Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	T	E	H	V	I	L	L	N	A	Q	G	V	P	T	G	T	L	E	K	Y	A	A	H	T	A	D	T	R	L	H	L	A	F	S	S	W	L	F	N	A	K	G	Q	L	L	V	T	R	R	A	L	S	K	K	A	W	P	G
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	W	T	N	S	V	C	G	H	P	Q	L	G	E	S	N	E	D	A	V	I	R	R	C	R	Y	E	L	G	V	E	I	T	P	P	E	S	I	Y	P	D	F	R	Y	R	A	T	D	P	S	G	I	V	E	N	E	V	C	P	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		F	A	A	R	T	T	S	A	L	Q	I	N	D	D	E	V	M	D	Y	Q	W	C	D	L	A	D	V	L	H	G	I	D	A	T	P	W	A	F	S	P	W	M	V	M	Q	A	T	N	R	E	A	R	K	R	L	S	A	F	T	Q
Secondary structure
SS confidence
Disorder																																																													?
Disorder confidence
		.	.
Sequence		L	K
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ppv chain A Region: 4 - 178 Aligned: 175 Modelled: 175 Confidence: 100.0% Identity: 100% Fold: Nudix Superfamily: Nudix Family: IPP isomerase-like Phyre2 PDB 2pny chain A Region: 1 - 182 Aligned: 182 Modelled: 182 Confidence: 100.0% Identity: 24% PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2 Phyre2 PDB 2i6k chain A Region: 1 - 182 Aligned: 182 Modelled: 182 Confidence: 100.0% Identity: 25% PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1; PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog Phyre2 PDB 1hzt chain A Region: 31 - 182 Aligned: 152 Modelled: 152 Confidence: 100.0% Identity: 100% Fold: Nudix Superfamily: Nudix Family: IPP isomerase-like Phyre2 PDB 2fkb chain A domain 1 Region: 2 - 168 Aligned: 160 Modelled: 167 Confidence: 100.0% Identity: 19% Fold: Nudix Superfamily: Nudix Family: IPP isomerase-like Phyre2 PDB 2o5f chain A domain 1 Region: 4 - 165 Aligned: 150 Modelled: 162 Confidence: 100.0% Identity: 24% Fold: Nudix Superfamily: Nudix Family: IPP isomerase-like Phyre2 PDB 3dup chain B Region: 3 - 175 Aligned: 171 Modelled: 173 Confidence: 99.9% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170 Phyre2 PDB 3n77 chain B Region: 31 - 149 Aligned: 118 Modelled: 119 Confidence: 99.9% Identity: 22% PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 Phyre2 PDB 3grn chain B Region: 28 - 167 Aligned: 132 Modelled: 140 Confidence: 99.8% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 Phyre2 PDB 1rya chain A Region: 32 - 149 Aligned: 115 Modelled: 118 Confidence: 99.8% Identity: 20% Fold: Nudix Superfamily: Nudix Family: GDP-mannose mannosyl hydrolase NudD Phyre2 PDB 1sjy chain A Region: 32 - 170 Aligned: 134 Modelled: 139 Confidence: 99.8% Identity: 17% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 2b0v chain A domain 1 Region: 32 - 167 Aligned: 130 Modelled: 134 Confidence: 99.8% Identity: 11% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3hhj chain A Region: 33 - 149 Aligned: 110 Modelled: 117 Confidence: 99.8% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae Phyre2 PDB 2azw chain A domain 1 Region: 31 - 163 Aligned: 126 Modelled: 132 Confidence: 99.8% Identity: 16% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3dku chain B Region: 32 - 179 Aligned: 140 Modelled: 148 Confidence: 99.8% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 Phyre2 PDB 2pq1 chain B Region: 32 - 179 Aligned: 130 Modelled: 142 Confidence: 99.8% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 Phyre2 PDB 2o1c chain B Region: 34 - 151 Aligned: 113 Modelled: 118 Confidence: 99.8% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase Phyre2 PDB 2kdv chain A Region: 31 - 151 Aligned: 115 Modelled: 121 Confidence: 99.8% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:rna pyrophosphohydrolase; PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli Phyre2 PDB 3h95 chain A Region: 32 - 149 Aligned: 105 Modelled: 118 Confidence: 99.8% Identity: 12% PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 Phyre2 PDB 3fk9 chain B Region: 31 - 149 Aligned: 111 Modelled: 119 Confidence: 99.8% Identity: 23% PDB header:hydrolase Chain: B: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mmutator mutt protein from bacillus2 halodurans Phyre2 1 d1ppva_ 2 c2pnyA_ 3 c2i6kA_ 4 d1hzta_ 5 d2fkba1 6 d2o5fa1 7 c3dupB_ 8 c3n77B_ 9 c3grnB_ 10 d1ryaa_ 11 d1sjya_ 12 d2b0va1 13 c3hhjA_ 14 d2azwa1 15 c3dkuB_ 16 c2pq1B_ 17 c2o1cB_ 18 c2kdvA_ 19 c3h95A_ 20 c3fk9B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ppva_ 100.0 100 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 2 c2pnyA_ 100.0 24 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2 3 c2i6kA_ 100.0 25 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1; PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog 4 d1hzta_ 100.0 100 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 5 d2fkba1 100.0 19 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 6 d2o5fa1 100.0 24 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 7 c3dupB_ 99.9 18 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170 8 c3n77B_ 99.9 22 PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 9 c3grnB_ 99.8 20 PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 10 d1ryaa_ 99.8 20 Fold:Nudix Superfamily:Nudix Family:GDP-mannose mannosyl hydrolase NudD 11 d1sjya_ 99.8 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 12 d2b0va1 99.8 11 Fold:Nudix Superfamily:Nudix Family:MutT-like 13 c3hhjA_ 99.8 19 PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae 14 d2azwa1 99.8 16 Fold:Nudix Superfamily:Nudix Family:MutT-like 15 c3dkuB_ 99.8 16 PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 16 c2pq1B_ 99.8 18 PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 17 c2o1cB_ 99.8 18 PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase 18 c2kdvA_ 99.8 17 PDB header:hydrolase Chain: A: PDB Molecule:rna pyrophosphohydrolase; PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli 19 c3h95A_ 99.8 12 PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 20 c3fk9B_ 99.8 23 PDB header:hydrolase Chain: B: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mmutator mutt protein from bacillus2 halodurans 21 c3f6aA_ not modelled 99.8 21 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens 22 d1jkna_ not modelled 99.8 16 Fold:Nudix Superfamily:Nudix Family:MutT-like 23 c2yvoA_ not modelled 99.8 17 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8 24 c3r03B_ not modelled 99.8 21 PDB header:hydrolase Chain: B: PDB Molecule:nudix hydrolase; PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum 25 d1ktga_ not modelled 99.7 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 26 d1irya_ not modelled 99.7 16 Fold:Nudix Superfamily:Nudix Family:MutT-like 27 c3gz8C_ not modelled 99.7 24 PDB header:dna binding protein Chain: C: PDB Molecule:mutt/nudix family protein; PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose 28 d1xsba_ not modelled 99.7 15 Fold:Nudix Superfamily:Nudix Family:MutT-like 29 c3exqA_ not modelled 99.7 13 PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis 30 d1vcda1 not modelled 99.7 24 Fold:Nudix Superfamily:Nudix Family:MutT-like 31 c2jvbA_ not modelled 99.7 14 PDB header:hydrolase Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2; PDBTitle: solution structure of catalytic domain of ydcp2 32 d1nqza_ not modelled 99.7 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 33 d1puna_ not modelled 99.7 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 34 c3ef5A_ not modelled 99.7 20 PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp 35 d1vk6a2 not modelled 99.7 15 Fold:Nudix Superfamily:Nudix Family:NADH pyrophosphatase 36 c2fvvA_ not modelled 99.7 12 PDB header:hydrolase Chain: A: PDB Molecule:diphosphoinositol polyphosphate phosphohydrolase PDBTitle: human diphosphoinositol polyphosphate phosphohydrolase 1 37 d2fvva1 not modelled 99.7 12 Fold:Nudix Superfamily:Nudix Family:MutT-like 38 c3fcmA_ not modelled 99.7 13 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a nudix hydrolase from clostridium2 perfringens 39 d2fb1a2 not modelled 99.7 19 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 40 c3gg6A_ not modelled 99.7 16 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 18; PDBTitle: crystal structure of the nudix domain of human nudt18 41 c2gb5B_ not modelled 99.7 16 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 42 c3edsA_ not modelled 99.7 20 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mut/nudix family protein from bacillus2 thuringiensis 43 c3sonB_ not modelled 99.7 18 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical nudix hydrolase; PDBTitle: crystal structure of a hypothetical nudix hydrolase (lmof2365_2679)2 from listeria monocytogenes (atcc 19115) at 1.70 a resolution 44 c2r5wA_ not modelled 99.7 14 PDB header:hydrolase, transferase Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase; PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis 45 c2w4eA_ not modelled 99.7 18 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans 46 c3cngC_ not modelled 99.7 16 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 47 c2qjoB_ not modelled 99.7 20 PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. 48 c3o8sA_ not modelled 99.7 16 PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution 49 d2b06a1 not modelled 99.7 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 50 d1g0sa_ not modelled 99.7 13 Fold:Nudix Superfamily:Nudix Family:MutT-like 51 c3q4iA_ not modelled 99.7 10 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ 52 c3i9xA_ not modelled 99.7 17 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from listeria innocua 53 c3gz6A_ not modelled 99.7 22 PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna 54 c3id9B_ not modelled 99.6 19 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from2 bacillus thuringiensis 55 c2yyhC_ not modelled 99.6 16 PDB header:hydrolase Chain: C: PDB Molecule:8-oxo-dgtpase domain; PDBTitle: crystal structure of nudix family protein from aquifex aeolicus 56 c3e57A_ not modelled 99.6 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein tm1382; PDBTitle: crystal structure of tm1382, a putative nudix hydrolase 57 c2fb1A_ not modelled 99.6 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron 58 c2pqvA_ not modelled 99.6 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from streptococcus2 pneumoniae 59 d1k2ea_ not modelled 99.6 16 Fold:Nudix Superfamily:Nudix Family:MutT-like 60 d2fmla2 not modelled 99.6 20 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 61 c3gwyA_ not modelled 99.6 15 PDB header:hydrolase Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase; PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis 62 c2qkmF_ not modelled 99.6 13 PDB header:hydrolase Chain: F: PDB Molecule:spac19a8.12 protein; PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex 63 d2a6ta2 not modelled 99.6 12 Fold:Nudix Superfamily:Nudix Family:mRNA decapping enzyme-like 64 d1v8ya_ not modelled 99.6 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 65 d1vhza_ not modelled 99.6 15 Fold:Nudix Superfamily:Nudix Family:MutT-like 66 c3q91D_ not modelled 99.6 15 PDB header:hydrolase Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase; PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14) 67 c3fjyB_ not modelled 99.6 17 PDB header:hydrolase Chain: B: PDB Molecule:probable mutt1 protein; PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis 68 d1x51a1 not modelled 99.5 7 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 69 d1mqea_ not modelled 99.5 14 Fold:Nudix Superfamily:Nudix Family:MutT-like 70 c3bm4B_ not modelled 99.5 17 PDB header:hydrolase Chain: B: PDB Molecule:adp-sugar pyrophosphatase; PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt52 in complex with magnesium and ampcpr 71 c2fmlB_ not modelled 99.5 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from enterococcus2 faecalis 72 c3f13A_ not modelled 99.5 15 PDB header:hydrolase Chain: A: PDB Molecule:putative nudix hydrolase family member; PDBTitle: crystal structure of putative nudix hydrolase family member2 from chromobacterium violaceum 73 d1u20a1 not modelled 99.5 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 74 d1viua_ not modelled 99.4 16 Fold:Nudix Superfamily:Nudix Family:MutT-like 75 c1rrqA_ not modelled 99.4 12 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 76 c3rh7A_ not modelled 99.4 9 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical oxidoreductase; PDBTitle: crystal structure of a hypothetical oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution 77 d1rrqa2 not modelled 99.3 15 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 78 d1q33a_ not modelled 99.3 22 Fold:Nudix Superfamily:Nudix Family:MutT-like 79 c3qsjA_ not modelled 99.3 16 PDB header:hydrolase Chain: A: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius 80 c2j8qB_ not modelled 99.2 9 PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. 81 c3couA_ not modelled 98.5 24 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16; PDBTitle: crystal structure of human nudix motif 16 (nudt16) 82 c3kvhA_ not modelled 97.6 20 PDB header:rna binding protein Chain: A: PDB Molecule:protein syndesmos; PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein) 83 c3p5tE_ not modelled 93.8 13 PDB header:rna binding protein Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; PDBTitle: cfim25-cfim68 complex 84 d2yvxa2 not modelled 52.2 10 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 85 c3brcA_ not modelled 50.6 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein of unknown function; PDBTitle: crystal structure of a conserved protein of unknown function from2 methanobacterium thermoautotrophicum 86 d2yzqa2 not modelled 42.7 24 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 87 d1jr1a4 not modelled 38.6 8 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 88 c2qh1B_ not modelled 37.6 10 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ta0289; PDBTitle: structure of ta289, a cbs-rubredoxin-like protein, in its fe+2-bound2 state 89 c1zfjA_ not modelled 29.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:inosine monophosphate dehydrogenase; PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes 90 d2b78a1 not modelled 27.5 21 Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical RNA methyltransferase domain (HRMD) 91 c1zxuA_ not modelled 25.4 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:at5g01750 protein; PDBTitle: x-ray structure of protein from arabidopsis thaliana2 at5g01750 92 d1tifa_ not modelled 24.0 30 Fold:beta-Grasp (ubiquitin-like) Superfamily:Translation initiation factor IF3, N-terminal domain Family:Translation initiation factor IF3, N-terminal domain 93 d2q4ma1 not modelled 23.1 17 Fold:Tubby C-terminal domain-like Superfamily:Tubby C-terminal domain-like Family:At5g01750-like 94 c2yvxD_ not modelled 22.1 10 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 95 c3gf8A_ not modelled 19.7 18 PDB header:carbohydrate binding protein Chain: A: PDB Molecule:putative polysaccharide binding proteins (duf1812); PDBTitle: crystal structure of putative polysaccharide binding proteins2 (duf1812) (np_809975.1) from bacteroides thetaiotaomicron vpi-5482 at3 2.20 a resolution 96 c3payB_ not modelled 19.4 24 PDB header:cell adhesion Chain: B: PDB Molecule:putative adhesin; PDBTitle: crystal structure of a putative adhesin (bacova_04077) from2 bacteroides ovatus at 2.50 a resolution 97 c2hf6A_ not modelled 16.6 13 PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit zeta-1; PDBTitle: solution structure of human zeta-cop 98 c3flcX_ not modelled 16.1 14 PDB header:transferase Chain: X: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol 99 c2eq8C_ not modelled 16.1 47 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0