Phyre 2 alignment of P0A6M4 with c2cv8A_

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Job Description | P0A6M4
Confidence | 4.88% | Date | Thu Jan 5 11:03:33 GMT 2012
Rank | 86 | Aligned Residues | 24
% Identity | 25% | Template | c2cv8A_
PDB info | PDB header:hydrolase | Chain: A: PDB Molecule:trna-splicing endonuclease; | PDBTitle: crystal structure of trna-intron endonuclease from2 sulfolobus tokodaii
Resolution | 2.80 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 108 | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . |  | . | . | . | . | . | . | 130 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |
Query Sequence |  | Y | F | V | E | R | C | R | Q | Q | E | M | N | T | Q | T | G | . | R | F | A | A | D | M | Q | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | S | V | Y | E | D | L | R | E | K | G | Y | V | V | R | S | G | I | K | Y | G | A | D | F | A | V
Template Known Secondary structure |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  | G | G | G | T | S | S |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 92 | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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