Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP78061
DateThu Jan 5 12:33:07 GMT 2012
Unique Job ID367f89cd7233f068

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1fpyE_
Top template information
PDB header:ligase
Chain: E: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of glutamine synthetase from salmonella2 typhimurium with inhibitor phosphinothricin
Confidence and coverage
Confidence:100.0% Coverage: 92%
433 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  METNIVEVENFVQQSEERRGSAFTQEVKRYLERYPNTQYVDVLLTDLNGCFRGKRIPVSS
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   .........70.........80.........90.........100.........110.........120
Sequence  LKKLEKGCYFPASVFAMDILGNVVEEAGLGQEMGEPDRTCVPVLGSLTPSAADPEFIGQM
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??


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   .........130.........140.........150.........160.........170.........180
Sequence  LLTMVDEDGAPFDVEPRNVLNRLWQQLRQRGLFPVVAVELEFYLLDRQRDAEGYLQPPCA
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???






?
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   .........190.........200.........210.........220.........230.........240
Sequence  PGTDDRNTQSQVYSVDNLNHFADVLNDIDELAQLQLIPADGAVAEASPGQFEINLYHTDN
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   .........250.........260.........270.........280.........290.........300
Sequence  VLEACDDALALKRLVRLMAEKHKMHATFMAKPYEEHAGSGMHIHISMQNNRGENVLSDAE
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????
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   .........310.........320.........330.........340.........350.........360
Sequence  GEDSPLLKKMLAGMIDLMPSSMALLAPNVNSYRRFQPGMYVPTQASWGHNNRTVALRIPC
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   .........370.........380.........390.........400.........410.........420
Sequence  GDRHNHRVEYRVAGADANPYLVMAAIFAGILHGLDNELPLQEEVEGNGLEQEGLPFPIRQ
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   .........430.........440.........450.........460.........470..
Sequence  SDALGEFIENDHLRRYLGERFCHVYHACKNDELLQFERLITETEIEWMLKNA
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??
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1fpy chain E

3D model

Region: 23 - 470
Aligned: 433
Modelled: 448
Confidence: 100.0%
Identity: 24%
PDB header:ligase
Chain: E: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of glutamine synthetase from salmonella2 typhimurium with inhibitor phosphinothricin

Phyre2

PDB 3ng0 chain A

3D model

Region: 23 - 470
Aligned: 433
Modelled: 436
Confidence: 100.0%
Identity: 22%
PDB header:ligase
Chain: A: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of glutamine synthetase from synechocystis sp. pcc2 6803

Phyre2

PDB 1hto chain B

3D model

Region: 20 - 470
Aligned: 436
Modelled: 439
Confidence: 100.0%
Identity: 24%
PDB header:ligase
Chain: B: PDB Molecule:glutamine synthetase;
PDBTitle: crystallographic structure of a relaxed glutamine synthetase from2 mycobacterium tuberculosis

Phyre2

PDB 2j9i chain L

3D model

Region: 23 - 470
Aligned: 411
Modelled: 432
Confidence: 100.0%
Identity: 22%
PDB header:ligase
Chain: L: PDB Molecule:glutamate-ammonia ligase domain-containing
PDBTitle: lengsin is a survivor of an ancient family of class i2 glutamine synthetases in eukaryotes that has undergone3 evolutionary re-engineering for a tissue-specific role4 in the vertebrate eye lens.

Phyre2

PDB 1f52 chain A domain 2

3D model

Region: 133 - 470
Aligned: 337
Modelled: 338
Confidence: 100.0%
Identity: 24%
Fold: Glutamine synthetase/guanido kinase
Superfamily: Glutamine synthetase/guanido kinase
Family: Glutamine synthetase catalytic domain

Phyre2

PDB 2bvc chain A domain 2

3D model

Region: 135 - 470
Aligned: 334
Modelled: 336
Confidence: 100.0%
Identity: 24%
Fold: Glutamine synthetase/guanido kinase
Superfamily: Glutamine synthetase/guanido kinase
Family: Glutamine synthetase catalytic domain

Phyre2

PDB 2qc8 chain J

3D model

Region: 25 - 397
Aligned: 341
Modelled: 354
Confidence: 100.0%
Identity: 20%
PDB header:ligase
Chain: J: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of human glutamine synthetase in complex with adp2 and methionine sulfoximine phosphate

Phyre2

PDB 2d3a chain J

3D model

Region: 24 - 391
Aligned: 338
Modelled: 355
Confidence: 100.0%
Identity: 16%
PDB header:ligase
Chain: J: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of the maize glutamine synthetase2 complexed with adp and methionine sulfoximine phosphate

Phyre2

PDB 3fky chain D

3D model

Region: 37 - 402
Aligned: 325
Modelled: 351
Confidence: 100.0%
Identity: 20%
PDB header:ligase
Chain: D: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of the glutamine synthetase gln1deltan182 from the yeast saccharomyces cerevisiae

Phyre2

PDB 3o6x chain C

3D model

Region: 133 - 456
Aligned: 311
Modelled: 324
Confidence: 100.0%
Identity: 22%
PDB header:ligase
Chain: C: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of the type iii glutamine synthetase from2 bacteroides fragilis

Phyre2

PDB 1f52 chain A domain 1

3D model

Region: 23 - 132
Aligned: 97
Modelled: 110
Confidence: 99.9%
Identity: 19%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: Glutamine synthetase, N-terminal domain
Family: Glutamine synthetase, N-terminal domain

Phyre2

PDB 2bvc chain A domain 1

3D model

Region: 23 - 132
Aligned: 97
Modelled: 110
Confidence: 99.9%
Identity: 23%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: Glutamine synthetase, N-terminal domain
Family: Glutamine synthetase, N-terminal domain

Phyre2

PDB 1tt4 chain B

3D model

Region: 156 - 403
Aligned: 196
Modelled: 200
Confidence: 99.0%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative cytoplasmic protein;
PDBTitle: structure of np459575, a predicted glutathione synthase from2 salmonella typhimurium

Phyre2

PDB 1tt4 chain A

3D model

Region: 156 - 403
Aligned: 196
Modelled: 200
Confidence: 99.0%
Identity: 19%
Fold: Glutamine synthetase/guanido kinase
Superfamily: Glutamine synthetase/guanido kinase
Family: Glutamate-cysteine ligase family 2 (GCS2)

Phyre2

PDB 1r8g chain A

3D model

Region: 156 - 394
Aligned: 185
Modelled: 195
Confidence: 98.9%
Identity: 18%
Fold: Glutamine synthetase/guanido kinase
Superfamily: Glutamine synthetase/guanido kinase
Family: Glutamate-cysteine ligase family 2 (GCS2)

Phyre2

PDB 2gwc chain E

3D model

Region: 154 - 329
Aligned: 136
Modelled: 136
Confidence: 97.9%
Identity: 16%
PDB header:ligase
Chain: E: PDB Molecule:glutamate cysteine ligase;
PDBTitle: crystal structure of plant glutamate cysteine ligase in complex with a2 transition state analogue

Phyre2

PDB 1u8s chain A domain 2

3D model

Region: 204 - 270
Aligned: 64
Modelled: 67
Confidence: 32.8%
Identity: 9%
Fold: Ferredoxin-like
Superfamily: ACT-like
Family: Glycine cleavage system transcriptional repressor

Phyre2

PDB 2jy5 chain A

3D model

Region: 129 - 153
Aligned: 25
Modelled: 25
Confidence: 24.7%
Identity: 24%
PDB header:signaling protein
Chain: A: PDB Molecule:ubiquilin-1;
PDBTitle: nmr structure of ubiquilin 1 uba domain

Phyre2

PDB 1owx chain A

3D model

Region: 23 - 54
Aligned: 32
Modelled: 32
Confidence: 20.2%
Identity: 9%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 1nxi chain A

3D model

Region: 136 - 263
Aligned: 93
Modelled: 95
Confidence: 18.5%
Identity: 17%
Fold: Ferredoxin-like
Superfamily: Hypothetical protein VC0424
Family: Hypothetical protein VC0424

Phyre2
1

c1fpyE_
2

c3ng0A_
3

c1htoB_
4

c2j9iL_
5

d1f52a2
6

d2bvca2
7

c2qc8J_
8

c2d3aJ_
9

c3fkyD_
10

c3o6xC_
11

d1f52a1
12

d2bvca1
13

c1tt4B_
14

d1tt4a_
15

d1r8ga_
16

c2gwcE_
17

d1u8sa2
18

c2jy5A_
19

d1owxa_
20

d1nxia_
21



22



23



24



25



26



27



28



29



30



31



32



33



34



35



36



37



38



39



40



41



42



43



44



45



46



47



48



49



50



51



52






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1fpyE_



100.0 24 PDB header:ligase
Chain: E: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of glutamine synthetase from salmonella2 typhimurium with inhibitor phosphinothricin
2c3ng0A_



100.0 22 PDB header:ligase
Chain: A: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of glutamine synthetase from synechocystis sp. pcc2 6803
3c1htoB_



100.0 24 PDB header:ligase
Chain: B: PDB Molecule:glutamine synthetase;
PDBTitle: crystallographic structure of a relaxed glutamine synthetase from2 mycobacterium tuberculosis
4c2j9iL_



100.0 22 PDB header:ligase
Chain: L: PDB Molecule:glutamate-ammonia ligase domain-containing
PDBTitle: lengsin is a survivor of an ancient family of class i2 glutamine synthetases in eukaryotes that has undergone3 evolutionary re-engineering for a tissue-specific role4 in the vertebrate eye lens.
5d1f52a2



100.0 24 Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Glutamine synthetase catalytic domain
6d2bvca2



100.0 24 Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Glutamine synthetase catalytic domain
7c2qc8J_



100.0 20 PDB header:ligase
Chain: J: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of human glutamine synthetase in complex with adp2 and methionine sulfoximine phosphate
8c2d3aJ_



100.0 16 PDB header:ligase
Chain: J: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of the maize glutamine synthetase2 complexed with adp and methionine sulfoximine phosphate
9c3fkyD_



100.0 20 PDB header:ligase
Chain: D: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of the glutamine synthetase gln1deltan182 from the yeast saccharomyces cerevisiae
10c3o6xC_



100.0 22 PDB header:ligase
Chain: C: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of the type iii glutamine synthetase from2 bacteroides fragilis
11d1f52a1



99.9 19 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Glutamine synthetase, N-terminal domain
Family:Glutamine synthetase, N-terminal domain
12d2bvca1



99.9 23 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Glutamine synthetase, N-terminal domain
Family:Glutamine synthetase, N-terminal domain
13c1tt4B_



99.0 19 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative cytoplasmic protein;
PDBTitle: structure of np459575, a predicted glutathione synthase from2 salmonella typhimurium
14d1tt4a_



99.0 19 Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Glutamate-cysteine ligase family 2 (GCS2)
15d1r8ga_



98.9 18 Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Glutamate-cysteine ligase family 2 (GCS2)
16c2gwcE_



97.9 16 PDB header:ligase
Chain: E: PDB Molecule:glutamate cysteine ligase;
PDBTitle: crystal structure of plant glutamate cysteine ligase in complex with a2 transition state analogue
17d1u8sa2



32.8 9 Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Glycine cleavage system transcriptional repressor
18c2jy5A_



24.7 24 PDB header:signaling protein
Chain: A: PDB Molecule:ubiquilin-1;
PDBTitle: nmr structure of ubiquilin 1 uba domain
19d1owxa_



20.2 9 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
20d1nxia_



18.5 17 Fold:Ferredoxin-like
Superfamily:Hypothetical protein VC0424
Family:Hypothetical protein VC0424
21c3ln7A_



not modelled 14.5 18 PDB header:ligase
Chain: A: PDB Molecule:glutathione biosynthesis bifunctional protein gshab;
PDBTitle: crystal structure of a bifunctional glutathione synthetase from2 pasteurella multocida
22d1neka3



not modelled 13.6 16 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
23c3ns5B_



not modelled 13.1 6 PDB header:translation
Chain: B: PDB Molecule:eukaryotic translation initiation factor 3 subunit b;
PDBTitle: crystal structure of the rna recognition motif of yeast eif3b residues2 76-161
24c2vxeA_



not modelled 10.4 17 PDB header:transcription
Chain: A: PDB Molecule:cg10686-pa;
PDBTitle: solution structure of the lsm domain of drosophila2 melanogaster tral (trailer hitch)
25c2k7rA_



not modelled 10.4 14 PDB header:replication
Chain: A: PDB Molecule:primosomal protein dnai;
PDBTitle: n-terminal domain of the bacillus subtilis helicase-loading2 protein dnai
26c3htnA_



not modelled 9.9 12 PDB header:metal binding protein
Chain: A: PDB Molecule:putative dna binding protein;
PDBTitle: crystal structure of a putative dna binding protein (bt_1116) from2 bacteroides thetaiotaomicron vpi-5482 at 1.50 a resolution
27d2z1ea1



not modelled 9.5 17 Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
28c3dcgF_



not modelled 9.5 50 PDB header:ligase/viral protein
Chain: F: PDB Molecule:virion infectivity factor;
PDBTitle: crystal structure of the hiv vif bc-box in complex with human elonginb2 and elonginc
29c2zuuA_



not modelled 9.2 20 PDB header:transferase
Chain: A: PDB Molecule:lacto-n-biose phosphorylase;
PDBTitle: crystal structure of galacto-n-biose/lacto-n-biose i phosphorylase in2 complex with glcnac
30c3bdkB_



not modelled 9.0 14 PDB header:lyase
Chain: B: PDB Molecule:d-mannonate dehydratase;
PDBTitle: crystal structure of streptococcus suis mannonate2 dehydratase complexed with substrate analogue
31d2bs2a3



not modelled 8.9 25 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
32c3ns6B_



not modelled 8.9 6 PDB header:translation
Chain: B: PDB Molecule:eukaryotic translation initiation factor 3 subunit b;
PDBTitle: crystal structure of hte rna recognition motif of yeast eif3b residues2 76-170
33c1jqoA_



not modelled 8.8 17 PDB header:lyase
Chain: A: PDB Molecule:phosphoenolpyruvate carboxylase;
PDBTitle: crystal structure of c4-form phosphoenolpyruvate carboxylase from2 maize
34d1jqoa_



not modelled 8.8 17 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate carboxylase
35c1nvpD_



not modelled 7.4 15 PDB header:transcription/dna
Chain: D: PDB Molecule:transcription initiation factor iia gamma chain;
PDBTitle: human tfiia/tbp/dna complex
36d2vxfa1



not modelled 7.1 21 Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:LSM14 N-terminal domain-like
37d1zl0a2



not modelled 6.8 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:LD-carboxypeptidase A N-terminal domain-like
38d2rgfa_



not modelled 6.7 20 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
39d1prtc1



not modelled 6.7 27 Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
40c3re3B_



not modelled 6.1 15 PDB header:lyase
Chain: B: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: crystal structure of 2-c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase from francisella tularensis
41c3it5B_



not modelled 6.0 33 PDB header:hydrolase
Chain: B: PDB Molecule:protease lasa;
PDBTitle: crystal structure of the lasa virulence factor from pseudomonas2 aeruginosa
42d1prtb1



not modelled 5.8 20 Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
43c1nh2D_



not modelled 5.8 22 PDB header:transcription/dna
Chain: D: PDB Molecule:transcription initiation factor iia small chain;
PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex
44d2o3la1



not modelled 5.7 16 Fold:Left-handed superhelix
Superfamily:BH3980-like
Family:BH3980-like
45d1ihma_



not modelled 5.6 19 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Caliciviridae-like VP
46d1xv2a_



not modelled 5.6 28 Fold:AF0104/ALDC/Ptd012-like
Superfamily:AF0104/ALDC/Ptd012-like
Family:Alpha-acetolactate decarboxylase-like
47d1eeja2



not modelled 5.5 10 Fold:Cystatin-like
Superfamily:DsbC/DsbG N-terminal domain-like
Family:DsbC/DsbG N-terminal domain-like
48c2qw5B_



not modelled 5.5 13 PDB header:isomerase
Chain: B: PDB Molecule:xylose isomerase-like tim barrel;
PDBTitle: crystal structure of a putative sugar phosphate isomerase/epimerase2 (ava4194) from anabaena variabilis atcc 29413 at 1.78 a resolution
49d2v0ea1



not modelled 5.4 13 Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
50d1t3ba2



not modelled 5.1 14 Fold:Cystatin-like
Superfamily:DsbC/DsbG N-terminal domain-like
Family:DsbC/DsbG N-terminal domain-like
51c1u8sB_



not modelled 5.1 7 PDB header:transcription
Chain: B: PDB Molecule:glycine cleavage system transcriptional
PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor
52d1jqna_



not modelled 5.1 21 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate carboxylase

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0