDB header:chaperone Chain: D: PDB Molecule:sacsin; PDBTitle: crystal structure of the hepn domain from human sacsin 55 c3nznA_ not modelled 7.5 33 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: the crystal structure of the glutaredoxin from methanosarcina mazei2 go1 56 d1okra_ not modelled 7.3 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 57 c2l01A_ not modelled 7.2 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein bvu3908 from bacteroides vulgatus,2 northeast structural genomics consortium target bvr153 58 c2kdoA_ not modelled 7.1 12 PDB header:rna binding protein Chain: A: PDB Molecule:ribosome maturation protein sbds; PDBTitle: structure of the human shwachman-bodian-diamond syndrome protein, sbds 59 c3gp4B_ not modelled 7.0 9 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, merr family; PDBTitle: crystal structure of putative merr family transcriptional regulator2 from listeria monocytogenes 60 d1t5la1 not modelled 6.9 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 61 d1sb6a_ not modelled 6.8 24 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 62 d1jb0f_ not modelled 6.6 22 Fold:Single transmembrane helix Superfamily:Subunit III of photosystem I reaction centre, PsaF Family:Subunit III of photosystem I reaction centre, PsaF 63 d2eyqa4 not modelled 6.3 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 64 c3hjhA_ not modelled 6.3 24 PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair-coupling factor; PDBTitle: a rigid n-terminal clamp restrains the motor domains of the bacterial2 transcription-repair coupling factor 65 c2e75H_ not modelled 6.2 57 PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus 66 c2e74H_ not modelled 6.2 57 PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8; PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus 67 c2e76H_ not modelled 6.2 57 PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 68 c3lulA_ not modelled 6.1 13 PDB header:lyase Chain: A: PDB Molecule:4-amino-4-deoxychorismate lyase; PDBTitle: crystal structure of putative 4-amino-4-deoxychorismate lyase.2 (yp_094631.1) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 at 1.78 a resolution 69 d1iyea_ not modelled 5.9 19 Fold:D-aminoacid aminotransferase-like PLP-dependent enzymes Superfamily:D-aminoacid aminotransferase-like PLP-dependent enzymes Family:D-aminoacid aminotransferase-like PLP-dependent enzymes 70 d1efub3 not modelled 5.7 29 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 71 c3c1dA_ not modelled 5.6 19 PDB header:recombination, dna binding protein Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: x-ray crystal structure of recx 72 c2zc2A_ not modelled 5.6 18 PDB header:replication Chain: A: PDB Molecule:dnad-like replication protein; PDBTitle: crystal structure of dnad-like replication protein from2 streptococcus mutans ua159, gi 24377835, residues 127-199 73 d1w6ka1 not modelled 5.5 22 Fold:alpha/alpha toroid Superfamily:Terpenoid cyclases/Protein prenyltransferases Family:Terpene synthases 74 c2abjG_ not modelled 5.4 20 PDB header:transferase Chain: G: PDB Molecule:branched-chain-amino-acid aminotransferase, cytosolic; PDBTitle: crystal structure of human branched chain amino acid transaminase in a2 complex with an inhibitor, c16h10n2o4f3scl, and pyridoxal 5'3 phosphate. 75 c1t95A_ not modelled 5.4 12 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein af0491; PDBTitle: crystal structure of the shwachman-bodian-diamond syndrome2 protein orthologue from archaeoglobus fulgidus 76 d2b2na1 not modelled 5.4 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 77 d1m2ia_ not modelled 5.3 33 Fold:Cytochrome b5-like heme/steroid binding domain Superfamily:Cytochrome b5-like heme/steroid binding domain Family:Cytochrome b5 78 c3itfA_ not modelled 5.3 21 PDB header:signaling protein Chain: A: PDB Molecule:periplasmic adaptor protein cpxp; PDBTitle: structural basis for the inhibitory function of the cpxp adaptor2 protein

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0