Secondary structure and disorder prediction

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Sequence		N	R	G	R	R	S	G	L	K	K	L	V	R	T	S	S	A	G	N	A	L	L	V	C	K	L	N	R	L	G	R	S	M	W	H	L	V	V	L	L	E	E	L	C	E	R	G	I	N	F	R	A	L	A	Q	S	I	F	A	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?																																																				?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Sequence		Q	W	G	D	E	C	C	K	S	K	T	I	C	D	L	K	V	I	V
Secondary structure
SS confidence
Disorder			?	?	?														?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3pkz chain K Region: 1 - 64 Aligned: 64 Modelled: 64 Confidence: 99.4% Identity: 17% PDB header:recombination Chain: K: PDB Molecule:recombinase sin; PDBTitle: structural basis for catalytic activation of a serine recombinase Phyre2 PDB 3g13 chain B Region: 1 - 69 Aligned: 69 Modelled: 69 Confidence: 99.4% Identity: 14% PDB header:recombination Chain: B: PDB Molecule:putative conjugative transposon recombinase; PDBTitle: crystal structure of putative conjugative transposon recombinase from2 clostridium difficile Phyre2 PDB 2r0q chain F Region: 4 - 64 Aligned: 61 Modelled: 61 Confidence: 99.4% Identity: 18% PDB header:recombination/dna Chain: F: PDB Molecule:putative transposon tn552 dna-invertase bin3; PDBTitle: crystal structure of a serine recombinase- dna regulatory2 complex Phyre2 PDB 2rsl chain A Region: 2 - 62 Aligned: 61 Modelled: 61 Confidence: 99.2% Identity: 30% Fold: Resolvase-like Superfamily: Resolvase-like Family: gamma,delta resolvase, catalytic domain Phyre2 PDB 2gm4 chain B Region: 4 - 69 Aligned: 66 Modelled: 66 Confidence: 99.2% Identity: 29% PDB header:recombination, dna Chain: B: PDB Molecule:transposon gamma-delta resolvase; PDBTitle: an activated, tetrameric gamma-delta resolvase: hin chimaera bound to2 cleaved dna Phyre2 PDB 3plo chain X Region: 2 - 69 Aligned: 68 Modelled: 68 Confidence: 99.2% Identity: 46% PDB header:recombination Chain: X: PDB Molecule:dna-invertase; PDBTitle: crystal structure of the fis-independent mutant of gin Phyre2 PDB 1hx7 chain A Region: 4 - 65 Aligned: 62 Modelled: 62 Confidence: 99.2% Identity: 29% Fold: Resolvase-like Superfamily: Resolvase-like Family: gamma,delta resolvase, catalytic domain Phyre2 PDB 2gm4 chain A domain 2 Region: 3 - 64 Aligned: 62 Modelled: 62 Confidence: 99.1% Identity: 31% Fold: Resolvase-like Superfamily: Resolvase-like Family: gamma,delta resolvase, catalytic domain Phyre2 PDB 1gdt chain A domain 2 Region: 1 - 64 Aligned: 64 Modelled: 64 Confidence: 99.0% Identity: 28% Fold: Resolvase-like Superfamily: Resolvase-like Family: gamma,delta resolvase, catalytic domain Phyre2 PDB 3lhk chain A Region: 1 - 59 Aligned: 57 Modelled: 59 Confidence: 98.8% Identity: 16% PDB header:dna binding protein Chain: A: PDB Molecule:putative dna binding protein mj0014; PDBTitle: crystal structure of putative dna binding protein from2 methanocaldococcus jannaschii. Phyre2 PDB 3lhf chain C Region: 3 - 56 Aligned: 52 Modelled: 54 Confidence: 98.8% Identity: 23% PDB header:recombination Chain: C: PDB Molecule:serine recombinase; PDBTitle: the crystal structure of a serine recombinase from2 sulfolobus solfataricus to 2.3a Phyre2 PDB 3guv chain A Region: 1 - 62 Aligned: 62 Modelled: 62 Confidence: 98.7% Identity: 21% PDB header:recombination Chain: A: PDB Molecule:site-specific recombinase, resolvase family protein; PDBTitle: crystal structure of a resolvase family site-specific recombinase from2 streptococcus pneumoniae Phyre2 PDB 3bvp chain B Region: 2 - 62 Aligned: 61 Modelled: 61 Confidence: 98.7% Identity: 26% PDB header:recombination Chain: B: PDB Molecule:tp901-1 integrase; PDBTitle: crystal structure of the n-terminal catalytic domain of tp901-12 integrase Phyre2 PDB 2obb chain A domain 1 Region: 6 - 77 Aligned: 65 Modelled: 72 Confidence: 85.3% Identity: 18% Fold: HAD-like Superfamily: HAD-like Family: BT0820-like Phyre2 PDB 3trj chain C Region: 8 - 56 Aligned: 46 Modelled: 49 Confidence: 82.2% Identity: 20% PDB header:isomerase Chain: C: PDB Molecule:phosphoheptose isomerase; PDBTitle: structure of a phosphoheptose isomerase from francisella tularensis Phyre2 PDB 3sho chain A Region: 7 - 59 Aligned: 50 Modelled: 53 Confidence: 78.1% Identity: 22% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, rpir family; PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain) Phyre2 PDB 2c71 chain A domain 1 Region: 8 - 55 Aligned: 48 Modelled: 48 Confidence: 77.1% Identity: 15% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 2cc0 chain A domain 1 Region: 6 - 66 Aligned: 54 Modelled: 61 Confidence: 74.9% Identity: 11% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 2x3y chain A Region: 8 - 56 Aligned: 46 Modelled: 49 Confidence: 72.6% Identity: 9% PDB header:isomerase Chain: A: PDB Molecule:phosphoheptose isomerase; PDBTitle: crystal structure of gmha from burkholderia pseudomallei Phyre2 PDB 1x92 chain A Region: 3 - 56 Aligned: 51 Modelled: 54 Confidence: 72.5% Identity: 14% Fold: SIS domain Superfamily: SIS domain Family: mono-SIS domain Phyre2 1 c3pkzK_ 2 c3g13B_ 3 c2r0qF_ 4 d2rsla_ 5 c2gm4B_ 6 c3ploX_ 7 d1hx7a_ 8 d2gm4a2 9 d1gdta2 10 c3lhkA_ 11 c3lhfC_ 12 c3guvA_ 13 c3bvpB_ 14 d2obba1 15 c3trjC_ 16 c3shoA_ 17 d2c71a1 18 d2cc0a1 19 c2x3yA_ 20 d1x92a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3pkzK_ 99.4 17 PDB header:recombination Chain: K: PDB Molecule:recombinase sin; PDBTitle: structural basis for catalytic activation of a serine recombinase 2 c3g13B_ 99.4 14 PDB header:recombination Chain: B: PDB Molecule:putative conjugative transposon recombinase; PDBTitle: crystal structure of putative conjugative transposon recombinase from2 clostridium difficile 3 c2r0qF_ 99.4 18 PDB header:recombination/dna Chain: F: PDB Molecule:putative transposon tn552 dna-invertase bin3; PDBTitle: crystal structure of a serine recombinase- dna regulatory2 complex 4 d2rsla_ 99.2 30 Fold:Resolvase-like Superfamily:Resolvase-like Family:gamma,delta resolvase, catalytic domain 5 c2gm4B_ 99.2 29 PDB header:recombination, dna Chain: B: PDB Molecule:transposon gamma-delta resolvase; PDBTitle: an activated, tetrameric gamma-delta resolvase: hin chimaera bound to2 cleaved dna 6 c3ploX_ 99.2 46 PDB header:recombination Chain: X: PDB Molecule:dna-invertase; PDBTitle: crystal structure of the fis-independent mutant of gin 7 d1hx7a_ 99.2 29 Fold:Resolvase-like Superfamily:Resolvase-like Family:gamma,delta resolvase, catalytic domain 8 d2gm4a2 99.1 31 Fold:Resolvase-like Superfamily:Resolvase-like Family:gamma,delta resolvase, catalytic domain 9 d1gdta2 99.0 28 Fold:Resolvase-like Superfamily:Resolvase-like Family:gamma,delta resolvase, catalytic domain 10 c3lhkA_ 98.8 16 PDB header:dna binding protein Chain: A: PDB Molecule:putative dna binding protein mj0014; PDBTitle: crystal structure of putative dna binding protein from2 methanocaldococcus jannaschii. 11 c3lhfC_ 98.8 23 PDB header:recombination Chain: C: PDB Molecule:serine recombinase; PDBTitle: the crystal structure of a serine recombinase from2 sulfolobus solfataricus to 2.3a 12 c3guvA_ 98.7 21 PDB header:recombination Chain: A: PDB Molecule:site-specific recombinase, resolvase family protein; PDBTitle: crystal structure of a resolvase family site-specific recombinase from2 streptococcus pneumoniae 13 c3bvpB_ 98.7 26 PDB header:recombination Chain: B: PDB Molecule:tp901-1 integrase; PDBTitle: crystal structure of the n-terminal catalytic domain of tp901-12 integrase 14 d2obba1 85.3 18 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 15 c3trjC_ 82.2 20 PDB header:isomerase Chain: C: PDB Molecule:phosphoheptose isomerase; PDBTitle: structure of a phosphoheptose isomerase from francisella tularensis 16 c3shoA_ 78.1 22 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, rpir family; PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain) 17 d2c71a1 77.1 15 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 18 d2cc0a1 74.9 11 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 19 c2x3yA_ 72.6 9 PDB header:isomerase Chain: A: PDB Molecule:phosphoheptose isomerase; PDBTitle: crystal structure of gmha from burkholderia pseudomallei 20 d1x92a_ 72.5 14 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 21 d2c1ia1 not modelled 70.1 16 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 22 d1x94a_ not modelled 69.6 15 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 23 c2xhzC_ not modelled 69.1 5 PDB header:isomerase Chain: C: PDB Molecule:arabinose 5-phosphate isomerase; PDBTitle: probing the active site of the sugar isomerase domain from e. coli2 arabinose-5-phosphate isomerase via x-ray crystallography 24 c2yvaB_ not modelled 67.9 22 PDB header:dna binding protein Chain: B: PDB Molecule:dnaa initiator-associating protein diaa; PDBTitle: crystal structure of escherichia coli diaa 25 d1jeoa_ not modelled 63.7 8 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 26 d1tk9a_ not modelled 58.8 10 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 27 c1w17A_ not modelled 56.1 13 PDB header:hydrolase Chain: A: PDB Molecule:probable polysaccharide deacetylase pdaa; PDBTitle: structure of bacillus subtilis pdaa, a family 42 carbohydrate esterase. 28 c3fxaA_ not modelled 55.9 10 PDB header:sugar binding protein Chain: A: PDB Molecule:sis domain protein; PDBTitle: crystal structure of a putative sugar-phosphate isomerase2 (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a3 resolution 29 d1vima_ not modelled 55.7 12 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 30 d1m3sa_ not modelled 55.4 10 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 31 d1ny1a_ not modelled 54.9 13 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 32 d2p8ta2 not modelled 48.8 10 Fold:DCoH-like Superfamily:GAD domain-like Family:PH0730 C-terminal domain-like 33 c3etnD_ not modelled 47.4 15 PDB header:isomerase Chain: D: PDB Molecule:putative phosphosugar isomerase involved in capsule PDBTitle: crystal structure of putative phosphosugar isomerase involved in2 capsule formation (yp_209877.1) from bacteroides fragilis nctc 93433 at 1.70 a resolution 34 c2c1iA_ not modelled 47.2 17 PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan glcnac deacetylase; PDBTitle: structure of streptococcus pnemoniae peptidoglycan2 deacetylase (sppgda) d 275 n mutant. 35 d1j8fa_ not modelled 40.1 14 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 36 c2vyoA_ not modelled 36.0 9 PDB header:hydrolase Chain: A: PDB Molecule:chitooligosaccharide deacetylase; PDBTitle: chitin deacetylase family member from encephalitozoon2 cuniculi 37 c3cvjB_ not modelled 35.5 16 PDB header:isomerase Chain: B: PDB Molecule:putative phosphoheptose isomerase; PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution 38 c1q14A_ not modelled 35.1 17 PDB header:hydrolase Chain: A: PDB Molecule:hst2 protein; PDBTitle: structure and autoregulation of the yeast hst2 homolog of sir2 39 c2puwA_ not modelled 32.6 10 PDB header:transferase Chain: A: PDB Molecule:isomerase domain of glutamine-fructose-6-phosphate PDBTitle: the crystal structure of isomerase domain of glucosamine-6-phosphate2 synthase from candida albicans 40 d2jfga2 not modelled 30.4 16 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 41 d2j13a1 not modelled 28.1 24 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 42 d2nlya1 not modelled 27.8 14 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:Divergent polysaccharide deacetylase 43 c3pryA_ not modelled 26.9 12 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein hsp 90-beta; PDBTitle: crystal structure of the middle domain of human hsp90-beta refined at2 2.3 a resolution 44 c3glsC_ not modelled 26.5 23 PDB header:hydrolase Chain: C: PDB Molecule:nad-dependent deacetylase sirtuin-3, PDBTitle: crystal structure of human sirt3 45 d1q1aa_ not modelled 24.5 17 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 46 c2hjhB_ not modelled 22.6 17 PDB header:hydrolase Chain: B: PDB Molecule:nad-dependent histone deacetylase sir2; PDBTitle: crystal structure of the sir2 deacetylase 47 c2w3zA_ not modelled 22.1 15 PDB header:hydrolase Chain: A: PDB Molecule:putative deacetylase; PDBTitle: structure of a streptococcus mutans ce4 esterase 48 c2zj3A_ not modelled 19.3 10 PDB header:transferase Chain: A: PDB Molecule:glucosamine--fructose-6-phosphate PDBTitle: isomerase domain of human glucose:fructose-6-phosphate2 amidotransferase 49 c3pkiF_ not modelled 17.7 13 PDB header:hydrolase Chain: F: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: human sirt6 crystal structure in complex with adp ribose 50 c3k35D_ not modelled 15.3 13 PDB header:hydrolase Chain: D: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: crystal structure of human sirt6 51 c1gqqA_ not modelled 14.5 13 PDB header:cell wall biosynthesis Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus2 influenzae 52 d1xdpa3 not modelled 13.9 12 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 53 c2odkD_ not modelled 13.6 5 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein; PDBTitle: putative prevent-host-death protein from nitrosomonas europaea 54 c2gq0B_ not modelled 13.1 20 PDB header:chaperone, hydrolase Chain: B: PDB Molecule:chaperone protein htpg; PDBTitle: crystal structure of the middle domain of htpg, the e. coli2 hsp90 55 c3kw0D_ not modelled 12.7 13 PDB header:hydrolase Chain: D: PDB Molecule:cysteine peptidase; PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution 56 c3ipzA_ not modelled 12.5 14 PDB header:electron transport, oxidoreductase Chain: A: PDB Molecule:monothiol glutaredoxin-s14, chloroplastic; PDBTitle: crystal structure of arabidopsis monothiol glutaredoxin atgrxcp 57 d1usua_ not modelled 12.5 12 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Hsp90 middle domain 58 d1x52a1 not modelled 12.3 25 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 59 d1ofla_ not modelled 11.7 17 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Chondroitinase B 60 c3efhB_ not modelled 11.5 8 PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase 1; PDBTitle: crystal structure of human phosphoribosyl pyrophosphate2 synthetase 1 61 d1p3da2 not modelled 11.5 14 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 62 c3e7nB_ not modelled 11.4 20 PDB header:transport protein Chain: B: PDB Molecule:d-ribose high-affinity transport system; PDBTitle: crystal structure of d-ribose high-affinity transport system from2 salmonella typhimurium lt2 63 c2a3nA_ not modelled 11.4 12 PDB header:sugar binding protein Chain: A: PDB Molecule:putative glucosamine-fructose-6-phosphate aminotransferase; PDBTitle: crystal structure of a putative glucosamine-fructose-6-phosphate2 aminotransferase (stm4540.s) from salmonella typhimurium lt2 at 1.353 a resolution 64 c1hk7A_ not modelled 11.3 12 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein hsp82; PDBTitle: middle domain of hsp90 65 c3mvnA_ not modelled 10.9 6 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamayl-medo- PDBTitle: crystal structure of a domain from a putative udp-n-acetylmuramate:l-2 alanyl-gamma-d-glutamayl-medo-diaminopimelate ligase from haemophilus3 ducreyi 35000hp 66 c2o1wB_ not modelled 10.7 14 PDB header:chaperone Chain: B: PDB Molecule:endoplasmin; PDBTitle: structure of n-terminal plus middle domains (n+m) of grp94 67 c1dbgA_ not modelled 10.4 17 PDB header:lyase Chain: A: PDB Molecule:chondroitinase b; PDBTitle: crystal structure of chondroitinase b 68 d1x9aa_ not modelled 10.1 14 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrH-like 69 c2p5dA_ not modelled 10.0 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0310 protein mjecl36; PDBTitle: crystal structure of mjecl36 from methanocaldococcus2 jannaschii dsm 2661 70 d1ps9a1 not modelled 9.7 16 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 71 d1ogda_ not modelled 9.6 15 Fold:RbsD-like Superfamily:RbsD-like Family:RbsD-like 72 c3p13B_ not modelled 9.6 15 PDB header:isomerase Chain: B: PDB Molecule:d-ribose pyranase; PDBTitle: complex structure of d-ribose pyranase sa240 with d-ribose 73 c2o14A_ not modelled 9.5 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yxim; PDBTitle: x-ray crystal structure of protein yxim_bacsu from bacillus2 subtilis. northeast structural genomics consortium target3 sr595 74 d1e8ca2 not modelled 9.3 17 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 75 c3hs2H_ not modelled 8.9 19 PDB header:antitoxin Chain: H: PDB Molecule:prevent host death protein; PDBTitle: crystal structure of phd truncated to residue 57 in an orthorhombic2 space group 76 d1x9ia_ not modelled 8.7 15 Fold:SIS domain Superfamily:SIS domain Family:double-SIS domain 77 c1dkrB_ not modelled 8.7 10 PDB header:transferase Chain: B: PDB Molecule:phosphoribosyl pyrophosphate synthetase; PDBTitle: crystal structures of bacillus subtilis phosphoribosylpyrophosphate2 synthetase: molecular basis of allosteric inhibition and activation. 78 c3hryA_ not modelled 8.6 19 PDB header:antitoxin Chain: A: PDB Molecule:prevent host death protein; PDBTitle: crystal structure of phd in a trigonal space group and partially2 disordered 79 d2iw0a1 not modelled 8.4 11 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 80 d2odka1 not modelled 8.0 5 Fold:YefM-like Superfamily:YefM-like Family:YefM-like 81 d1q45a_ not modelled 7.9 23 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 82 d2gbsa1 not modelled 7.9 14 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 83 c2wztA_ not modelled 7.8 9 PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of a mycobacterium aldo-keto reductase in2 its apo and liganded form 84 d2hd9a1 not modelled 7.6 18 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 85 d1vjia_ not modelled 7.6 19 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 86 d2ob5a1 not modelled 7.4 15 Fold:RbsD-like Superfamily:RbsD-like Family:RbsD-like 87 d1zcea1 not modelled 7.1 14 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 88 d1hw6a_ not modelled 7.1 14 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 89 c1xkmC_ not modelled 7.0 24 PDB header:antibiotic Chain: C: PDB Molecule:distinctin chain a; PDBTitle: nmr structure of antimicrobial peptide distinctin in water 90 c1pgjA_ not modelled 7.0 15 PDB header:oxidoreductase Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase; PDBTitle: x-ray structure of 6-phosphogluconate dehydrogenase from the protozoan2 parasite t. brucei 91 c1y6zA_ not modelled 6.9 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:heat shock protein, putative; PDBTitle: middle domain of plasmodium falciparum putative heat shock protein2 pf14_0417 92 c3hn7A_ not modelled 6.9 13 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: crystal structure of a murein peptide ligase mpl (psyc_0032) from2 psychrobacter arcticus 273-4 at 1.65 a resolution 93 c3mvkA_ not modelled 6.9 20 PDB header:isomerase Chain: A: PDB Molecule:protein fucu; PDBTitle: the crystal structure of fucu from bifidobacterium longum to 1.65a 94 c3iz6V_ not modelled 6.8 20 PDB header:ribosome Chain: V: PDB Molecule:40s ribosomal protein s25 (s25e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 95 c2o8rA_ not modelled 6.7 19 PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis 96 c1xkmA_ not modelled 6.5 29 PDB header:antibiotic Chain: A: PDB Molecule:distinctin chain a; PDBTitle: nmr structure of antimicrobial peptide distinctin in water 97 d1a6fa_ not modelled 6.5 7 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:RNase P protein 98 c3hjcA_ not modelled 6.3 18 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein 83-1; PDBTitle: crystal structure of the carboxy-terminal domain of hsp90 from2 leishmania major, lmjf33.0312 99 c2iw0A_ not modelled 6.3 11 PDB header:hydrolase Chain: A: PDB Molecule:chitin deacetylase; PDBTitle: structure of the chitin deacetylase from the fungal2 pathogen colletotrichum lindemuthianum

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0