Email l.a.kelley@imperial.ac.uk Description P16916 Date Wed Jan 25 15:20:39 GMT 2012 Unique Job ID 47ca9e2d682e1b9a

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2oy7A_ 95.2 16 PDB header:membrane protein Chain: A: PDB Molecule:outer surface protein a; PDBTitle: the crystal structure of ospa mutant 2 d1x3za1 52.2 19 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 3 d1ulva3 45.0 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:CBD9-like Family:Glucodextranase, domain C 4 c1n7dA_ 44.1 11 PDB header:lipid transport Chain: A: PDB Molecule:low-density lipoprotein receptor; PDBTitle: extracellular domain of the ldl receptor 5 c3eswA_ 31.3 19 PDB header:hydrolase Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine PDBTitle: complex of yeast pngase with glcnac2-iac. 6 c3mswA_ 30.2 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein with unknown function (bf3112) from2 bacteroides fragilis nctc 9343 at 1.90 a resolution 7 d1oeya_ 29.6 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 8 d2f4ma1 29.4 18 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 9 c2ivzD_ 26.0 11 PDB header:protein transport/hydrolase Chain: D: PDB Molecule:protein tolb; PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain 10 c3rwxA_ 24.5 21 PDB header:transport protein Chain: A: PDB Molecule:hypothetical bacterial outer membrane protein; PDBTitle: crystal structure of a hypothetical bacterial outer membrane protein2 (bf2706) from bacteroides fragilis nctc 9343 at 2.40 a resolution 11 c2w8bB_ 23.3 12 PDB header:protein transport/membrane protein Chain: B: PDB Molecule:protein tolb; PDBTitle: crystal structure of processed tolb in complex with pal 12 c1mjeA_ 23.3 28 PDB header:gene regulation/antitumor protein/dna Chain: A: PDB Molecule:breast cancer 2; PDBTitle: structure of a brca2-dss1-ssdna complex 13 c1miuA_ 23.0 27 PDB header:gene regulation/antitumor protein Chain: A: PDB Molecule:breast cancer type 2 susceptibility protein; PDBTitle: structure of a brca2-dss1 complex 14 d1khda2 22.8 35 Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 15 c2kijA_ 22.7 25 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the actuator domain of the copper-2 transporting atpase atp7a 16 c2fz0A_ 22.2 19 PDB header:membrane protein Chain: A: PDB Molecule:v-snare component of the vacuolar snare complex PDBTitle: identification of yeast r-snare nyv1p as a novel longin2 domain protein 17 c1j5qB_ 21.5 26 PDB header:viral protein Chain: B: PDB Molecule:major capsid protein; PDBTitle: the structure and evolution of the major capsid protein of a large,2 lipid-containing, dna virus. 18 d1qs0b1 18.8 32 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase Pyr module 19 d1o5ua_ 18.5 8 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Hypothetical protein TM1112 20 d1bcga_ 16.2 35 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Long-chain scorpion toxins 21 c2hc8A_ not modelled 15.5 30 PDB header:transport protein Chain: A: PDB Molecule:cation-transporting atpase, p-type; PDBTitle: structure of the a. fulgidus copa a-domain 22 c1iyjB_ not modelled 15.2 27 PDB header:gene regulation/antitumor protein Chain: B: PDB Molecule:breast cancer susceptibility; PDBTitle: structure of a brca2-dss1 complex 23 c3e5zA_ not modelled 14.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative gluconolactonase; PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130. 24 d1pk6c_ not modelled 14.0 27 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 25 d1ei5a1 not modelled 13.9 32 Fold:Streptavidin-like Superfamily:D-aminopeptidase, middle and C-terminal domains Family:D-aminopeptidase, middle and C-terminal domains 26 c1dskA_ not modelled 13.6 100 PDB header:viral peptide Chain: A: PDB Molecule:vpr protein; PDBTitle: nmr solution structure of vpr59_86, 20 structures 27 c2kz5A_ not modelled 13.5 18 PDB header:transcription Chain: A: PDB Molecule:transcription factor nf-e2 45 kda subunit; PDBTitle: solution nmr structure of transcription factor nf-e2 subunit's dna2 binding domain from homo sapiens, northeast structural genomics3 consortium target hr4653b 28 d1miua3 not modelled 13.4 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 29 c2x12A_ not modelled 13.2 23 PDB header:cell adhesion Chain: A: PDB Molecule:fimbriae-associated protein fap1; PDBTitle: ph-induced modulation of streptococcus parasanguinis2 adhesion by fap1 fimbriae 30 d1bcoa1 not modelled 13.2 17 Fold:mu transposase, C-terminal domain Superfamily:mu transposase, C-terminal domain Family:mu transposase, C-terminal domain 31 d1vk8a_ not modelled 13.1 14 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 32 c2ka3C_ not modelled 13.0 36 PDB header:structural protein Chain: C: PDB Molecule:emilin-1; PDBTitle: structure of emilin-1 c1q-like domain 33 d1pzqa_ not modelled 12.6 32 Fold:Dimerisation interlock Superfamily:Docking domain A of the erythromycin polyketide synthase (DEBS) Family:Docking domain A of the erythromycin polyketide synthase (DEBS) 34 d1pk6b_ not modelled 12.5 27 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 35 d1iyjb3 not modelled 12.4 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 36 c2cseU_ not modelled 12.2 19 PDB header:virus Chain: U: PDB Molecule:guanylyltransferase; PDBTitle: features of reovirus outer-capsid protein mu1 revealed by2 electron and image reconstruction of the virion at 7.0-a3 resolution 37 d2joya1 not modelled 11.9 7 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L14e 38 d1brwa3 not modelled 11.6 26 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 39 d1lxna_ not modelled 11.5 15 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 40 c3bmxB_ not modelled 11.5 25 PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized lipoprotein ybbd; PDBTitle: beta-n-hexosaminidase (ybbd) from bacillus subtilis 41 d1c3ha_ not modelled 11.3 31 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 42 c3dczA_ not modelled 11.2 21 PDB header:oxidoreductase Chain: A: PDB Molecule:putative rnfg subunit of electron transport complex; PDBTitle: crystal structure of a putative rnfg subunit of electron transport2 complex (tm0246) from thermotoga maritima at 1.65 a resolution 43 d1m3ya2 not modelled 11.0 33 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Group II dsDNA viruses VP Family:Major capsid protein vp54 44 d1uerc2 not modelled 10.9 20 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 45 c1zrxA_ not modelled 10.9 23 PDB header:antimicrobial protein, antibiotic Chain: A: PDB Molecule:stomoxyn; PDBTitle: solution structure of stomoxyn in h20/tfe 50% 46 c3fnkA_ not modelled 10.9 23 PDB header:structural protein Chain: A: PDB Molecule:cellulosomal scaffoldin adaptor protein b; PDBTitle: crystal structure of the second type ii cohesin module from2 the cellulosomal adaptor scaa scaffoldin of acetivibrio3 cellulolyticus 47 d2tpta3 not modelled 10.7 26 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 48 c3izcN_ not modelled 10.6 21 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein rpl14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 49 c2jpnA_ not modelled 10.5 26 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent dna helicase uvsw; PDBTitle: solution structure of t4 bacteriophage helicase uvsw.1 50 c3h1sB_ not modelled 10.2 15 PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from francisella tularensis2 subsp. tularensis schu s4 51 c3iz5N_ not modelled 10.2 13 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 52 c1m4xC_ not modelled 10.0 33 PDB header:virus Chain: C: PDB Molecule:pbcv-1 virus capsid; PDBTitle: pbcv-1 virus capsid, quasi-atomic model 53 c1trlB_ not modelled 10.0 19 PDB header:hydrolase (metalloprotease) Chain: B: PDB Molecule:thermolysin fragment 255 - 316; PDBTitle: nmr solution structure of the c-terminal fragment 255-3162 of thermolysin: a dimer formed by subunits having the3 native structure 54 d2pyta1 not modelled 10.0 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:EutQ-like 55 c2oajA_ not modelled 10.0 12 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:protein sni1; PDBTitle: crystal structure of sro7 from s. cerevisiae 56 c2jttD_ not modelled 9.9 36 PDB header:calcium binding protein/antitumor protei Chain: D: PDB Molecule:calcyclin-binding protein; PDBTitle: solution structure of calcium loaded s100a6 bound to c-2 terminal siah-1 interacting protein 57 d1lxja_ not modelled 9.5 12 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 58 c3lk6A_ not modelled 9.3 25 PDB header:hydrolase Chain: A: PDB Molecule:lipoprotein ybbd; PDBTitle: beta-n-hexosaminidase n318d mutant (ybbd_n318d) from bacillus subtilis 59 c3jroA_ not modelled 9.1 13 PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice 60 c2gacA_ not modelled 9.1 13 PDB header:hydrolase Chain: A: PDB Molecule:glycosylasparaginase; PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum 61 d1sknp_ not modelled 9.0 11 Fold:A DNA-binding domain in eukaryotic transcription factors Superfamily:A DNA-binding domain in eukaryotic transcription factors Family:A DNA-binding domain in eukaryotic transcription factors 62 d1ejxc1 not modelled 9.0 26 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:alpha-Subunit of urease 63 d1dfma_ not modelled 8.9 47 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease BglII 64 c2jtmA_ not modelled 8.9 29 PDB header:dna binding protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of sso6901 from sulfolobus solfataricus2 p2 65 d1jnpa_ not modelled 8.7 24 Fold:Oncogene products Superfamily:Oncogene products Family:Oncogene products 66 d1a1xa_ not modelled 8.7 19 Fold:Oncogene products Superfamily:Oncogene products Family:Oncogene products 67 c3nv4A_ not modelled 8.7 28 PDB header:sugar binding protein Chain: A: PDB Molecule:galectin 9 short isoform variant; PDBTitle: crystal structure of human galectin-9 c-terminal crd in complex with2 sialyllactose 68 c2ksnA_ not modelled 8.6 18 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin domain-containing protein 2; PDBTitle: solution structure of the n-terminal domain of dc-ubp/ubtd2 69 d1pk6a_ not modelled 8.6 22 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 70 c1bdeA_ not modelled 8.4 27 PDB header:aids Chain: A: PDB Molecule:vpr protein; PDBTitle: helical structure of polypeptides from the c-terminal half2 of hiv-1 vpr, nmr, 20 structures 71 c3nqhA_ not modelled 8.4 15 PDB header:hydrolase Chain: A: PDB Molecule:glycosyl hydrolase; PDBTitle: crystal structure of a glycosyl hydrolase (bt_2959) from bacteroides2 thetaiotaomicron vpi-5482 at 2.11 a resolution 72 d2f1fa1 not modelled 8.3 16 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 73 d1f00i2 not modelled 8.3 33 Fold:Immunoglobulin-like beta-sandwich Superfamily:Invasin/intimin cell-adhesion fragments Family:Invasin/intimin cell-adhesion fragments 74 d1xata_ not modelled 8.3 21 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 75 c2vtwF_ not modelled 8.2 32 PDB header:viral protein Chain: F: PDB Molecule:fiber protein 2; PDBTitle: structure of the c-terminal head domain of the fowl2 adenovirus type 1 short fibre 76 c1gv3B_ not modelled 8.2 11 PDB header:manganese superoxide dismutase Chain: B: PDB Molecule:manganese superoxide dismutase; PDBTitle: the 2.0 angstrom resolution structure of the catalytic2 portion of a cyanobacterial membrane-bound manganese3 superoxide dismutase 77 c1dfwA_ not modelled 8.2 57 PDB header:immune system Chain: A: PDB Molecule:lung surfactant protein b; PDBTitle: conformational mapping of the n-terminal segment of2 surfactant protein b in lipid using 13c-enhanced fourier3 transform infrared spectroscopy (ftir) 78 d1x6va1 not modelled 8.2 19 Fold:PUA domain-like Superfamily:PUA domain-like Family:ATP sulfurylase N-terminal domain 79 d2pc6a2 not modelled 8.1 16 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 80 c2wlgA_ not modelled 7.9 26 PDB header:transferase Chain: A: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystallographic analysis of the polysialic acid o-2 acetyltransferase oatwy 81 d1e9yb1 not modelled 7.9 26 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:alpha-Subunit of urease 82 d1o91a_ not modelled 7.9 31 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 83 c1o91B_ not modelled 7.9 31 PDB header:collagen Chain: B: PDB Molecule:collagen alpha 1(viii) chain; PDBTitle: crystal structure of a collagen viii nc1 domain trimer 84 c2iu9C_ not modelled 7.8 23 PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii) 85 d2q09a1 not modelled 7.8 80 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Imidazolonepropionase-like 86 d2jdqd1 not modelled 7.7 20 Fold:PB2 C-terminal domain-like Superfamily:PB2 C-terminal domain-like Family:PB2 C-terminal domain-like 87 d2i5ua1 not modelled 7.7 17 Fold:DnaD domain-like Superfamily:DnaD domain-like Family:DnaD domain 88 d1w9pa2 not modelled 7.6 18 Fold:FKBP-like Superfamily:Chitinase insertion domain Family:Chitinase insertion domain 89 d1jsga_ not modelled 7.5 24 Fold:Oncogene products Superfamily:Oncogene products Family:Oncogene products 90 d2hqya2 not modelled 7.5 19 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:FemXAB nonribosomal peptidyltransferases 91 d1azpa_ not modelled 7.5 17 Fold:SH3-like barrel Superfamily:Chromo domain-like Family:"Histone-like" proteins from archaea 92 c2a03A_ not modelled 7.5 17 PDB header:oxidoreductase Chain: A: PDB Molecule:fe-superoxide dismutase homolog; PDBTitle: superoxide dismutase protein from plasmodium berghei 93 c3cl5A_ not modelled 7.4 20 PDB header:hydrolase Chain: A: PDB Molecule:hemagglutinin-esterase; PDBTitle: structure of coronavirus hemagglutinin-esterase in complex with 4,9-o-2 diacetyl sialic acid 94 d1r7aa1 not modelled 7.4 36 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 95 d1thqa_ not modelled 7.4 50 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane enzyme PagP 96 d1zaka2 not modelled 7.4 33 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 97 c2kjmA_ not modelled 7.4 16 PDB header:rna binding protein Chain: A: PDB Molecule:histone rna hairpin-binding protein; PDBTitle: solution structure of slbp rna binding domain fragment 98 c1t3dB_ not modelled 7.3 30 PDB header:transferase Chain: B: PDB Molecule:serine acetyltransferase; PDBTitle: crystal structure of serine acetyltransferase from e.coli at 2.2a 99 d1s6la1 not modelled 7.3 44 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MerB N-terminal domain-like