Phyre 2 alignment of P0A6M4 with c3r84O_

Return to main results | Retrieve Phyre Job Id

Job Description | P0A6M4
Confidence | 7.51% | Date | Thu Jan 5 11:03:33 GMT 2012
Rank | 52 | Aligned Residues | 26
% Identity | 19% | Template | c3r84O_
PDB info | PDB header:transcription | Chain: O: PDB Molecule:mediator of rna polymerase ii transcription subunit 11; | PDBTitle: structure of the mediator head subcomplex med11/22
Resolution | 2.05 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 79 | 80 | . | . | . | . | . | . | . | . | . |  |  |  | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | F | T | L | A | A | D | T | E | R | G | M | . | . | . | R | P | S | F | S | K | G | A | S | P | D | R | A | E | A | L | Y | D | Y | F
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template Sequence |  | T | F | I | F | G | E | L | K | R | G | N | E | S | V | K | P | Q | F | E | . | . | . | . | . | N | H | V | K | Q | F | Y | E | R | L
Template Known Secondary structure |  |  |  |  |  |  |  |  |  | T | T |  | G | G | G |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 31 | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . |  |  |  |  |  | 50 | . | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions