Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	Q	P	M	P	G	K	P	A	E	D	A	E	N	E	L	D	I	R	G	L	F	R	T	L	W	A	G	K	L	W	I	I	G	M	G	L	A	F	A	L	I	A	L	A	Y	T	F	F	A	R	Q	E	W	S	S	T	A	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																																					?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	D	R	P	T	V	N	M	L	G	G	Y	Y	S	Q	Q	Q	F	L	R	N	L	D	V	R	S	N	M	A	S	A	D	Q	P	S	V	M	D	E	A	Y	K	E	F	V	M	Q	L	A	S	W	D	T	R	R	E	F	W	L	Q
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?	?	?	?	?	?	?	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	D	Y	Y	K	Q	R	M	V	G	N	S	K	A	D	A	A	L	L	D	E	M	I	N	N	I	Q	F	I	P	G	D	F	T	R	A	V	N	D	S	V	K	L	I	A	E	T	A	P	D	A	N	N	L	L	R	Q	Y	V	A
Secondary structure
SS confidence
Disorder			?	?	?	?			?	?	?	?	?	?	?												?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	A	S	Q	R	A	A	S	H	L	N	D	E	L	K	G	A	W	A	A	R	T	I	Q	M	K	A	Q	V	K	R	Q	E	E	V	A	K	A	I	Y	D	R	R	M	N	S	I	E	Q	A	L	K	I	A	E	Q	H	N	I	S
Secondary structure
SS confidence
Disorder																																																										?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		R	S	A	T	D	V	P	A	E	E	L	P	D	S	E	M	F	L	L	G	R	P	M	L	Q	A	R	L	E	N	L	Q	A	V	G	P	A	F	D	L	D	Y	D	Q	N	R	A	M	L	N	T	L	N	V	G	P	T	L	D	P
Secondary structure
SS confidence
Disorder		?		?	?	?	?	?	?	?	?	?	?	?	?	?				?	?													?	?	?	?	?	?	?	?																	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Sequence		R	F	Q	T	Y	R	Y	L	R	T	P	E	E	P	V	K	R	D	S	P	R	R	A	F	L	M	I	M	W	G	I	V	G	G	L	I	G	A	G	V	A	L	T	R	R	C	S	K
Secondary structure
SS confidence
Disorder		?	?	?	?		?	?		?	?	?	?	?	?	?	?	?	?	?																												?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3b8m chain A domain 1 Region: 54 - 314 Aligned: 249 Modelled: 261 Confidence: 99.7% Identity: 18% Fold: Ferredoxin-like Superfamily: Bacterial polysaccharide co-polymerase-like Family: FepE-like Phyre2 PDB 3b8o chain A domain 1 Region: 54 - 318 Aligned: 221 Modelled: 229 Confidence: 99.6% Identity: 94% Fold: Ferredoxin-like Superfamily: Bacterial polysaccharide co-polymerase-like Family: FepE-like Phyre2 PDB 3b8p chain A domain 1 Region: 54 - 320 Aligned: 206 Modelled: 212 Confidence: 99.2% Identity: 26% Fold: Ferredoxin-like Superfamily: Bacterial polysaccharide co-polymerase-like Family: FepE-like Phyre2 PDB 2yl4 chain A Region: 18 - 50 Aligned: 33 Modelled: 33 Confidence: 67.4% Identity: 6% PDB header:membrane protein Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10, PDBTitle: structure of the human mitochondrial abc transporter, abcb10 Phyre2 PDB 2hyd chain A domain 2 Region: 19 - 50 Aligned: 32 Modelled: 32 Confidence: 60.3% Identity: 9% Fold: ABC transporter transmembrane region Superfamily: ABC transporter transmembrane region Family: ABC transporter transmembrane region Phyre2 PDB 2rmz chain A Region: 314 - 343 Aligned: 28 Modelled: 30 Confidence: 56.7% Identity: 18% PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-3; PDBTitle: bicelle-embedded integrin beta3 transmembrane segment Phyre2 PDB 2hyd chain B Region: 19 - 50 Aligned: 32 Modelled: 32 Confidence: 46.8% Identity: 9% PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 Phyre2 PDB 1pf4 chain A domain 2 Region: 18 - 50 Aligned: 33 Modelled: 33 Confidence: 43.5% Identity: 18% Fold: ABC transporter transmembrane region Superfamily: ABC transporter transmembrane region Family: ABC transporter transmembrane region Phyre2 PDB 1pw4 chain A Region: 3 - 46 Aligned: 38 Modelled: 44 Confidence: 43.4% Identity: 18% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: Glycerol-3-phosphate transporter Phyre2 PDB 3hd7 chain A Region: 24 - 50 Aligned: 27 Modelled: 27 Confidence: 39.0% Identity: 19% PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 Phyre2 PDB 3ij4 chain A Region: 316 - 338 Aligned: 23 Modelled: 23 Confidence: 35.2% Identity: 30% PDB header:transport protein Chain: A: PDB Molecule:amiloride-sensitive cation channel 2, neuronal; PDBTitle: cesium sites in the crystal structure of a functional acid2 sensing ion channel in the desensitized state Phyre2 PDB 3b60 chain A domain 2 Region: 19 - 50 Aligned: 32 Modelled: 32 Confidence: 32.1% Identity: 34% Fold: ABC transporter transmembrane region Superfamily: ABC transporter transmembrane region Family: ABC transporter transmembrane region Phyre2 PDB 3g5u chain B Region: 17 - 52 Aligned: 36 Modelled: 36 Confidence: 29.8% Identity: 14% PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Phyre2 PDB 2knc chain A Region: 30 - 51 Aligned: 22 Modelled: 22 Confidence: 27.8% Identity: 14% PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex Phyre2 PDB 2r6g chain F domain 1 Region: 23 - 55 Aligned: 33 Modelled: 33 Confidence: 22.8% Identity: 15% Fold: MalF N-terminal region-like Superfamily: MalF N-terminal region-like Family: MalF N-terminal region-like Phyre2 PDB 2qts chain A Region: 316 - 345 Aligned: 30 Modelled: 30 Confidence: 21.1% Identity: 23% PDB header:membrane protein Chain: A: PDB Molecule:acid-sensing ion channel; PDBTitle: structure of an acid-sensing ion channel 1 at 1.9 a resolution and low2 ph Phyre2 PDB 3b5w chain E Region: 19 - 50 Aligned: 32 Modelled: 32 Confidence: 21.1% Identity: 34% PDB header:membrane protein Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of eschericia coli msba Phyre2 PDB 2y69 chain Z Region: 313 - 342 Aligned: 30 Modelled: 30 Confidence: 20.7% Identity: 20% PDB header:electron transport Chain: Z: PDB Molecule:cytochrome c oxidase polypeptide 8h; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen Phyre2 PDB 1v54 chain M Region: 313 - 342 Aligned: 30 Modelled: 30 Confidence: 20.4% Identity: 20% Fold: Single transmembrane helix Superfamily: Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Family: Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Phyre2 PDB 2yvx chain D Region: 22 - 50 Aligned: 29 Modelled: 29 Confidence: 19.5% Identity: 14% PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte Phyre2 1 d3b8ma1 2 d3b8oa1 3 d3b8pa1 4 c2yl4A_ 5 d2hyda2 6 c2rmzA_ 7 c2hydB_ 8 d1pf4a2 9 d1pw4a_ 10 c3hd7A_ 11 c3ij4A_ 12 d3b60a2 13 c3g5uB_ 14 c2kncA_ 15 d2r6gf1 16 c2qtsA_ 17 c3b5wE_ 18 c2y69Z_ 19 d1v54m_ 20 c2yvxD_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d3b8ma1 99.7 18 Fold:Ferredoxin-like Superfamily:Bacterial polysaccharide co-polymerase-like Family:FepE-like 2 d3b8oa1 99.6 94 Fold:Ferredoxin-like Superfamily:Bacterial polysaccharide co-polymerase-like Family:FepE-like 3 d3b8pa1 99.2 26 Fold:Ferredoxin-like Superfamily:Bacterial polysaccharide co-polymerase-like Family:FepE-like 4 c2yl4A_ 67.4 6 PDB header:membrane protein Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10, PDBTitle: structure of the human mitochondrial abc transporter, abcb10 5 d2hyda2 60.3 9 Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region 6 c2rmzA_ 56.7 18 PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-3; PDBTitle: bicelle-embedded integrin beta3 transmembrane segment 7 c2hydB_ 46.8 9 PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 8 d1pf4a2 43.5 18 Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region 9 d1pw4a_ 43.4 18 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter 10 c3hd7A_ 39.0 19 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 11 c3ij4A_ 35.2 30 PDB header:transport protein Chain: A: PDB Molecule:amiloride-sensitive cation channel 2, neuronal; PDBTitle: cesium sites in the crystal structure of a functional acid2 sensing ion channel in the desensitized state 12 d3b60a2 32.1 34 Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region 13 c3g5uB_ 29.8 14 PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding 14 c2kncA_ 27.8 14 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 15 d2r6gf1 22.8 15 Fold:MalF N-terminal region-like Superfamily:MalF N-terminal region-like Family:MalF N-terminal region-like 16 c2qtsA_ 21.1 23 PDB header:membrane protein Chain: A: PDB Molecule:acid-sensing ion channel; PDBTitle: structure of an acid-sensing ion channel 1 at 1.9 a resolution and low2 ph 17 c3b5wE_ 21.1 34 PDB header:membrane protein Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of eschericia coli msba 18 c2y69Z_ 20.7 20 PDB header:electron transport Chain: Z: PDB Molecule:cytochrome c oxidase polypeptide 8h; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 19 d1v54m_ 20.4 20 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Family:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) 20 c2yvxD_ 19.5 14 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 21 c2k21A_ not modelled 16.5 19 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 22 d1xrda1 not modelled 16.5 16 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 23 d1rhzb_ not modelled 15.9 15 Fold:Single transmembrane helix Superfamily:Preprotein translocase SecE subunit Family:Preprotein translocase SecE subunit 24 c2e75E_ not modelled 15.8 17 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus 25 d2e74e1 not modelled 15.8 17 Fold:Single transmembrane helix Superfamily:PetL subunit of the cytochrome b6f complex Family:PetL subunit of the cytochrome b6f complex 26 c1vf5R_ not modelled 15.8 17 PDB header:photosynthesis Chain: R: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 27 c2e76E_ not modelled 15.8 17 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 28 c2e74E_ not modelled 15.8 17 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus 29 d1v54d_ not modelled 15.1 5 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit IV Family:Mitochondrial cytochrome c oxidase subunit IV 30 c2y69Q_ not modelled 14.8 5 PDB header:electron transport Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 31 c3b5xB_ not modelled 13.4 19 PDB header:membrane protein Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae 32 c1vf5E_ not modelled 13.4 18 PDB header:photosynthesis Chain: E: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 33 c3ixzB_ not modelled 11.9 19 PDB header:hydrolase Chain: B: PDB Molecule:potassium-transporting atpase subunit beta; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 34 c2k1aA_ not modelled 11.8 14 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 35 c3arct_ not modelled 11.4 14 PDB header:electron transport, photosynthesis Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 36 c3k07A_ not modelled 11.1 10 PDB header:transport protein Chain: A: PDB Molecule:cation efflux system protein cusa; PDBTitle: crystal structure of cusa 37 d2alea1 not modelled 10.0 22 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 38 d1ctja_ not modelled 9.8 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 39 c3si5X_ not modelled 9.8 25 PDB header:cell cycle Chain: X: PDB Molecule:protein casc5; PDBTitle: kinetochore-bubr1 kinase complex 40 c2kncB_ not modelled 9.8 12 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 41 c2l2tA_ not modelled 9.6 30 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain 42 c2o01L_ not modelled 9.2 27 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem i reaction center subunit xi, PDBTitle: the structure of a plant photosystem i supercomplex at 3.42 angstrom resolution 43 d1c6ra_ not modelled 8.8 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 44 d1v54g_ not modelled 8.5 8 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIa Family:Mitochondrial cytochrome c oxidase subunit VIa 45 d1xmec1 not modelled 8.4 21 Fold:Single transmembrane helix Superfamily:Bacterial ba3 type cytochrome c oxidase subunit IIa Family:Bacterial ba3 type cytochrome c oxidase subunit IIa 46 d1nwaa_ not modelled 8.4 19 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 47 c1nwaA_ not modelled 8.4 19 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra; PDBTitle: structure of mycobacterium tuberculosis methionine2 sulfoxide reductase a in complex with protein-bound3 methionine 48 c2wwbB_ not modelled 8.2 21 PDB header:ribosome Chain: B: PDB Molecule:protein transport protein sec61 subunit gamma; PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the2 actively translating wheat germ 80s ribosome 49 d1y5ic1 not modelled 7.8 34 Fold:Heme-binding four-helical bundle Superfamily:Respiratory nitrate reductase 1 gamma chain Family:Respiratory nitrate reductase 1 gamma chain 50 c3b8eB_ not modelled 7.7 20 PDB header:hydrolase/transport protein Chain: B: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump 51 c3sc0A_ not modelled 7.5 12 PDB header:oxidoreductase Chain: A: PDB Molecule:methylmalonic aciduria and homocystinuria type c protein; PDBTitle: crystal structure of mmachc (1-238), a human b12 processing enzyme,2 complexed with methylcobalamin 52 c1kqfB_ not modelled 7.5 13 PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli 53 c3ghfA_ not modelled 7.4 26 PDB header:cell cycle Chain: A: PDB Molecule:septum site-determining protein minc; PDBTitle: crystal structure of the septum site-determining protein2 minc from salmonella typhimurium 54 c2kvlA_ not modelled 7.3 11 PDB header:viral protein Chain: A: PDB Molecule:major outer capsid protein vp7; PDBTitle: nmr structure of the c-terminal domain of vp7 55 c2wwbC_ not modelled 7.3 16 PDB header:ribosome Chain: C: PDB Molecule:protein transport protein sec61 subunit beta; PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the2 actively translating wheat germ 80s ribosome 56 c1fvaA_ not modelled 7.1 12 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: crystal structure of bovine methionine sulfoxide reductase 57 c2j89A_ not modelled 7.1 31 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine sulfoxide reductase a; PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases 58 c3bqhA_ not modelled 7.1 6 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb; PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form) 59 c2k1lA_ not modelled 7.0 21 PDB header:signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3 60 c2k1kB_ not modelled 7.0 21 PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3 61 c2k1lB_ not modelled 7.0 21 PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3 62 c2k1kA_ not modelled 7.0 21 PDB header:signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3 63 c2ht2B_ not modelled 6.9 21 PDB header:membrane protein Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca; PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex 64 d1ff3c_ not modelled 6.8 13 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 65 d1v54l_ not modelled 6.7 19 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Family:Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) 66 d1fvga_ not modelled 6.7 12 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 67 c1ps9A_ not modelled 6.6 13 PDB header:oxidoreductase Chain: A: PDB Molecule:2,4-dienoyl-coa reductase; PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase 68 c1xl6B_ not modelled 6.6 6 PDB header:metal transport Chain: B: PDB Molecule:inward rectifier potassium channel; PDBTitle: intermediate gating structure 2 of the inwardly rectifying k+ channel2 kirbac3.1 69 d1jr1a4 not modelled 6.6 21 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 70 d1ff3a_ not modelled 6.5 12 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 71 c1amlA_ not modelled 6.5 33 PDB header:serine protease inhibitor Chain: A: PDB Molecule:amyloid a4; PDBTitle: the alzheimer`s disease amyloid a4 peptide (residues 1-40) 72 c3pilA_ not modelled 6.5 12 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form 73 d1cpca_ not modelled 6.3 8 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 74 c3a0bx_ not modelled 6.1 17 PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of br-substituted photosystem ii complex 75 c3a0bX_ not modelled 6.1 17 PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of br-substituted photosystem ii complex 76 c3a0hX_ not modelled 6.1 17 PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of i-substituted photosystem ii complex 77 c3a0hx_ not modelled 6.1 17 PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of i-substituted photosystem ii complex 78 d1xk4c1 not modelled 6.0 11 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 79 d1otsa_ not modelled 6.0 22 Fold:Clc chloride channel Superfamily:Clc chloride channel Family:Clc chloride channel 80 d1jboa_ not modelled 6.0 5 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 81 c3dmiA_ not modelled 5.9 11 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c6; PDBTitle: crystallization and structural analysis of cytochrome c62 from the diatom phaeodactylum tricornutum at 1.5 a3 resolution 82 d2i5nh2 not modelled 5.8 11 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 83 c2l9uA_ not modelled 5.8 16 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3; PDBTitle: spatial structure of dimeric erbb3 transmembrane domain 84 c2kluA_ not modelled 5.7 15 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 85 c2gqcA_ not modelled 5.7 23 PDB header:hydrolase Chain: A: PDB Molecule:rhomboid intramembrane protease; PDBTitle: solution structure of the n-terminal domain of rhomboid intramembrane2 protease from p. aeruginosa 86 c1s5lx_ not modelled 5.6 17 PDB header:photosynthesis Chain: X: PDB Molecule:photosystem ii psbx protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 87 c1kveA_ not modelled 5.6 31 PDB header:toxin Chain: A: PDB Molecule:smk toxin; PDBTitle: killer toxin from halotolerant yeast 88 c3kdpG_ not modelled 5.6 25 PDB header:hydrolase Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 89 c3kdpH_ not modelled 5.6 25 PDB header:hydrolase Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 90 c2k9yB_ not modelled 5.6 25 PDB header:transferase Chain: B: PDB Molecule:ephrin type-a receptor 2; PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0 91 c2k9yA_ not modelled 5.6 25 PDB header:transferase Chain: A: PDB Molecule:ephrin type-a receptor 2; PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0 92 c1ql1A_ not modelled 5.5 26 PDB header:virus Chain: A: PDB Molecule:pf1 bacteriophage coat protein b; PDBTitle: inovirus (filamentous bacteriophage) strain pf1 major coat2 protein assembly 93 c1ronA_ not modelled 5.5 19 PDB header:neuropeptide Chain: A: PDB Molecule:neuropeptide y; PDBTitle: nmr solution structure of human neuropeptide y 94 d1f1fa_ not modelled 5.4 14 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 95 c3e0mB_ not modelled 5.3 19 PDB header:oxidoreductase Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb PDBTitle: crystal structure of fusion protein of msra and msrb 96 d2guka1 not modelled 5.3 38 Fold:PG1857-like Superfamily:PG1857-like Family:PG1857-like 97 d1gdva_ not modelled 5.3 10 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 98 d1w36c3 not modelled 5.3 25 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Exodeoxyribonuclease V beta chain (RecC), C-terminal domain 99 c3dr0B_ not modelled 5.2 8 PDB header:electron transport Chain: B: PDB Molecule:cytochrome c6; PDBTitle: structure of reduced cytochrome c6 from synechococcus sp.2 pcc 7002

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0