Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	N	L	T	G	T	D	K	S	V	I	L	L	M	T	I	G	E	D	R	A	A	E	V	F	K	H	L	S	Q	R	E	V	Q	T	L	S	A	A	M	A	N	V	T	Q	I	S	N	K	Q	L	T	D	V	L	A	E	F	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?																																						?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	E	A	E	Q	F	A	A	L	N	I	N	A	N	D	Y	L	R	S	V	L	V	K	A	L	G	E	E	R	A	A	S	L	L	E	D	I	L	E	T	R	D	T	A	S	G	I	E	T	L	N	F	M	E	P	Q	S	A	A	D
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?	?	?	?										?	?	?													?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	I	R	D	E	H	P	Q	I	I	A	T	I	L	V	H	L	K	R	A	Q	A	A	D	I	L	A	L	F	D	E	R	L	R	H	D	V	M	L	R	I	A	T	F	G	G	V	Q	P	A	A	L	A	E	L	T	E	V	L	N
Secondary structure
SS confidence
Disorder																		?											?	?															?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	L	L	D	G	Q	N	L	K	R	S	K	M	G	G	V	R	T	A	A	E	I	I	N	L	M	K	T	Q	Q	E	E	A	V	I	T	A	V	R	E	F	D	G	E	L	A	Q	K	I	I	D	E	M	F	L	F	E	N	L	V
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?	?	?	?	?	?	?											?												?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		D	V	D	D	R	S	I	Q	R	L	L	Q	E	V	D	S	E	S	L	L	I	A	L	K	G	A	E	Q	P	L	R	E	K	F	L	R	N	M	S	Q	R	A	A	D	I	L	R	D	D	L	A	N	R	G	P	V	R	L	S	Q
Secondary structure
SS confidence
Disorder																																																					?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Sequence		V	E	N	E	Q	K	A	I	L	L	I	V	R	R	L	A	E	T	G	E	M	V	I	G	S	G	E	D	T	Y	V
Secondary structure
SS confidence
Disorder																				?	?				?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3hjl chain A Region: 2 - 322 Aligned: 319 Modelled: 321 Confidence: 100.0% Identity: 28% PDB header:proton transport Chain: A: PDB Molecule:flagellar motor switch protein flig; PDBTitle: the structure of full-length flig from aquifex aeolicus Phyre2 PDB 3pl4 chain A Region: 99 - 324 Aligned: 226 Modelled: 226 Confidence: 100.0% Identity: 31% PDB header:motor protein Chain: A: PDB Molecule:flagellar motor switch protein; PDBTitle: crystal structure of flig (residue 116-343) from h. pylori Phyre2 PDB 3pkr chain A Region: 105 - 322 Aligned: 215 Modelled: 218 Confidence: 100.0% Identity: 33% PDB header:motor protein Chain: A: PDB Molecule:flagellar motor switch protein; PDBTitle: crystal structure of flig (residue 86-343) from h. pylori Phyre2 PDB 1lkv chain X Region: 114 - 325 Aligned: 212 Modelled: 212 Confidence: 100.0% Identity: 42% Fold: alpha-alpha superhelix Superfamily: FliG Family: FliG Phyre2 PDB 1qc7 chain A Region: 233 - 331 Aligned: 99 Modelled: 99 Confidence: 100.0% Identity: 53% Fold: alpha-alpha superhelix Superfamily: FliG Family: FliG Phyre2 PDB 1qc7 chain B Region: 233 - 321 Aligned: 89 Modelled: 89 Confidence: 100.0% Identity: 54% Fold: alpha-alpha superhelix Superfamily: FliG Family: FliG Phyre2 PDB 3soh chain B Region: 112 - 191 Aligned: 80 Modelled: 80 Confidence: 99.8% Identity: 29% PDB header:motor protein Chain: B: PDB Molecule:flagellar motor switch protein flig; PDBTitle: architecture of the flagellar rotor Phyre2 PDB 2oux chain A domain 1 Region: 108 - 233 Aligned: 116 Modelled: 126 Confidence: 98.5% Identity: 15% Fold: alpha-alpha superhelix Superfamily: MgtE N-terminal domain-like Family: MgtE N-terminal domain-like Phyre2 PDB 2oux chain B Region: 108 - 233 Aligned: 116 Modelled: 126 Confidence: 98.3% Identity: 15% PDB header:transport protein Chain: B: PDB Molecule:magnesium transporter; PDBTitle: crystal structure of the soluble part of a magnesium transporter Phyre2 PDB 2yvx chain A domain 1 Region: 110 - 233 Aligned: 115 Modelled: 124 Confidence: 98.1% Identity: 14% Fold: alpha-alpha superhelix Superfamily: MgtE N-terminal domain-like Family: MgtE N-terminal domain-like Phyre2 PDB 2yvx chain D Region: 108 - 229 Aligned: 101 Modelled: 107 Confidence: 96.7% Identity: 21% PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte Phyre2 PDB 2yvz chain A Region: 108 - 214 Aligned: 107 Modelled: 107 Confidence: 96.6% Identity: 17% PDB header:transport protein Chain: A: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte cytosolic domain,2 mg2+-free form Phyre2 PDB 3b37 chain A Region: 38 - 179 Aligned: 134 Modelled: 142 Confidence: 94.3% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:aminopeptidase n; PDBTitle: crystal structure of e. coli aminopeptidase n in complex with tyrosine Phyre2 PDB 2kn6 chain A Region: 106 - 230 Aligned: 123 Modelled: 125 Confidence: 87.2% Identity: 13% PDB header:apoptosis Chain: A: PDB Molecule:apoptosis-associated speck-like protein containing a card; PDBTitle: structure of full-length human asc (apoptosis-associated speck-like2 protein containing a card) Phyre2 PDB 3ebh chain A Region: 18 - 181 Aligned: 153 Modelled: 164 Confidence: 78.2% Identity: 8% PDB header:hydrolase inhibitor Chain: A: PDB Molecule:m1 family aminopeptidase; PDBTitle: structure of the m1 alanylaminopeptidase from malaria complexed with2 bestatin Phyre2 PDB 1hjp chain A Region: 17 - 97 Aligned: 81 Modelled: 81 Confidence: 76.2% Identity: 12% PDB header:dna recombination Chain: A: PDB Molecule:ruva; PDBTitle: holliday junction binding protein ruva from e. coli Phyre2 PDB 1d8l chain A Region: 17 - 68 Aligned: 52 Modelled: 52 Confidence: 72.0% Identity: 13% PDB header:gene regulation Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva); PDBTitle: e. coli holliday junction binding protein ruva nh2 region2 lacking domain iii Phyre2 PDB 1cuk chain A domain 2 Region: 17 - 68 Aligned: 52 Modelled: 52 Confidence: 70.9% Identity: 13% Fold: SAM domain-like Superfamily: RuvA domain 2-like Family: DNA helicase RuvA subunit, middle domain Phyre2 PDB 1ixr chain A domain 1 Region: 17 - 59 Aligned: 43 Modelled: 43 Confidence: 56.9% Identity: 16% Fold: SAM domain-like Superfamily: RuvA domain 2-like Family: DNA helicase RuvA subunit, middle domain Phyre2 PDB 2h5x chain A Region: 17 - 112 Aligned: 91 Modelled: 96 Confidence: 56.6% Identity: 12% PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva; PDBTitle: ruva from mycobacterium tuberculosis Phyre2 1 c3hjlA_ 2 c3pl4A_ 3 c3pkrA_ 4 d1lkvx_ 5 d1qc7a_ 6 d1qc7b_ 7 c3sohB_ 8 d2ouxa1 9 c2ouxB_ 10 d2yvxa1 11 c2yvxD_ 12 c2yvzA_ 13 c3b37A_ 14 c2kn6A_ 15 c3ebhA_ 16 c1hjpA_ 17 c1d8lA_ 18 d1cuka2 19 d1ixra1 20 c2h5xA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3hjlA_ 100.0 28 PDB header:proton transport Chain: A: PDB Molecule:flagellar motor switch protein flig; PDBTitle: the structure of full-length flig from aquifex aeolicus 2 c3pl4A_ 100.0 31 PDB header:motor protein Chain: A: PDB Molecule:flagellar motor switch protein; PDBTitle: crystal structure of flig (residue 116-343) from h. pylori 3 c3pkrA_ 100.0 33 PDB header:motor protein Chain: A: PDB Molecule:flagellar motor switch protein; PDBTitle: crystal structure of flig (residue 86-343) from h. pylori 4 d1lkvx_ 100.0 42 Fold:alpha-alpha superhelix Superfamily:FliG Family:FliG 5 d1qc7a_ 100.0 53 Fold:alpha-alpha superhelix Superfamily:FliG Family:FliG 6 d1qc7b_ 100.0 54 Fold:alpha-alpha superhelix Superfamily:FliG Family:FliG 7 c3sohB_ 99.8 29 PDB header:motor protein Chain: B: PDB Molecule:flagellar motor switch protein flig; PDBTitle: architecture of the flagellar rotor 8 d2ouxa1 98.5 15 Fold:alpha-alpha superhelix Superfamily:MgtE N-terminal domain-like Family:MgtE N-terminal domain-like 9 c2ouxB_ 98.3 15 PDB header:transport protein Chain: B: PDB Molecule:magnesium transporter; PDBTitle: crystal structure of the soluble part of a magnesium transporter 10 d2yvxa1 98.1 14 Fold:alpha-alpha superhelix Superfamily:MgtE N-terminal domain-like Family:MgtE N-terminal domain-like 11 c2yvxD_ 96.7 21 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 12 c2yvzA_ 96.6 17 PDB header:transport protein Chain: A: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte cytosolic domain,2 mg2+-free form 13 c3b37A_ 94.3 14 PDB header:hydrolase Chain: A: PDB Molecule:aminopeptidase n; PDBTitle: crystal structure of e. coli aminopeptidase n in complex with tyrosine 14 c2kn6A_ 87.2 13 PDB header:apoptosis Chain: A: PDB Molecule:apoptosis-associated speck-like protein containing a card; PDBTitle: structure of full-length human asc (apoptosis-associated speck-like2 protein containing a card) 15 c3ebhA_ 78.2 8 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:m1 family aminopeptidase; PDBTitle: structure of the m1 alanylaminopeptidase from malaria complexed with2 bestatin 16 c1hjpA_ 76.2 12 PDB header:dna recombination Chain: A: PDB Molecule:ruva; PDBTitle: holliday junction binding protein ruva from e. coli 17 c1d8lA_ 72.0 13 PDB header:gene regulation Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva); PDBTitle: e. coli holliday junction binding protein ruva nh2 region2 lacking domain iii 18 d1cuka2 70.9 13 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 19 d1ixra1 56.9 16 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 20 c2h5xA_ 56.6 12 PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva; PDBTitle: ruva from mycobacterium tuberculosis 21 d1bvsa2 not modelled 56.3 14 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 22 c2x49A_ not modelled 49.4 18 PDB header:protein transport Chain: A: PDB Molecule:invasion protein inva; PDBTitle: crystal structure of the c-terminal domain of inva 23 c1ixrA_ not modelled 49.4 16 PDB header:hydrolase Chain: A: PDB Molecule:holliday junction dna helicase ruva; PDBTitle: ruva-ruvb complex 24 d1bh9b_ not modelled 46.4 20 Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs 25 c3lk2B_ not modelled 38.7 14 PDB header:protein binding Chain: B: PDB Molecule:f-actin-capping protein subunit beta isoforms 1 and 2; PDBTitle: crystal structure of capz bound to the uncapping motif from carmil 26 d1iznb_ not modelled 34.2 14 Fold:Subunits of heterodimeric actin filament capping protein Capz Superfamily:Subunits of heterodimeric actin filament capping protein Capz Family:Capz beta-1 subunit 27 d2af7a1 not modelled 33.6 18 Fold:AhpD-like Superfamily:AhpD-like Family:CMD-like 28 d1szaa_ not modelled 28.0 8 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:RPR domain (SMART 00582 ) 29 c3kxrA_ not modelled 27.6 22 PDB header:transport protein Chain: A: PDB Molecule:magnesium transporter, putative; PDBTitle: structure of the cystathionine beta-synthase pair domain of the2 putative mg2+ transporter so5017 from shewanella oneidensis mr-1. 30 c1lj2B_ not modelled 26.2 21 PDB header:viral protein/ translation Chain: B: PDB Molecule:nonstructural rna-binding protein 34; PDBTitle: recognition of eif4g by rotavirus nsp3 reveals a basis for2 mrna circularization 31 c2w9yA_ not modelled 24.7 9 PDB header:lipid transport Chain: A: PDB Molecule:fatty acid/retinol binding protein protein 7, PDBTitle: the structure of the lipid binding protein ce-far-7 from2 caenorhabditis elegans 32 d1x2ia1 not modelled 24.2 18 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 33 c2kvcA_ not modelled 23.8 18 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a 34 c2lkyA_ not modelled 23.7 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of msmeg_1053, the second duf3349 annotated protein2 in the genome of mycobacterium smegmatis, seattle structural genomics3 center for infectious disease target mysma.17112.b 35 d1mpga1 not modelled 23.5 13 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 36 d2i0za2 not modelled 23.4 16 Fold:HI0933 insert domain-like Superfamily:HI0933 insert domain-like Family:HI0933 insert domain-like 37 c3thgA_ not modelled 20.8 3 PDB header:protein binding Chain: A: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase activase 1, PDBTitle: crystal structure of the creosote rubisco activase c-domain 38 c3dadA_ not modelled 19.6 15 PDB header:signaling protein Chain: A: PDB Molecule:fh1/fh2 domain-containing protein 1; PDBTitle: crystal structure of the n-terminal regulatory domains of2 the formin fhod1 39 d2bgwa1 not modelled 19.3 17 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 40 c8iczA_ not modelled 19.3 17 PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7)); PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar) 41 d2peoa1 not modelled 18.9 16 Fold:RbcX-like Superfamily:RbcX-like Family:RbcX-like 42 c2peoA_ not modelled 18.9 16 PDB header:chaperone Chain: A: PDB Molecule:rbcx protein; PDBTitle: crystal structure of rbcx from anabaena ca 43 c2l0kA_ not modelled 18.5 18 PDB header:transcription Chain: A: PDB Molecule:stage iii sporulation protein d; PDBTitle: nmr solution structure of a transcription factor spoiiid in complex2 with dna 44 d2d1ha1 not modelled 18.3 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:TrmB-like 45 c2ihmA_ not modelled 17.4 19 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide 46 d1bh9a_ not modelled 16.9 15 Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs 47 d1nexb1 not modelled 16.7 10 Fold:F-box domain Superfamily:F-box domain Family:F-box domain 48 d2efva1 not modelled 15.6 19 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:MJ0366-like 49 d2a0ma1 not modelled 15.4 15 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 50 d1y0na_ not modelled 14.5 19 Fold:YehU-like Superfamily:YehU-like Family:YehU-like 51 d1pzna1 not modelled 14.4 12 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 52 d1dgna_ not modelled 14.3 18 Fold:DEATH domain Superfamily:DEATH domain Family:Caspase recruitment domain, CARD 53 d1i5za1 not modelled 13.8 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like 54 c2d0sA_ not modelled 13.7 0 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus 55 d1dgsa1 not modelled 13.2 20 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 56 c1qzeA_ not modelled 13.1 15 PDB header:replication Chain: A: PDB Molecule:uv excision repair protein rad23 homolog a; PDBTitle: hhr23a protein structure based on residual dipolar coupling2 data 57 d1cc5a_ not modelled 12.4 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 58 c2jxuA_ not modelled 12.3 13 PDB header:unknown function Chain: A: PDB Molecule:terb; PDBTitle: nmr solution structure of kp-terb, a tellurite resistance2 protein from klebsiella pneumoniae 59 c2kwuA_ not modelled 12.1 9 PDB header:protein binding/signaling protein Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: solution structure of ubm2 of murine polymerase iota in complex with2 ubiquitin 60 c3hjbA_ not modelled 11.9 8 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: 1.5 angstrom crystal structure of glucose-6-phosphate isomerase from2 vibrio cholerae. 61 d1m8za_ not modelled 11.6 9 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Pumilio repeat 62 d1htaa_ not modelled 11.3 15 Fold:Histone-fold Superfamily:Histone-fold Family:Archaeal histone 63 c2gtqA_ not modelled 11.3 16 PDB header:hydrolase Chain: A: PDB Molecule:aminopeptidase n; PDBTitle: crystal structure of aminopeptidase n from human pathogen neisseria2 meningitidis 64 d1y6xa1 not modelled 11.1 12 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:HisE-like (PRA-PH) 65 d1tuza_ not modelled 11.0 20 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 66 c2qezC_ not modelled 10.8 11 PDB header:lyase Chain: C: PDB Molecule:ethanolamine ammonia-lyase heavy chain; PDBTitle: crystal structure of ethanolamine ammonia-lyase heavy chain2 (yp_013784.1) from listeria monocytogenes 4b f2365 at 2.15 a3 resolution 67 d1ffgb_ not modelled 10.2 18 Fold:Ferredoxin-like Superfamily:CheY-binding domain of CheA Family:CheY-binding domain of CheA 68 c2krcA_ not modelled 10.2 20 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit delta; PDBTitle: solution structure of the n-terminal domain of bacillus2 subtilis delta subunit of rna polymerase 69 c2l6aA_ not modelled 10.0 13 PDB header:signaling protein Chain: A: PDB Molecule:nacht, lrr and pyd domains-containing protein 12; PDBTitle: three-dimensional structure of the n-terminal effector pyrin domain of2 nlrp12 70 d2b0la1 not modelled 10.0 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CodY HTH domain 71 c3nbuC_ not modelled 10.0 8 PDB header:isomerase Chain: C: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of pgi glucosephosphate isomerase 72 d2a7wa1 not modelled 10.0 11 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:HisE-like (PRA-PH) 73 c2a7wF_ not modelled 10.0 11 PDB header:hydrolase Chain: F: PDB Molecule:phosphoribosyl-atp pyrophosphatase; PDBTitle: crystal structure of phosphoribosyl-atp pyrophosphatase2 from chromobacterium violaceum (atcc 12472). nesg target3 cvr7 74 c1a0oH_ not modelled 9.9 18 PDB header:chemotaxis Chain: H: PDB Molecule:chea; PDBTitle: chey-binding domain of chea in complex with chey 75 c3g2bA_ not modelled 9.9 14 PDB header:biosynthetic protein Chain: A: PDB Molecule:coenzyme pqq synthesis protein d; PDBTitle: crystal structure of pqqd from xanthomonas campestris 76 d1nira1 not modelled 9.7 9 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 77 c2jmkA_ not modelled 9.7 20 PDB header:protein binding Chain: A: PDB Molecule:hypothetical protein ta0956; PDBTitle: solution structure of ta0956 78 c3ka1A_ not modelled 9.7 16 PDB header:chaperone Chain: A: PDB Molecule:rbcx protein; PDBTitle: crystal structure of rbcx from thermosynechococcus elongatus 79 d1dvha_ not modelled 9.6 28 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 80 c2vckC_ not modelled 9.5 28 PDB header:oxidoreductase Chain: C: PDB Molecule:cyanobacterial phycoerythrobilin; PDBTitle: structure of phycoerythrobilin synthase pebs from the2 cyanophage p-ssm2 in complex with the bound substrate3 biliverdin ixa 81 d1hiob_ not modelled 9.3 15 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 82 d1a56a_ not modelled 9.2 11 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 83 d1p3mh_ not modelled 9.1 17 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 84 c2km6A_ not modelled 9.0 4 PDB header:signaling protein, protein binding Chain: A: PDB Molecule:nacht, lrr and pyd domains-containing protein 7; PDBTitle: nmr structure of the nlrp7 pyrin domain 85 d1c53a_ not modelled 8.9 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 86 c1cauB_ not modelled 8.8 11 PDB header:seed storage protein Chain: B: PDB Molecule:canavalin; PDBTitle: determination of three crystal structures of canavalin by molecular2 replacement 87 d2h6ca1 not modelled 8.6 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like 88 d1uija1 not modelled 8.6 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 89 c2qwwB_ not modelled 8.5 24 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution 90 c1qloA_ not modelled 8.3 33 PDB header:membrane proteins Chain: A: PDB Molecule:herpes simplex virus protein icp47; PDBTitle: structure of the active domain of the herpes simplex virus2 protein icp47 in water/sodium dodecyl sulfate solution3 determined by nuclear magnetic resonance spectroscopy 91 c2k4bA_ not modelled 8.2 15 PDB header:dna binding protein Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: copr repressor structure 92 d1huua_ not modelled 8.2 19 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 93 c2zzsW_ not modelled 8.1 22 PDB header:electron transport Chain: W: PDB Molecule: PDBTitle: crystal structure of cytochrome c554 from vibrio2 parahaemolyticus strain rimd2210633 94 c1dgrW_ not modelled 8.1 7 PDB header:plant protein Chain: W: PDB Molecule:canavalin; PDBTitle: refined crystal structure of canavalin from jack bean 95 d2phla1 not modelled 8.0 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 96 c3fgxA_ not modelled 7.8 4 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:rbstp2171; PDBTitle: structure of uncharacterised protein rbstp2171 from bacillus2 stearothermophilus 97 d1m70a2 not modelled 7.7 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 98 d1k1va_ not modelled 7.7 22 Fold:A DNA-binding domain in eukaryotic transcription factors Superfamily:A DNA-binding domain in eukaryotic transcription factors Family:A DNA-binding domain in eukaryotic transcription factors 99 d1cora_ not modelled 7.5 11 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0