Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	A	L	I	Q	R	V	T	R	A	S	V	T	V	E	G	E	V	T	G	E	I	G	A	G	L	L	V	L	L	G	V	E	K	D	D	D	E	Q	K	A	N	R	L	C	E	R	V	L	G	Y	R	I	F	S	D	A	E	G
Secondary structure
SS confidence
Disorder		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	M	N	L	N	V	Q	Q	A	G	G	S	V	L	V	V	S	Q	F	T	L	A	A	D	T	E	R	G	M	R	P	S	F	S	K	G	A	S	P	D	R	A	E	A	L	Y	D	Y	F	V	E	R	C	R	Q	Q	E	M	N	T
Secondary structure
SS confidence
Disorder				?							?										?	?	?	?	?	?	?	?	?	?	?		?	?	?	?	?	?	?																	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Sequence		Q	T	G	R	F	A	A	D	M	Q	V	S	L	V	N	D	G	P	V	T	F	W	L	Q	V
Secondary structure
SS confidence
Disorder																										?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1jke chain A Region: 1 - 145 Aligned: 145 Modelled: 145 Confidence: 100.0% Identity: 100% Fold: DTD-like Superfamily: DTD-like Family: DTD-like Phyre2 PDB 1j7g chain A Region: 1 - 145 Aligned: 144 Modelled: 145 Confidence: 100.0% Identity: 68% Fold: DTD-like Superfamily: DTD-like Family: DTD-like Phyre2 PDB 2dbo chain A Region: 1 - 144 Aligned: 144 Modelled: 144 Confidence: 100.0% Identity: 44% PDB header:hydrolase Chain: A: PDB Molecule:d-tyrosyl-trna(tyr) deacylase; PDBTitle: crystal structure of d-tyr-trna(tyr) deacylase from aquifex aeolicus Phyre2 PDB 3ko7 chain E Region: 1 - 144 Aligned: 144 Modelled: 144 Confidence: 100.0% Identity: 31% PDB header:hydrolase Chain: E: PDB Molecule:d-tyrosyl-trna(tyr) deacylase; PDBTitle: dtd from plasmodium falciparum in complex with d-lysine Phyre2 PDB 2okv chain C Region: 1 - 144 Aligned: 143 Modelled: 144 Confidence: 100.0% Identity: 41% PDB header:hydrolase Chain: C: PDB Molecule:probable d-tyrosyl-trna(tyr) deacylase 1; PDBTitle: c-myc dna unwinding element binding protein Phyre2 PDB 1tc5 chain A Region: 1 - 145 Aligned: 144 Modelled: 145 Confidence: 100.0% Identity: 19% Fold: DTD-like Superfamily: DTD-like Family: DTD-like Phyre2 PDB 2k8e chain A domain 1 Region: 54 - 78 Aligned: 25 Modelled: 25 Confidence: 68.6% Identity: 8% Fold: YegP-like Superfamily: YegP-like Family: YegP-like Phyre2 PDB 2k49 chain A domain 2 Region: 54 - 78 Aligned: 25 Modelled: 25 Confidence: 67.1% Identity: 12% Fold: YegP-like Superfamily: YegP-like Family: YegP-like Phyre2 PDB 3bid chain A domain 1 Region: 54 - 78 Aligned: 25 Modelled: 25 Confidence: 66.5% Identity: 20% Fold: YegP-like Superfamily: YegP-like Family: YegP-like Phyre2 PDB 2k7i chain A domain 1 Region: 54 - 78 Aligned: 25 Modelled: 25 Confidence: 61.3% Identity: 20% Fold: YegP-like Superfamily: YegP-like Family: YegP-like Phyre2 PDB 2k7i chain B Region: 54 - 78 Aligned: 25 Modelled: 25 Confidence: 61.3% Identity: 20% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:upf0339 protein atu0232; PDBTitle: solution nmr structure of protein atu0232 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att3. ontario center for structural proteomics target atc0223. Phyre2 PDB 2k49 chain A Region: 54 - 78 Aligned: 25 Modelled: 25 Confidence: 55.9% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0339 protein so_3888; PDBTitle: solution nmr structure of upf0339 protein so3888 from shewanella2 oneidensis. northeast structural genomics consortium target sor190 Phyre2 PDB 2k8e chain A Region: 54 - 78 Aligned: 25 Modelled: 25 Confidence: 52.1% Identity: 8% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0339 protein yegp; PDBTitle: solution nmr structure of protein of unknown function yegp from e.2 coli. ontario center for structural proteomics target ec0640_1_1233 northeast structural genomics consortium target et102. Phyre2 PDB 1s7i chain A Region: 90 - 140 Aligned: 51 Modelled: 51 Confidence: 45.8% Identity: 8% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: DGPF domain (Pfam 04946) Phyre2 PDB 2z8n chain B Region: 78 - 141 Aligned: 57 Modelled: 64 Confidence: 45.0% Identity: 19% PDB header:lyase Chain: B: PDB Molecule:27.5 kda virulence protein; PDBTitle: structural basis for the catalytic mechanism of phosphothreonine lyase Phyre2 PDB 1lln chain A Region: 106 - 145 Aligned: 40 Modelled: 40 Confidence: 35.7% Identity: 23% Fold: Ribosome inactivating proteins (RIP) Superfamily: Ribosome inactivating proteins (RIP) Family: Plant cytotoxins Phyre2 PDB 3i0u chain A Region: 78 - 141 Aligned: 57 Modelled: 64 Confidence: 26.4% Identity: 16% PDB header:lyase Chain: A: PDB Molecule:phosphothreonine lyase ospf; PDBTitle: structure of the type iii effector/phosphothreonine lyase ospf from2 shigella flexneri Phyre2 PDB 1k6m chain A Region: 87 - 137 Aligned: 50 Modelled: 51 Confidence: 23.3% Identity: 6% PDB header:transferase, hydrolase Chain: A: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6- PDBTitle: crystal structure of human liver 6-phosphofructo-2-2 kinase/fructose-2,6-bisphosphatase Phyre2 PDB 2dcl chain B Region: 50 - 126 Aligned: 39 Modelled: 39 Confidence: 23.2% Identity: 28% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical upf0166 protein ph1503; PDBTitle: structure of ph1503 protein from pyrococcus horikoshii ot3 Phyre2 PDB 2k8e chain A domain 2 Region: 56 - 78 Aligned: 23 Modelled: 23 Confidence: 21.8% Identity: 26% Fold: YegP-like Superfamily: YegP-like Family: YegP-like Phyre2 1 d1jkea_ 2 d1j7ga_ 3 c2dboA_ 4 c3ko7E_ 5 c2okvC_ 6 d1tc5a_ 7 d2k8ea1 8 d2k49a2 9 d3bida1 10 d2k7ia1 11 c2k7iB_ 12 c2k49A_ 13 c2k8eA_ 14 d1s7ia_ 15 c2z8nB_ 16 d1llna_ 17 c3i0uA_ 18 c1k6mA_ 19 c2dclB_ 20 d2k8ea2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1jkea_ 100.0 100 Fold:DTD-like Superfamily:DTD-like Family:DTD-like 2 d1j7ga_ 100.0 68 Fold:DTD-like Superfamily:DTD-like Family:DTD-like 3 c2dboA_ 100.0 44 PDB header:hydrolase Chain: A: PDB Molecule:d-tyrosyl-trna(tyr) deacylase; PDBTitle: crystal structure of d-tyr-trna(tyr) deacylase from aquifex aeolicus 4 c3ko7E_ 100.0 31 PDB header:hydrolase Chain: E: PDB Molecule:d-tyrosyl-trna(tyr) deacylase; PDBTitle: dtd from plasmodium falciparum in complex with d-lysine 5 c2okvC_ 100.0 41 PDB header:hydrolase Chain: C: PDB Molecule:probable d-tyrosyl-trna(tyr) deacylase 1; PDBTitle: c-myc dna unwinding element binding protein 6 d1tc5a_ 100.0 19 Fold:DTD-like Superfamily:DTD-like Family:DTD-like 7 d2k8ea1 68.6 8 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 8 d2k49a2 67.1 12 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 9 d3bida1 66.5 20 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 10 d2k7ia1 61.3 20 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 11 c2k7iB_ 61.3 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:upf0339 protein atu0232; PDBTitle: solution nmr structure of protein atu0232 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att3. ontario center for structural proteomics target atc0223. 12 c2k49A_ 55.9 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0339 protein so_3888; PDBTitle: solution nmr structure of upf0339 protein so3888 from shewanella2 oneidensis. northeast structural genomics consortium target sor190 13 c2k8eA_ 52.1 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0339 protein yegp; PDBTitle: solution nmr structure of protein of unknown function yegp from e.2 coli. ontario center for structural proteomics target ec0640_1_1233 northeast structural genomics consortium target et102. 14 d1s7ia_ 45.8 8 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:DGPF domain (Pfam 04946) 15 c2z8nB_ 45.0 19 PDB header:lyase Chain: B: PDB Molecule:27.5 kda virulence protein; PDBTitle: structural basis for the catalytic mechanism of phosphothreonine lyase 16 d1llna_ 35.7 23 Fold:Ribosome inactivating proteins (RIP) Superfamily:Ribosome inactivating proteins (RIP) Family:Plant cytotoxins 17 c3i0uA_ 26.4 16 PDB header:lyase Chain: A: PDB Molecule:phosphothreonine lyase ospf; PDBTitle: structure of the type iii effector/phosphothreonine lyase ospf from2 shigella flexneri 18 c1k6mA_ 23.3 6 PDB header:transferase, hydrolase Chain: A: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6- PDBTitle: crystal structure of human liver 6-phosphofructo-2-2 kinase/fructose-2,6-bisphosphatase 19 c2dclB_ 23.2 28 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical upf0166 protein ph1503; PDBTitle: structure of ph1503 protein from pyrococcus horikoshii ot3 20 d2k8ea2 21.8 26 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 21 c2dgaA_ not modelled 19.9 31 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: crystal structure of hexameric beta-glucosidase in wheat 22 d1onka_ not modelled 19.6 16 Fold:Ribosome inactivating proteins (RIP) Superfamily:Ribosome inactivating proteins (RIP) Family:Plant cytotoxins 23 c3gnoA_ not modelled 19.5 25 PDB header:hydrolase Chain: A: PDB Molecule:os03g0212800 protein; PDBTitle: crystal structure of a rice os3bglu6 beta-glucosidase 24 d2giab1 not modelled 16.3 22 Fold:ssDNA-binding transcriptional regulator domain Superfamily:ssDNA-binding transcriptional regulator domain Family:Guide RNA binding protein gBP 25 c2giaB_ not modelled 16.3 22 PDB header:translation Chain: B: PDB Molecule:mitochondrial rna-binding protein 1; PDBTitle: crystal structures of trypanosoma bruciei mrp1/mrp2 26 c1bifA_ not modelled 15.7 10 PDB header:bifunctional enzyme Chain: A: PDB Molecule:6-phosphofructo-2-kinase/ fructose-2,6-bisphosphatase; PDBTitle: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase bifunctional2 enzyme complexed with atp-g-s and phosphate 27 d2d6fc3 not modelled 15.6 19 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:GatB/GatE catalytic domain-like 28 c3tekA_ not modelled 14.6 31 PDB header:dna binding protein Chain: A: PDB Molecule:thermodbp-single stranded dna binding protein; PDBTitle: thermodbp: a non-canonical single-stranded dna binding protein with a2 novel structure and mechanism 29 d1a9xb2 not modelled 13.4 42 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 30 c2d6fC_ not modelled 13.3 19 PDB header:ligase/rna Chain: C: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit e; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) 31 d1ofua2 not modelled 11.6 17 Fold:Bacillus chorismate mutase-like Superfamily:Tubulin C-terminal domain-like Family:Tubulin, C-terminal domain 32 c2xtsD_ not modelled 10.3 23 PDB header:oxidoreductase/electron transport Chain: D: PDB Molecule:cytochrome; PDBTitle: crystal structure of the sulfane dehydrogenase soxcd from paracoccus2 pantotrophus 33 d2k49a1 not modelled 10.1 25 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 34 d1ii2a2 not modelled 10.0 11 Fold:PEP carboxykinase N-terminal domain Superfamily:PEP carboxykinase N-terminal domain Family:PEP carboxykinase N-terminal domain 35 d1s9ra_ not modelled 9.9 21 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Arginine deiminase 36 c2an7A_ not modelled 9.9 21 PDB header:dna binding protein Chain: A: PDB Molecule:protein pard; PDBTitle: solution structure of the bacterial antidote pard 37 d1s1ma1 not modelled 9.7 21 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 38 d1nlqa_ not modelled 9.7 23 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Nucleoplasmin-like core domain Family:Nucleoplasmin-like core domain 39 d1j3ba2 not modelled 9.5 28 Fold:PEP carboxykinase N-terminal domain Superfamily:PEP carboxykinase N-terminal domain Family:PEP carboxykinase N-terminal domain 40 d1rq2a2 not modelled 9.3 15 Fold:Bacillus chorismate mutase-like Superfamily:Tubulin C-terminal domain-like Family:Tubulin, C-terminal domain 41 d2ftsa1 not modelled 9.0 21 Fold:beta-clip Superfamily:MoeA C-terminal domain-like Family:MoeA C-terminal domain-like 42 c2hl2A_ not modelled 8.9 20 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase; PDBTitle: crystal structure of the editing domain of threonyl-trna2 synthetase from pyrococcus abyssi in complex with an3 analog of seryladenylate 43 d1nm3a2 not modelled 8.4 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 44 d2j44a2 not modelled 8.4 13 Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:PUD-like 45 d1xrua1 not modelled 8.2 26 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:KduI-like 46 c3h0mE_ not modelled 8.1 20 PDB header:ligase Chain: E: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus 47 c3h16A_ not modelled 8.1 14 PDB header:signaling protein Chain: A: PDB Molecule:tir protein; PDBTitle: crystal structure of a bacteria tir domain, pdtir from2 paracoccus denitrificans 48 c3k6sB_ not modelled 7.7 26 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-2; PDBTitle: structure of integrin alphaxbeta2 ectodomain 49 d1k8wa5 not modelled 7.7 16 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 50 d2ob5a1 not modelled 7.7 21 Fold:RbsD-like Superfamily:RbsD-like Family:RbsD-like 51 d1o51a_ not modelled 7.7 15 Fold:Ferredoxin-like Superfamily:GlnB-like Family:DUF190/COG1993 52 c3r84O_ not modelled 7.5 19 PDB header:transcription Chain: O: PDB Molecule:mediator of rna polymerase ii transcription subunit 11; PDBTitle: structure of the mediator head subcomplex med11/22 53 c2g5xA_ not modelled 7.5 23 PDB header:hydrolase Chain: A: PDB Molecule:ribosome-inactivating protein; PDBTitle: crystal structure of lychnin a type 1 ribosome inactivating2 protein (rip) 54 d1cb0a_ not modelled 7.3 18 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 55 d2f2ab2 not modelled 7.3 22 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:GatB/GatE catalytic domain-like 56 d1tf5a1 not modelled 7.3 38 Fold:Pre-protein crosslinking domain of SecA Superfamily:Pre-protein crosslinking domain of SecA Family:Pre-protein crosslinking domain of SecA 57 d1a79a1 not modelled 7.3 21 Fold:Restriction endonuclease-like Superfamily:tRNA-intron endonuclease catalytic domain-like Family:tRNA-intron endonuclease catalytic domain-like 58 c1keeH_ not modelled 7.2 42 PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin 59 d1ogda_ not modelled 7.2 17 Fold:RbsD-like Superfamily:RbsD-like Family:RbsD-like 60 c2v4uA_ not modelled 7.1 21 PDB header:ligase Chain: A: PDB Molecule:ctp synthase 2; PDBTitle: human ctp synthetase 2 - glutaminase domain in complex with2 5-oxo-l-norleucine 61 c3epyA_ not modelled 7.0 22 PDB header:lipid binding protein Chain: A: PDB Molecule:acyl-coa-binding domain-containing protein 7; PDBTitle: crystal structure of human acyl-coa binding domain 72 complexed with palmitoyl-coa 62 d1wv8a1 not modelled 7.0 11 Fold:TTHA1013/TTHA0281-like Superfamily:TTHA1013/TTHA0281-like Family:TTHA1013-like 63 c2dzlA_ not modelled 6.7 38 PDB header:structural genomics unknown function Chain: A: PDB Molecule:protein fam100b; PDBTitle: solution structure of the uba domain in human protein2 fam100b 64 c2copA_ not modelled 6.7 26 PDB header:lipid binding protein Chain: A: PDB Molecule:acyl-coenzyme a binding domain containing 6; PDBTitle: solution structure of rsgi ruh-040, an acbp domain from2 human cdna 65 d1ce7a_ not modelled 6.5 25 Fold:Ribosome inactivating proteins (RIP) Superfamily:Ribosome inactivating proteins (RIP) Family:Plant cytotoxins 66 c2pebB_ not modelled 6.4 30 PDB header:oxidoreductase Chain: B: PDB Molecule:putative dioxygenase; PDBTitle: crystal structure of a putative dioxygenase (npun_f1925) from nostoc2 punctiforme pcc 73102 at 1.46 a resolution 67 c3mk9A_ not modelled 6.4 25 PDB header:hydrolase Chain: A: PDB Molecule:ricin; PDBTitle: stabilized ricin immunogen 1-33/44-198 68 c3mvkA_ not modelled 6.4 18 PDB header:isomerase Chain: A: PDB Molecule:protein fucu; PDBTitle: the crystal structure of fucu from bifidobacterium longum to 1.65a 69 c1a79B_ not modelled 6.3 21 PDB header:endonuclease Chain: B: PDB Molecule:trna endonuclease; PDBTitle: crystal structure of the trna splicing endonuclease from2 methanococcus jannaschii 70 d2olra2 not modelled 6.1 14 Fold:PEP carboxykinase N-terminal domain Superfamily:PEP carboxykinase N-terminal domain Family:PEP carboxykinase N-terminal domain 71 d1gtfa_ not modelled 6.1 32 Fold:Double-stranded beta-helix Superfamily:TRAP-like Family:Trp RNA-binding attenuation protein (TRAP) 72 d1kska3 not modelled 6.1 56 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 73 d1i96v_ not modelled 6.1 23 Fold:IF3-like Superfamily:Translation initiation factor IF3, C-terminal domain Family:Translation initiation factor IF3, C-terminal domain 74 c3icgD_ not modelled 6.0 8 PDB header:hydrolase Chain: D: PDB Molecule:endoglucanase d; PDBTitle: crystal structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans 75 c2i1vB_ not modelled 5.7 10 PDB header:transferase, hydrolase Chain: B: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6- PDBTitle: crystal structure of pfkfb3 in complex with adp and2 fructose-2,6-bisphosphate 76 d1rxxa_ not modelled 5.7 18 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Arginine deiminase 77 c2z5sN_ not modelled 5.6 11 PDB header:cell cycle Chain: N: PDB Molecule:mdm4 protein; PDBTitle: molecular basis for the inhibition of p53 by mdmx 78 c2g5iB_ not modelled 5.6 22 PDB header:ligase Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase PDBTitle: structure of trna-dependent amidotransferase gatcab2 complexed with adp-alf4 79 d1t4aa_ not modelled 5.4 21 Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase 80 c3al0B_ not modelled 5.3 22 PDB header:ligase/rna Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b; PDBTitle: crystal structure of the glutamine transamidosome from thermotoga2 maritima in the glutamylation state. 81 c2yx5A_ not modelled 5.2 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0062 protein mj1593; PDBTitle: crystal structure of methanocaldococcus jannaschii purs, one of the2 subunits of formylglycinamide ribonucleotide amidotransferase in the3 purine biosynthetic pathway 82 d1p8ja1 not modelled 5.2 18 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Proprotein convertase P-domain 83 d2q3na1 not modelled 5.2 13 Fold:Ribosome inactivating proteins (RIP) Superfamily:Ribosome inactivating proteins (RIP) Family:Plant cytotoxins

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0