Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	N	V	I	P	L	Q	N	S	P	E	R	V	S	L	L	P	I	A	P	G	V	D	F	A	T	A	L	S	L	R	R	M	A	T	S	T	G	A	T	P	A	Y	L	L	A	P	E	V	S	A	L	L	F	Y	M	P	D	Q
Secondary structure
SS confidence
Disorder		?	?	?	?					?			?	?	?	?	?	?	?	?		?	?	?	?						?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	H	H	M	L	F	A	T	L	W	N	T	G	M	R	I	G	E	A	R	M	L	T	P	E	S	F	D	L	D	G	V	R	P	F	V	R	I	L	S	E	K	V	R	A	R	R	G	R	P	P	K	D	E	V	R	L	V	P	L
Secondary structure
SS confidence
Disorder																																										?	?	?			?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	D	I	S	Y	V	R	Q	M	E	S	W	M	I	T	T	R	P	R	R	R	E	P	L	W	A	V	T	D	E	T	M	R	N	W	L	K	Q	A	V	R	R	A	E	A	D	G	V	H	F	S	I	P	V	T	P	H	T	F	R
Secondary structure
SS confidence
Disorder																			?	?		?																									?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		H	S	Y	I	M	H	M	L	Y	H	R	Q	P	R	K	V	I	Q	A	L	A	G	H	R	D	P	R	S	M	E	V	Y	T	R	V	F	A	L	D	M	A	A	T	L	A	V	P	F	T	G	D	G	R	D	A	A	E	I	L	R
Secondary structure
SS confidence
Disorder																																															?	?	?	?	?	?	?	?	?					?	?
Disorder confidence
		.	.	.	.	.	.
Sequence		T	L	P	P	L	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3nkh chain B Region: 43 - 219 Aligned: 177 Modelled: 176 Confidence: 100.0% Identity: 19% PDB header:recombination Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of integrase from mrsa strain staphylococcus aureus Phyre2 PDB 1a0p chain A domain 2 Region: 43 - 225 Aligned: 175 Modelled: 177 Confidence: 99.9% Identity: 19% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 1aih chain A Region: 43 - 216 Aligned: 145 Modelled: 145 Confidence: 99.9% Identity: 17% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 1f44 chain A domain 2 Region: 40 - 214 Aligned: 164 Modelled: 175 Confidence: 99.9% Identity: 13% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 1ae9 chain A Region: 43 - 215 Aligned: 165 Modelled: 166 Confidence: 99.9% Identity: 14% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 1z1b chain A Region: 7 - 214 Aligned: 192 Modelled: 193 Confidence: 99.9% Identity: 14% PDB header:dna binding protein/dna Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site Phyre2 PDB 1crx chain A Region: 1 - 214 Aligned: 208 Modelled: 214 Confidence: 99.9% Identity: 13% PDB header:replication/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: cre recombinase/dna complex reaction intermediate i Phyre2 PDB 1ma7 chain A Region: 4 - 214 Aligned: 205 Modelled: 211 Confidence: 99.9% Identity: 10% PDB header:hydrolase, ligase/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27 Phyre2 PDB 1p7d chain A Region: 7 - 214 Aligned: 193 Modelled: 208 Confidence: 99.9% Identity: 11% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 1a0p chain A Region: 25 - 225 Aligned: 193 Modelled: 201 Confidence: 99.9% Identity: 20% PDB header:dna recombination Chain: A: PDB Molecule:site-specific recombinase xerd; PDBTitle: site-specific recombinase, xerd Phyre2 PDB 5crx chain B domain 2 Region: 38 - 202 Aligned: 159 Modelled: 165 Confidence: 99.8% Identity: 11% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 2a3v chain A Region: 34 - 224 Aligned: 191 Modelled: 191 Confidence: 99.7% Identity: 18% PDB header:recombination Chain: A: PDB Molecule:site-specific recombinase inti4; PDBTitle: structural basis for broad dna-specificity in integron2 recombination Phyre2 PDB 2v6e chain B Region: 62 - 212 Aligned: 148 Modelled: 151 Confidence: 95.9% Identity: 13% PDB header:hydrolase Chain: B: PDB Molecule:protelemorase; PDBTitle: protelomerase telk complexed with substrate dna Phyre2 PDB 2f4q chain A Region: 64 - 220 Aligned: 143 Modelled: 145 Confidence: 89.9% Identity: 13% PDB header:isomerase Chain: A: PDB Molecule:type i topoisomerase, putative; PDBTitle: crystal structure of deinococcus radiodurans topoisomerase ib Phyre2 PDB 2h7f chain X Region: 63 - 220 Aligned: 135 Modelled: 158 Confidence: 66.3% Identity: 11% PDB header:isomerase/dna Chain: X: PDB Molecule:dna topoisomerase 1; PDBTitle: structure of variola topoisomerase covalently bound to dna Phyre2 PDB 1khd chain A domain 1 Region: 43 - 82 Aligned: 40 Modelled: 40 Confidence: 35.9% Identity: 15% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 1a41 chain A Region: 79 - 220 Aligned: 119 Modelled: 142 Confidence: 33.4% Identity: 10% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Eukaryotic DNA topoisomerase I, catalytic core Phyre2 PDB 2tpt chain A domain 1 Region: 43 - 82 Aligned: 40 Modelled: 40 Confidence: 26.5% Identity: 18% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 1uou chain A domain 1 Region: 45 - 82 Aligned: 38 Modelled: 38 Confidence: 25.8% Identity: 13% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 2khq chain A Region: 4 - 33 Aligned: 30 Modelled: 30 Confidence: 21.9% Identity: 7% PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of a phage integrase ssp19472 fragment 59-159 from staphylococcus saprophyticus,3 northeast structural genomics consortium target syr103b Phyre2 1 c3nkhB_ 2 d1a0pa2 3 d1aiha_ 4 d1f44a2 5 d1ae9a_ 6 c1z1bA_ 7 c1crxA_ 8 c1ma7A_ 9 d1p7da_ 10 c1a0pA_ 11 d5crxb2 12 c2a3vA_ 13 c2v6eB_ 14 c2f4qA_ 15 c2h7fX_ 16 d1khda1 17 d1a41a_ 18 d2tpta1 19 d1uoua1 20 c2khqA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3nkhB_ 100.0 19 PDB header:recombination Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of integrase from mrsa strain staphylococcus aureus 2 d1a0pa2 99.9 19 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 3 d1aiha_ 99.9 17 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 4 d1f44a2 99.9 13 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 5 d1ae9a_ 99.9 14 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 6 c1z1bA_ 99.9 14 PDB header:dna binding protein/dna Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site 7 c1crxA_ 99.9 13 PDB header:replication/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: cre recombinase/dna complex reaction intermediate i 8 c1ma7A_ 99.9 10 PDB header:hydrolase, ligase/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27 9 d1p7da_ 99.9 11 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 10 c1a0pA_ 99.9 20 PDB header:dna recombination Chain: A: PDB Molecule:site-specific recombinase xerd; PDBTitle: site-specific recombinase, xerd 11 d5crxb2 99.8 11 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 12 c2a3vA_ 99.7 18 PDB header:recombination Chain: A: PDB Molecule:site-specific recombinase inti4; PDBTitle: structural basis for broad dna-specificity in integron2 recombination 13 c2v6eB_ 95.9 13 PDB header:hydrolase Chain: B: PDB Molecule:protelemorase; PDBTitle: protelomerase telk complexed with substrate dna 14 c2f4qA_ 89.9 13 PDB header:isomerase Chain: A: PDB Molecule:type i topoisomerase, putative; PDBTitle: crystal structure of deinococcus radiodurans topoisomerase ib 15 c2h7fX_ 66.3 11 PDB header:isomerase/dna Chain: X: PDB Molecule:dna topoisomerase 1; PDBTitle: structure of variola topoisomerase covalently bound to dna 16 d1khda1 35.9 15 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 17 d1a41a_ 33.4 10 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Eukaryotic DNA topoisomerase I, catalytic core 18 d2tpta1 26.5 18 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 19 d1uoua1 25.8 13 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 20 c2khqA_ 21.9 7 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of a phage integrase ssp19472 fragment 59-159 from staphylococcus saprophyticus,3 northeast structural genomics consortium target syr103b 21 d1v8ga1 not modelled 21.8 23 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 22 d1ynra1 not modelled 21.5 7 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 23 c2kkvA_ not modelled 20.5 15 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of an integrase domain from protein2 spa4288 from salmonella enterica, northeast structural3 genomics consortium target slr105h 24 d1p4ea2 not modelled 19.6 13 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 25 c2kkpA_ not modelled 18.3 9 PDB header:dna binding protein Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of the phage integrase sam-like2 domain from moth 1796 from moorella thermoacetica.3 northeast structural genomics consortium target mtr39k4 (residues 64-171). 26 c1otpA_ not modelled 17.9 18 PDB header:phosphorylase Chain: A: PDB Molecule:thymidine phosphorylase; PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase 27 c3h5qA_ not modelled 16.1 18 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase; PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus 28 c1p4eB_ not modelled 15.9 13 PDB header:dna binding protein/recombination/dna Chain: B: PDB Molecule:recombinase flp protein; PDBTitle: flpe w330f mutant-dna holliday junction complex 29 c2kobA_ not modelled 15.8 4 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of clolep_01837 (fragment 61-160)2 from clostridium leptum. northeast structural genomics3 consortium target qlr8a 30 c2j0fC_ not modelled 15.4 13 PDB header:transferase Chain: C: PDB Molecule:thymidine phosphorylase; PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design 31 c2dsjA_ not modelled 15.3 18 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase; PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8 32 d1cc5a_ not modelled 15.0 19 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 33 c2kj8A_ not modelled 14.7 17 PDB header:dna binding protein Chain: A: PDB Molecule:putative prophage cps-53 integrase; PDBTitle: nmr structure of fragment 87-196 from the putative phage2 integrase ints of e. coli: northeast structural genomics3 consortium target er652a, psi-2 34 d1ofcx1 not modelled 14.6 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 35 d1brwa1 not modelled 14.6 23 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 36 c1w2lA_ not modelled 13.7 35 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome oxidase subunit ii; PDBTitle: cytochrome c domain of caa3 oxygen oxidoreductase 37 d1sxea_ not modelled 12.8 15 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:Pointed domain 38 c2kiwA_ not modelled 12.6 6 PDB header:dna binding protein Chain: A: PDB Molecule:int protein; PDBTitle: solution nmr structure of the domain n-terminal to the2 integrase domain of sh1003 from staphylococcus3 haemolyticus. northeast structural genomics consortium4 target shr105f (64-166). 39 c2bpqB_ not modelled 11.4 10 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyltransferase (trpd) from2 mycobacterium tuberculosis (apo structure) 40 c1brwB_ not modelled 11.3 24 PDB header:transferase Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase); PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation 41 c2d0sA_ not modelled 10.5 0 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus 42 c2w9kA_ not modelled 10.3 12 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crithidia fasciculata cytochrome c 43 d1hroa_ not modelled 10.0 6 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 44 c1vquB_ not modelled 9.9 15 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase 2; PDBTitle: crystal structure of anthranilate phosphoribosyltransferase 22 (17130499) from nostoc sp. at 1.85 a resolution 45 d1cora_ not modelled 9.7 18 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 46 d1a56a_ not modelled 9.7 12 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 47 d1sv0c_ not modelled 9.2 9 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:Pointed domain 48 c3oa8B_ not modelled 8.6 18 PDB header:heme-binding protein/heme-binding protei Chain: B: PDB Molecule:soxx; PDBTitle: diheme soxax 49 c2kd1A_ not modelled 8.4 3 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dna integration/recombination/invertion protein; PDBTitle: solution nmr structure of the integrase-like domain from2 bacillus cereus ordered locus bc_1272. northeast3 structural genomics consortium target bcr268f 50 c1khdD_ not modelled 8.2 15 PDB header:transferase Chain: D: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure analysis of the anthranilate2 phosphoribosyltransferase from erwinia carotovora at 1.93 resolution (current name, pectobacterium carotovorum) 51 d1ijwc_ not modelled 8.0 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 52 c2b9sA_ not modelled 7.9 13 PDB header:isomerase/dna Chain: A: PDB Molecule:topoisomerase i-like protein; PDBTitle: crystal structure of heterodimeric l. donovani2 topoisomerase i-vanadate-dna complex 53 d1hcra_ not modelled 7.8 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 54 c2kj5A_ not modelled 7.6 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of a domain from a putative phage2 integrase protein nmul_a0064 from nitrosospira multiformis,3 northeast structural genomics consortium target nmr46c 55 d351ca_ not modelled 7.6 18 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 56 d1sfka_ not modelled 7.4 20 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 57 d1fi3a_ not modelled 7.2 12 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 58 d1ccra_ not modelled 6.9 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 59 c2zzsW_ not modelled 6.8 19 PDB header:electron transport Chain: W: PDB Molecule: PDBTitle: crystal structure of cytochrome c554 from vibrio2 parahaemolyticus strain rimd2210633 60 d1m70a1 not modelled 6.8 18 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 61 c2dkxA_ not modelled 6.6 16 PDB header:signaling protein Chain: A: PDB Molecule:sam pointed domain-containing ets transcription PDBTitle: solution structure of the sam_pnt-domain of ets2 transcription factor pdef (prostate ets) 62 d1o17a1 not modelled 6.6 18 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 63 c2juhA_ not modelled 6.2 13 PDB header:nuclear protein Chain: A: PDB Molecule:telomere binding protein tbp1; PDBTitle: solution structure of dna binding domain of ngtrf1 64 d1h1oa1 not modelled 6.2 29 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 65 d1dvha_ not modelled 6.2 31 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 66 d1dvva_ not modelled 6.1 18 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 67 c2hjhB_ not modelled 5.9 14 PDB header:hydrolase Chain: B: PDB Molecule:nad-dependent histone deacetylase sir2; PDBTitle: crystal structure of the sir2 deacetylase 68 d1m70a2 not modelled 5.9 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 69 d1c53a_ not modelled 5.9 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 70 d3c2ca_ not modelled 5.6 12 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 71 c3mk7F_ not modelled 5.6 35 PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase 72 d1sfkb_ not modelled 5.4 20 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0