Phyre 2 alignment of P0A6M4 with d1tf5a1

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Job Description | P0A6M4
Confidence | 7.29% | Date | Thu Jan 5 11:03:33 GMT 2012
Rank | 56 | Aligned Residues | 21
% Identity | 38% | Template | d1tf5a1
SCOP info | Pre-protein crosslinking domain of SecA | Pre-protein crosslinking domain of SecA | Pre-protein crosslinking domain of SecA
Resolution | 2.18

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | G | G | S | V | L | V | V | S | Q | F | T | L | A | A | D | T | E | R | G | M | R | P | S
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |
Template Sequence |  | D | G | Q | V | V | I | V | D | S | F | T | . | . | G | R | L | M | K | G | R | R | Y | S
Template Known Secondary structure |  | T | T |  |  |  |  | B |  | T | T | T | . | . |  |  | B |  | T | T |  |  |  | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 310 | . | . | . | . | . | . | . | . | . | 320 |  |  | . | . | . | . | . | . | . | . | . | 330

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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