Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	E	R	L	S	I	T	P	L	G	P	Y	I	G	A	Q	I	S	G	A	D	L	T	R	P	L	S	D	N	Q	F	E	Q	L	Y	H	A	V	L	R	H	Q	V	V	F	L	R	D	Q	A	I	T	P	Q	Q	Q	R	A	L
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	Q	R	F	G	E	L	H	I	H	P	V	Y	P	H	A	E	G	V	D	E	I	I	V	L	D	T	H	N	D	N	P	P	D	N	D	N	W	H	T	D	V	T	F	I	E	T	P	P	A	G	A	I	L	A	A	K	E	L	P
Secondary structure
SS confidence
Disorder																													?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	T	G	G	D	T	L	W	T	S	G	I	A	A	Y	E	A	L	S	V	P	F	R	Q	L	L	S	G	L	R	A	E	H	D	F	R	K	S	F	P	E	Y	K	Y	R	K	T	E	E	E	H	Q	R	W	R	E	A	V	A	K
Secondary structure
SS confidence
Disorder																																											?		?	?	?			?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		N	P	P	L	L	H	P	V	V	R	T	H	P	V	S	G	K	Q	A	L	F	V	N	E	G	F	T	T	R	I	V	D	V	S	E	K	E	S	E	A	L	L	S	F	L	F	A	H	I	T	K	P	E	F	Q	V	R	W	R	W
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Sequence		Q	P	N	D	I	A	I	W	D	N	R	V	T	Q	H	Y	A	N	A	D	Y	L	P	Q	R	R	I	M	H	R	A	T	I	L	G	D	K	P	F	Y	R	A	G
Secondary structure
SS confidence
Disorder																																								?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1otj chain A Region: 2 - 282 Aligned: 281 Modelled: 281 Confidence: 100.0% Identity: 100% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: TauD/TfdA-like Phyre2 PDB 3pvj chain B Region: 4 - 279 Aligned: 276 Modelled: 276 Confidence: 100.0% Identity: 61% PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of the fe(ii)/alpha-ketoglutarate dependent taurine2 dioxygenase from pseudomonas putida kt2440 Phyre2 PDB 1oih chain A Region: 3 - 279 Aligned: 241 Modelled: 253 Confidence: 100.0% Identity: 41% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: TauD/TfdA-like Phyre2 PDB 3r1j chain B Region: 5 - 279 Aligned: 225 Modelled: 226 Confidence: 100.0% Identity: 46% PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of alpha-ketoglutarate-dependent taurine dioxygenase2 from mycobacterium avium, native form Phyre2 PDB 3eat chain X Region: 5 - 279 Aligned: 248 Modelled: 250 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase Chain: X: PDB Molecule:pyoverdine biosynthesis protein pvcb; PDBTitle: crystal structure of the pvcb (pa2255) protein from2 pseudomonas aeruginosa Phyre2 PDB 1nx4 chain A Region: 2 - 275 Aligned: 243 Modelled: 263 Confidence: 100.0% Identity: 18% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: gamma-Butyrobetaine hydroxylase Phyre2 PDB 3ms5 chain A Region: 28 - 273 Aligned: 230 Modelled: 232 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:gamma-butyrobetaine dioxygenase; PDBTitle: crystal structure of human gamma-butyrobetaine,2-oxoglutarate2 dioxygenase 1 (bbox1) Phyre2 PDB 1y0z chain A Region: 29 - 272 Aligned: 241 Modelled: 244 Confidence: 100.0% Identity: 15% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: gamma-Butyrobetaine hydroxylase Phyre2 PDB 1ds1 chain A Region: 30 - 277 Aligned: 226 Modelled: 228 Confidence: 100.0% Identity: 18% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: Clavaminate synthase Phyre2 PDB 2og5 chain A Region: 30 - 282 Aligned: 222 Modelled: 230 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxygenase; PDBTitle: crystal structure of asparagine oxygenase (asno) Phyre2 PDB 1jr7 chain A Region: 27 - 274 Aligned: 221 Modelled: 227 Confidence: 100.0% Identity: 17% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: Gab protein (hypothetical protein YgaT) Phyre2 PDB 2wbq chain A Region: 33 - 276 Aligned: 232 Modelled: 244 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:l-arginine beta-hydroxylase; PDBTitle: crystal structure of vioc in complex with (2s,3s)-2 hydroxyarginine Phyre2 PDB 2opw chain A Region: 25 - 281 Aligned: 178 Modelled: 184 Confidence: 97.9% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:phyhd1 protein; PDBTitle: crystal structure of human phytanoyl-coa dioxygenase phyhd1 (apo) Phyre2 PDB 3nnl chain B Region: 30 - 281 Aligned: 202 Modelled: 213 Confidence: 97.4% Identity: 10% PDB header:biosynthetic protein Chain: B: PDB Molecule:cura; PDBTitle: halogenase domain from cura module (crystal form iii) Phyre2 PDB 2rds chain A Region: 30 - 278 Aligned: 179 Modelled: 193 Confidence: 96.6% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxypentalenic acid 11-beta hydroxylase; fe(ii)/alpha- PDBTitle: crystal structure of ptlh with fe/oxalylglycine and ent-1-2 deoxypentalenic acid bound Phyre2 PDB 2fct chain A domain 1 Region: 33 - 269 Aligned: 184 Modelled: 185 Confidence: 96.5% Identity: 14% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: PhyH-like Phyre2 PDB 3gjb chain A Region: 33 - 274 Aligned: 141 Modelled: 143 Confidence: 96.1% Identity: 13% PDB header:biosynthetic protein Chain: A: PDB Molecule:cytc3; PDBTitle: cytc3 with fe(ii) and alpha-ketoglutarate Phyre2 PDB 3emr chain A Region: 33 - 272 Aligned: 196 Modelled: 196 Confidence: 94.9% Identity: 7% PDB header:oxidoreductase Chain: A: PDB Molecule:ectd; PDBTitle: crystal structure analysis of the ectoine hydroxylase ectd from2 salibacillus salexigens Phyre2 PDB 2a1x chain A domain 1 Region: 231 - 282 Aligned: 51 Modelled: 52 Confidence: 91.7% Identity: 10% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: PhyH-like Phyre2 PDB 1wdi chain A Region: 240 - 257 Aligned: 18 Modelled: 18 Confidence: 85.5% Identity: 11% Fold: QueA-like Superfamily: QueA-like Family: QueA-like Phyre2 1 d1otja_ 2 c3pvjB_ 3 d1oiha_ 4 c3r1jB_ 5 c3eatX_ 6 d1nx4a_ 7 c3ms5A_ 8 d1y0za_ 9 d1ds1a_ 10 c2og5A_ 11 d1jr7a_ 12 c2wbqA_ 13 c2opwA_ 14 c3nnlB_ 15 c2rdsA_ 16 d2fcta1 17 c3gjbA_ 18 c3emrA_ 19 d2a1xa1 20 d1wdia_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1otja_ 100.0 100 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TauD/TfdA-like 2 c3pvjB_ 100.0 61 PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of the fe(ii)/alpha-ketoglutarate dependent taurine2 dioxygenase from pseudomonas putida kt2440 3 d1oiha_ 100.0 41 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TauD/TfdA-like 4 c3r1jB_ 100.0 46 PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of alpha-ketoglutarate-dependent taurine dioxygenase2 from mycobacterium avium, native form 5 c3eatX_ 100.0 23 PDB header:oxidoreductase Chain: X: PDB Molecule:pyoverdine biosynthesis protein pvcb; PDBTitle: crystal structure of the pvcb (pa2255) protein from2 pseudomonas aeruginosa 6 d1nx4a_ 100.0 18 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:gamma-Butyrobetaine hydroxylase 7 c3ms5A_ 100.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:gamma-butyrobetaine dioxygenase; PDBTitle: crystal structure of human gamma-butyrobetaine,2-oxoglutarate2 dioxygenase 1 (bbox1) 8 d1y0za_ 100.0 15 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:gamma-Butyrobetaine hydroxylase 9 d1ds1a_ 100.0 18 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Clavaminate synthase 10 c2og5A_ 100.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxygenase; PDBTitle: crystal structure of asparagine oxygenase (asno) 11 d1jr7a_ 100.0 17 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Gab protein (hypothetical protein YgaT) 12 c2wbqA_ 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:l-arginine beta-hydroxylase; PDBTitle: crystal structure of vioc in complex with (2s,3s)-2 hydroxyarginine 13 c2opwA_ 97.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:phyhd1 protein; PDBTitle: crystal structure of human phytanoyl-coa dioxygenase phyhd1 (apo) 14 c3nnlB_ 97.4 10 PDB header:biosynthetic protein Chain: B: PDB Molecule:cura; PDBTitle: halogenase domain from cura module (crystal form iii) 15 c2rdsA_ 96.6 21 PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxypentalenic acid 11-beta hydroxylase; fe(ii)/alpha- PDBTitle: crystal structure of ptlh with fe/oxalylglycine and ent-1-2 deoxypentalenic acid bound 16 d2fcta1 96.5 14 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:PhyH-like 17 c3gjbA_ 96.1 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:cytc3; PDBTitle: cytc3 with fe(ii) and alpha-ketoglutarate 18 c3emrA_ 94.9 7 PDB header:oxidoreductase Chain: A: PDB Molecule:ectd; PDBTitle: crystal structure analysis of the ectoine hydroxylase ectd from2 salibacillus salexigens 19 d2a1xa1 91.7 10 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:PhyH-like 20 d1wdia_ 85.5 11 Fold:QueA-like Superfamily:QueA-like Family:QueA-like 21 c1yy3A_ not modelled 85.4 11 PDB header:isomerase Chain: A: PDB Molecule:s-adenosylmethionine:trna ribosyltransferase- PDBTitle: structure of s-adenosylmethionine:trna ribosyltransferase-2 isomerase (quea) 22 d1vkya_ not modelled 83.3 11 Fold:QueA-like Superfamily:QueA-like Family:QueA-like 23 c2jijA_ not modelled 63.7 10 PDB header:hydrolase Chain: A: PDB Molecule:prolyl-4 hydroxylase; PDBTitle: crystal structure of the apo form of chlamydomonas2 reinhardtii prolyl-4 hydroxylase type i 24 d1gp6a_ not modelled 59.8 31 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 25 d1dcsa_ not modelled 59.5 8 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 26 c2g19A_ not modelled 58.3 9 PDB header:oxidoreductase Chain: A: PDB Molecule:egl nine homolog 1; PDBTitle: cellular oxygen sensing: crystal structure of hypoxia-2 inducible factor prolyl hydroxylase (phd2) 27 c3pl0B_ not modelled 56.6 21 PDB header:biosynthetic protein Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a bsma homolog (mpe_a2762) from methylobium2 petroleophilum pm1 at 1.91 a resolution 28 d1odma_ not modelled 55.8 14 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 29 c3itqB_ not modelled 51.8 8 PDB header:oxidoreductase Chain: B: PDB Molecule:prolyl 4-hydroxylase, alpha subunit domain protein; PDBTitle: crystal structure of a prolyl 4-hydroxylase from bacillus anthracis 30 c3ouiA_ not modelled 49.7 9 PDB header:oxidoreductase Chain: A: PDB Molecule:egl nine homolog 1; PDBTitle: phd2-r717 with 40787422 31 c3on7C_ not modelled 49.3 7 PDB header:oxidoreductase Chain: C: PDB Molecule:oxidoreductase, iron/ascorbate family; PDBTitle: crystal structure of a putative oxygenase (so_2589) from shewanella2 oneidensis at 2.20 a resolution 32 c2fg0B_ not modelled 47.0 10 PDB header:hydrolase Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion- PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution 33 d2csga1 not modelled 45.8 12 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:YbiU-like 34 d2evra2 not modelled 42.2 9 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:NlpC/P60 35 d1e5ra_ not modelled 40.5 20 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Type II Proline 3-hydroxylase (proline oxidase) 36 c2dbiA_ not modelled 37.7 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ybiu; PDBTitle: crystal structure of a hypothetical protein jw0805 from2 escherichia coli 37 c3gt2A_ not modelled 34.7 18 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c 38 c2xivA_ not modelled 34.2 19 PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis 39 d1w9ya1 not modelled 32.2 13 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 40 c3npfB_ not modelled 30.6 13 PDB header:hydrolase Chain: B: PDB Molecule:putative dipeptidyl-peptidase vi; PDBTitle: crystal structure of a putative dipeptidyl-peptidase vi (bacova_00612)2 from bacteroides ovatus at 1.72 a resolution 41 c3pbiA_ not modelled 28.2 19 PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution 42 c3ghfA_ not modelled 28.1 11 PDB header:cell cycle Chain: A: PDB Molecule:septum site-determining protein minc; PDBTitle: crystal structure of the septum site-determining protein2 minc from salmonella typhimurium 43 d16pka_ not modelled 25.9 20 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 44 d1bvp12 not modelled 25.3 21 Fold:Viral protein domain Superfamily:Viral protein domain Family:Top domain of virus capsid protein 45 c2a5hC_ not modelled 24.9 12 PDB header:isomerase Chain: C: PDB Molecule:l-lysine 2,3-aminomutase; PDBTitle: 2.1 angstrom x-ray crystal structure of lysine-2,3-aminomutase from2 clostridium subterminale sb4, with michaelis analog (l-alpha-lysine3 external aldimine form of pyridoxal-5'-phosphate). 46 c1zmrA_ not modelled 22.7 7 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of the e. coli phosphoglycerate kinase 47 d1hdia_ not modelled 20.9 7 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 48 d1phpa_ not modelled 20.0 14 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 49 d1ltka_ not modelled 19.3 13 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 50 c2nnzA_ not modelled 18.3 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: solution structure of the hypothetical protein af2241 from2 archaeoglobus fulgidus 51 d1fw8a_ not modelled 18.2 14 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 52 d1vpea_ not modelled 18.0 7 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 53 c2w8iG_ not modelled 16.9 31 PDB header:membrane protein Chain: G: PDB Molecule:putative outer membrane lipoprotein wza; PDBTitle: crystal structure of wza24-345. 54 c3dkqB_ not modelled 16.8 8 PDB header:oxidoreductase Chain: B: PDB Molecule:pkhd-type hydroxylase sbal_3634; PDBTitle: crystal structure of putative oxygenase (yp_001051978.1) from2 shewanella baltica os155 at 2.26 a resolution 55 d1v6sa_ not modelled 16.2 14 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 56 c2cunA_ not modelled 16.1 21 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from pyrococcus2 horikoshii ot3 57 d2toda1 not modelled 15.7 8 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 58 c3trrA_ not modelled 15.5 16 PDB header:isomerase Chain: A: PDB Molecule:probable enoyl-coa hydratase/isomerase; PDBTitle: crystal structure of a probable enoyl-coa hydratase/isomerase from2 mycobacterium abscessus 59 c3q3vA_ not modelled 14.9 14 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from campylobacter2 jejuni. 60 d1vjda_ not modelled 14.8 7 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 61 d1qpga_ not modelled 14.6 14 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 62 c3cmwA_ not modelled 14.6 22 PDB header:recombination/dna Chain: A: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures 63 c3h41A_ not modelled 13.8 18 PDB header:hydrolase Chain: A: PDB Molecule:nlp/p60 family protein; PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution 64 c3bvcA_ not modelled 13.7 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ism_01780; PDBTitle: crystal structure of uncharacterized protein ism_01780 from2 roseovarius nubinhibens ism 65 c3cmuA_ not modelled 13.4 22 PDB header:recombination/dna Chain: A: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures 66 c2ej5B_ not modelled 13.3 12 PDB header:lyase Chain: B: PDB Molecule:enoyl-coa hydratase subunit ii; PDBTitle: crystal structure of gk2038 protein (enoyl-coa hydratase subunit ii)2 from geobacillus kaustophilus 67 c3rcqA_ not modelled 13.2 11 PDB header:oxidoreductase Chain: A: PDB Molecule:aspartyl/asparaginyl beta-hydroxylase; PDBTitle: crystal structure of human aspartate beta-hydroxylase isoform a 68 c3r38A_ not modelled 13.1 7 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase 1; PDBTitle: 2.23 angstrom resolution crystal structure of udp-n-acetylglucosamine2 1-carboxyvinyltransferase (mura) from listeria monocytogenes egd-e 69 d1e4cp_ not modelled 13.1 15 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase 70 d7odca1 not modelled 12.9 15 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 71 c2d40C_ not modelled 12.5 13 PDB header:oxidoreductase Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase; PDBTitle: crystal structure of z3393 from escherichia coli o157:h7 72 d1njjb1 not modelled 12.4 8 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 73 d2fcja1 not modelled 12.4 17 Fold:Toprim domain Superfamily:Toprim domain Family:Toprim domain 74 d1zx8a1 not modelled 12.4 8 Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:TM1367-like 75 d1nzya_ not modelled 11.6 16 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 76 c2zpmA_ not modelled 11.4 21 PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain b 77 d16vpa_ not modelled 10.9 21 Fold:Conserved core of transcriptional regulatory protein vp16 Superfamily:Conserved core of transcriptional regulatory protein vp16 Family:Conserved core of transcriptional regulatory protein vp16 78 c2booA_ not modelled 10.8 29 PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: the crystal structure of uracil-dna n-glycosylase (ung)2 from deinococcus radiodurans. 79 d2hxma1 not modelled 10.6 29 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase 80 d1ahsa_ not modelled 10.3 15 Fold:Viral protein domain Superfamily:Viral protein domain Family:Top domain of virus capsid protein 81 d1j5ya2 not modelled 10.3 5 Fold:HPr-like Superfamily:Putative transcriptional regulator TM1602, C-terminal domain Family:Putative transcriptional regulator TM1602, C-terminal domain 82 d2v9va2 not modelled 10.2 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 83 c2k1gA_ not modelled 10.1 13 PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein spr; PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162 84 d1okba_ not modelled 10.0 29 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase 85 d3euga_ not modelled 9.3 36 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase 86 d3bu7a1 not modelled 9.0 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 87 c3bu7A_ not modelled 9.0 14 PDB header:oxidoreductase Chain: A: PDB Molecule:gentisate 1,2-dioxygenase; PDBTitle: crystal structure and biochemical characterization of gdosp,2 a gentisate 1,2-dioxygenase from silicibacter pomeroyi 88 c2opiB_ not modelled 8.6 26 PDB header:lyase Chain: B: PDB Molecule:l-fuculose-1-phosphate aldolase; PDBTitle: crystal structure of l-fuculose-1-phosphate aldolase from bacteroides2 thetaiotaomicron 89 d1o98a1 not modelled 8.5 38 Fold:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Superfamily:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 90 c2kvcA_ not modelled 8.5 21 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a 91 c2i79B_ not modelled 8.4 31 PDB header:transferase Chain: B: PDB Molecule:acetyltransferase, gnat family; PDBTitle: the crystal structure of the acetyltransferase of gnat family from2 streptococcus pneumoniae 92 d2phda1 not modelled 8.2 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 93 d1f3ta1 not modelled 7.8 8 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 94 c3ooxA_ not modelled 7.7 16 PDB header:oxidoreductase Chain: A: PDB Molecule:putative 2og-fe(ii) oxygenase family protein; PDBTitle: crystal structure of a putative 2og-fe(ii) oxygenase family protein2 (cc_0200) from caulobacter crescentus at 1.44 a resolution 95 c2zhxG_ not modelled 7.6 36 PDB header:hydrolase/hydrolase inhibitor Chain: G: PDB Molecule:uracil-dna glycosylase; PDBTitle: crystal structure of uracil-dna glycosylase from mycobacterium2 tuberculosis in complex with a proteinaceous inhibitor 96 d1dt9a3 not modelled 7.5 15 Fold:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Superfamily:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Family:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 97 d1q6za1 not modelled 7.5 13 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 98 c3rrvC_ not modelled 7.4 12 PDB header:isomerase Chain: C: PDB Molecule:enoyl-coa hydratase/isomerase; PDBTitle: crystal structure of an enoyl-coa hydratase/isomerase from2 mycobacterium paratuberculosis 99 d1d5ra1 not modelled 7.4 19 Fold:C2 domain-like Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB) Family:PLC-like (P variant)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0