Email l.a.kelley@imperial.ac.uk Description P76372 Date Thu Jan 5 12:22:26 GMT 2012 Unique Job ID 3521ed868d64930c

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d3b8pa1 99.7 70 Fold:Ferredoxin-like Superfamily:Bacterial polysaccharide co-polymerase-like Family:FepE-like 2 d3b8ma1 99.6 19 Fold:Ferredoxin-like Superfamily:Bacterial polysaccharide co-polymerase-like Family:FepE-like 3 d3b8oa1 99.3 24 Fold:Ferredoxin-like Superfamily:Bacterial polysaccharide co-polymerase-like Family:FepE-like 4 c2qtsA_ 60.8 13 PDB header:membrane protein Chain: A: PDB Molecule:acid-sensing ion channel; PDBTitle: structure of an acid-sensing ion channel 1 at 1.9 a resolution and low2 ph 5 c2rmzA_ 56.3 21 PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-3; PDBTitle: bicelle-embedded integrin beta3 transmembrane segment 6 c2yl4A_ 46.2 9 PDB header:membrane protein Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10, PDBTitle: structure of the human mitochondrial abc transporter, abcb10 7 c2k1kA_ 42.2 31 PDB header:signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3 8 c2k1lB_ 42.2 31 PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3 9 c2k1kB_ 42.2 31 PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3 10 c2k1lA_ 42.0 38 PDB header:signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3 11 d2hyda2 41.8 19 Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region 12 d1rhzb_ 35.3 15 Fold:Single transmembrane helix Superfamily:Preprotein translocase SecE subunit Family:Preprotein translocase SecE subunit 13 c3ij4A_ 33.4 13 PDB header:transport protein Chain: A: PDB Molecule:amiloride-sensitive cation channel 2, neuronal; PDBTitle: cesium sites in the crystal structure of a functional acid2 sensing ion channel in the desensitized state 14 c3hd7A_ 33.0 15 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 15 d1pf4a2 30.7 15 Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region 16 c2hydB_ 29.1 19 PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 17 c2kncA_ 25.5 9 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 18 d1v54d_ 25.0 13 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit IV Family:Mitochondrial cytochrome c oxidase subunit IV 19 c2y69Q_ 24.4 13 PDB header:electron transport Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 20 c3g5uB_ 22.0 6 PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding 21 d3b60a2 not modelled 21.4 19 Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region 22 c1vf5R_ not modelled 20.1 22 PDB header:photosynthesis Chain: R: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 23 c2e74E_ not modelled 20.1 22 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus 24 c2e75E_ not modelled 20.1 22 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus 25 d2e74e1 not modelled 20.1 22 Fold:Single transmembrane helix Superfamily:PetL subunit of the cytochrome b6f complex Family:PetL subunit of the cytochrome b6f complex 26 c2e76E_ not modelled 20.1 22 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 27 d1nwaa_ not modelled 19.5 31 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 28 c1nwaA_ not modelled 19.5 31 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra; PDBTitle: structure of mycobacterium tuberculosis methionine2 sulfoxide reductase a in complex with protein-bound3 methionine 29 c2y69Z_ not modelled 19.0 27 PDB header:electron transport Chain: Z: PDB Molecule:cytochrome c oxidase polypeptide 8h; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 30 c2yvxD_ not modelled 18.5 3 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 31 c1vf5E_ not modelled 18.3 24 PDB header:photosynthesis Chain: E: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 32 d2axth1 not modelled 18.3 27 Fold:Single transmembrane helix Superfamily:Photosystem II 10 kDa phosphoprotein PsbH Family:PsbH-like 33 d1v54m_ not modelled 17.9 27 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Family:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) 34 d1v54l_ not modelled 16.5 19 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Family:Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) 35 c2j89A_ not modelled 15.8 31 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine sulfoxide reductase a; PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases 36 c3bqhA_ not modelled 15.1 31 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb; PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form) 37 c3k07A_ not modelled 14.8 0 PDB header:transport protein Chain: A: PDB Molecule:cation efflux system protein cusa; PDBTitle: crystal structure of cusa 38 d2r6gf1 not modelled 14.4 12 Fold:MalF N-terminal region-like Superfamily:MalF N-terminal region-like Family:MalF N-terminal region-like 39 c3b5wE_ not modelled 13.2 16 PDB header:membrane protein Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of eschericia coli msba 40 c1fvaA_ not modelled 13.0 38 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: crystal structure of bovine methionine sulfoxide reductase 41 d1ff3c_ not modelled 12.4 38 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 42 d1xrda1 not modelled 11.9 15 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 43 d1ff3a_ not modelled 11.3 35 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 44 c3pilA_ not modelled 11.1 31 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form 45 c2o01L_ not modelled 10.5 20 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem i reaction center subunit xi, PDBTitle: the structure of a plant photosystem i supercomplex at 3.42 angstrom resolution 46 d1fvga_ not modelled 10.3 35 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 47 c2kncB_ not modelled 10.2 12 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 48 c1qcrD_ not modelled 10.2 12 PDB header: PDB COMPND: 49 c2k21A_ not modelled 10.2 14 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 50 c3b5xB_ not modelled 10.2 16 PDB header:membrane protein Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae 51 c3e0mB_ not modelled 10.0 25 PDB header:oxidoreductase Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb PDBTitle: crystal structure of fusion protein of msra and msrb 52 c3cwbQ_ not modelled 9.9 9 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 53 d2e74d2 not modelled 9.3 22 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 54 c1kveA_ not modelled 8.8 27 PDB header:toxin Chain: A: PDB Molecule:smk toxin; PDBTitle: killer toxin from halotolerant yeast 55 c2k1aA_ not modelled 8.8 25 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 56 c1ps9A_ not modelled 8.7 20 PDB header:oxidoreductase Chain: A: PDB Molecule:2,4-dienoyl-coa reductase; PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase 57 c1zrtD_ not modelled 8.6 18 PDB header:oxidoreductase/metal transport Chain: D: PDB Molecule:cytochrome c1; PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound 58 c1m2zE_ not modelled 8.0 44 PDB header:hormone/hormone activator Chain: E: PDB Molecule:nuclear receptor coactivator 2; PDBTitle: crystal structure of a dimer complex of the human2 glucocorticoid receptor ligand-binding domain bound to3 dexamethasone and a tif2 coactivator motif 59 c1p84D_ not modelled 8.0 12 PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 60 d1rh5b_ not modelled 7.8 18 Fold:Single transmembrane helix Superfamily:Preprotein translocase SecE subunit Family:Preprotein translocase SecE subunit 61 c2y69Y_ not modelled 7.7 17 PDB header:electron transport Chain: Y: PDB Molecule:cytochrome c oxidase subunit 7c; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 62 d1pw4a_ not modelled 7.4 8 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter 63 d1ylfa1 not modelled 7.3 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator Rrf2 64 c1m2zB_ not modelled 7.2 44 PDB header:hormone/hormone activator Chain: B: PDB Molecule:nuclear receptor coactivator 2; PDBTitle: crystal structure of a dimer complex of the human2 glucocorticoid receptor ligand-binding domain bound to3 dexamethasone and a tif2 coactivator motif 65 d1xmec1 not modelled 7.2 32 Fold:Single transmembrane helix Superfamily:Bacterial ba3 type cytochrome c oxidase subunit IIa Family:Bacterial ba3 type cytochrome c oxidase subunit IIa 66 d1jb0l_ not modelled 7.1 8 Fold:Photosystem I reaction center subunit XI, PsaL Superfamily:Photosystem I reaction center subunit XI, PsaL Family:Photosystem I reaction center subunit XI, PsaL 67 c3ipdB_ not modelled 7.1 15 PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21 68 d2e74g1 not modelled 7.1 23 Fold:Single transmembrane helix Superfamily:PetG subunit of the cytochrome b6f complex Family:PetG subunit of the cytochrome b6f complex 69 c3ixzB_ not modelled 7.1 25 PDB header:hydrolase Chain: B: PDB Molecule:potassium-transporting atpase subunit beta; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 70 c1vf5G_ not modelled 7.0 23 PDB header:photosynthesis Chain: G: PDB Molecule:protein pet g; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 71 d1vf5g_ not modelled 7.0 23 Fold:Single transmembrane helix Superfamily:PetG subunit of the cytochrome b6f complex Family:PetG subunit of the cytochrome b6f complex 72 c2l2tA_ not modelled 7.0 11 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain 73 c3p5nA_ not modelled 7.0 18 PDB header:transport protein Chain: A: PDB Molecule:riboflavin uptake protein; PDBTitle: structure and mechanism of the s component of a bacterial ecf2 transporter 74 d1xd7a_ not modelled 6.8 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator Rrf2 75 c1ql1A_ not modelled 6.8 11 PDB header:virus Chain: A: PDB Molecule:pf1 bacteriophage coat protein b; PDBTitle: inovirus (filamentous bacteriophage) strain pf1 major coat2 protein assembly 76 c3m9bK_ not modelled 6.7 27 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 77 d1kqfb2 not modelled 6.6 17 Fold:Single transmembrane helix Superfamily:Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor Family:Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor 78 c2kluA_ not modelled 6.6 24 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 79 c3b8eB_ not modelled 6.6 27 PDB header:hydrolase/transport protein Chain: B: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump 80 d1otsa_ not modelled 6.5 13 Fold:Clc chloride channel Superfamily:Clc chloride channel Family:Clc chloride channel 81 c3lwfD_ not modelled 6.5 44 PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator (np_470886.1)2 from listeria innocua at 2.06 a resolution 82 c2lbgA_ not modelled 6.5 27 PDB header:membrane protein Chain: A: PDB Molecule:major prion protein; PDBTitle: structure of the chr of the prion protein in dpc micelles 83 c2kb1A_ not modelled 6.5 6 PDB header:membrane protein Chain: A: PDB Molecule:wsk3; PDBTitle: nmr studies of a channel protein without membrane:2 structure and dynamics of water-solubilized kcsa 84 c3ghfA_ not modelled 6.3 13 PDB header:cell cycle Chain: A: PDB Molecule:septum site-determining protein minc; PDBTitle: crystal structure of the septum site-determining protein2 minc from salmonella typhimurium 85 c3k69A_ not modelled 6.2 21 PDB header:transcription Chain: A: PDB Molecule:putative transcription regulator; PDBTitle: crystal structure of a putative transcriptional regulator (lp_0360)2 from lactobacillus plantarum at 1.95 a resolution 86 c2ht2B_ not modelled 6.2 13 PDB header:membrane protein Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca; PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex 87 c2y75F_ not modelled 6.2 25 PDB header:transcription Chain: F: PDB Molecule:hth-type transcriptional regulator cymr; PDBTitle: the structure of cymr (yrzc) the global cysteine regulator2 of b. subtilis 88 d2nr9a1 not modelled 6.1 23 Fold:Rhomboid-like Superfamily:Rhomboid-like Family:Rhomboid-like 89 c2wscL_ not modelled 6.1 15 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem i reaction center subunit xi, PDBTitle: improved model of plant photosystem i 90 c1amlA_ not modelled 6.0 44 PDB header:serine protease inhibitor Chain: A: PDB Molecule:amyloid a4; PDBTitle: the alzheimer`s disease amyloid a4 peptide (residues 1-40) 91 c3n4xB_ not modelled 5.9 6 PDB header:replication Chain: B: PDB Molecule:monopolin complex subunit csm1; PDBTitle: structure of csm1 full-length 92 d2yvxa3 not modelled 5.9 3 Fold:MgtE membrane domain-like Superfamily:MgtE membrane domain-like Family:MgtE membrane domain-like 93 d1reoa1 not modelled 5.8 11 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 94 c3mp7A_ not modelled 5.7 18 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase subunit secy; PDBTitle: lateral opening of a translocon upon entry of protein suggests the2 mechanism of insertion into membranes 95 c2onkC_ not modelled 5.7 6 PDB header:membrane protein Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease PDBTitle: abc transporter modbc in complex with its binding protein2 moda 96 d2onkc1 not modelled 5.7 6 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 97 d1fftb2 not modelled 5.6 13 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 98 c3a0hX_ not modelled 5.6 33 PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of i-substituted photosystem ii complex 99 c3a0hx_ not modelled 5.6 33 PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of i-substituted photosystem ii complex