Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	L	K	K	L	M	G	H	I	S	I	I	P	D	Y	R	Q	A	W	K	M	E	H	K	L	S	D	I	L	L	L	T	I	C	A	V	I	S	G	A	E	G	W	E	D	I	E	D	F	G	E	T	H	P	D	F	L	K	Q
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Y	G	D	F	E	N	G	I	P	V	H	D	T	I	A	R	V	V	S	C	I	S	P	A	K	F	H	E	C	F	I	N	W	M	R	D	C	H	S	S	D	D	K	D	V	I	A	I	D	G	K	T	L	R	H	S	Y	D	K	S
Secondary structure
SS confidence
Disorder																																									?																			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	R	R	G	A	I	H	V	I	S	A	F	S	T	M	H	S	L	V	I	G	Q	I	K	T	D	E	K	S	N	E	I	T	A	I	P	E	L	L	N	M	L	D	I	K	G	K	I	I	T	T	D	A	M	G	C	Q	K	D	I
Secondary structure
SS confidence
Disorder		?	?																																										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	E	K	I	Q	K	Q	G	G	D	Y	L	F	A	V	K	G	N	Q	G	R	L	N	K	A	F	E	E	K	F	P	L	K	E	L	N	N	P	A	H	D	S	Y	A	M	S	E	K	S	H	G	R	E	E	I	R	L	H	I	V
Secondary structure
SS confidence
Disorder																																																	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		C	D	V	P	D	E	L	I	D	F	T	F	E	W	K	G	L	K	K	L	C	V	A	V	S	F	R	S	I	I	A	E	Q	K	K	E	L	E	M	T	V	R	Y	Y	I	S	S	A	D	L	T	A	E	K	F	A	T	A	I	R
Secondary structure
SS confidence
Disorder									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		N	H	W	H	V	E	N	K	L	H	W	R	L	D	V	V	M	N	E	D	D	C	K	I	R	R	G	N	A	A	E	L	F	S	G	I	R	H	I	A	I	N	I	L	T	N	D	K	V	F	K	A	G	L	R	R	K	M	R	K
Secondary structure
SS confidence
Disorder								?																		?																					?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Sequence		A	A	M	D	R	N	Y	L	A	S	V	L	T	G	S	G	L	S
Secondary structure
SS confidence
Disorder														?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1mus chain A Region: 75 - 340 Aligned: 259 Modelled: 266 Confidence: 97.3% Identity: 12% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Transposase inhibitor (Tn5 transposase) Phyre2 PDB 1b7e chain A Region: 83 - 346 Aligned: 245 Modelled: 264 Confidence: 97.1% Identity: 12% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Transposase inhibitor (Tn5 transposase) Phyre2 PDB 2v9v chain A domain 2 Region: 42 - 110 Aligned: 69 Modelled: 69 Confidence: 82.6% Identity: 12% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: C-terminal fragment of elongation factor SelB Phyre2 PDB 2v9v chain A Region: 44 - 110 Aligned: 67 Modelled: 67 Confidence: 69.1% Identity: 10% PDB header:transcription Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: crystal structure of moorella thermoacetica selb(377-511) Phyre2 PDB 3hef chain B Region: 30 - 92 Aligned: 46 Modelled: 48 Confidence: 53.1% Identity: 22% PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit Phyre2 PDB 2ezh chain A Region: 68 - 89 Aligned: 22 Modelled: 22 Confidence: 49.2% Identity: 27% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Recombinase DNA-binding domain Phyre2 PDB 2ezi chain A Region: 68 - 89 Aligned: 22 Modelled: 22 Confidence: 48.0% Identity: 27% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Recombinase DNA-binding domain Phyre2 PDB 6pax chain A Region: 45 - 81 Aligned: 37 Modelled: 37 Confidence: 46.8% Identity: 24% PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions Phyre2 PDB 2ply chain B Region: 44 - 108 Aligned: 65 Modelled: 65 Confidence: 27.5% Identity: 9% PDB header:translation/rna Chain: B: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna. Phyre2 PDB 2vp8 chain A Region: 143 - 209 Aligned: 65 Modelled: 67 Confidence: 22.2% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase 2; PDBTitle: structure of mycobacterium tuberculosis rv1207 Phyre2 PDB 1ajz chain A Region: 151 - 209 Aligned: 57 Modelled: 59 Confidence: 21.5% Identity: 12% Fold: TIM beta/alpha-barrel Superfamily: Dihydropteroate synthetase-like Family: Dihydropteroate synthetase Phyre2 PDB 1pdn chain C Region: 54 - 78 Aligned: 25 Modelled: 25 Confidence: 20.5% Identity: 16% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Paired domain Phyre2 PDB 1e8q chain A Region: 301 - 312 Aligned: 11 Modelled: 12 Confidence: 19.9% Identity: 36% Fold: Cellulose docking domain, dockering Superfamily: Cellulose docking domain, dockering Family: Cellulose docking domain, dockering Phyre2 PDB 2pfs chain A Region: 105 - 193 Aligned: 89 Modelled: 89 Confidence: 19.4% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea Phyre2 PDB 2rfp chain A Region: 77 - 116 Aligned: 40 Modelled: 40 Confidence: 18.0% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:putative ntp pyrophosphohydrolase; PDBTitle: crystal structure of putative ntp pyrophosphohydrolase2 (yp_001813558.1) from exiguobacterium sibiricum 255-15 at 1.74 a3 resolution Phyre2 PDB 1iyx chain A domain 1 Region: 150 - 209 Aligned: 60 Modelled: 60 Confidence: 16.5% Identity: 22% Fold: TIM beta/alpha-barrel Superfamily: Enolase C-terminal domain-like Family: Enolase Phyre2 PDB 2y5s chain A Region: 151 - 199 Aligned: 47 Modelled: 49 Confidence: 15.1% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: crystal structure of burkholderia cenocepacia dihydropteroate2 synthase complexed with 7,8-dihydropteroate. Phyre2 PDB 1dlw chain A Region: 70 - 119 Aligned: 46 Modelled: 50 Confidence: 13.6% Identity: 11% Fold: Globin-like Superfamily: Globin-like Family: Truncated hemoglobin Phyre2 PDB 3e2d chain B Region: 130 - 194 Aligned: 65 Modelled: 65 Confidence: 13.1% Identity: 17% PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: the 1.4 a crystal structure of the large and cold-active2 vibrio sp. alkaline phosphatase Phyre2 PDB 3r1i chain B Region: 158 - 209 Aligned: 51 Modelled: 52 Confidence: 12.4% Identity: 24% PDB header:oxidoreductase Chain: B: PDB Molecule:short-chain type dehydrogenase/reductase; PDBTitle: crystal structure of a short-chain type dehydrogenase/reductase from2 mycobacterium marinum Phyre2 1 d1musa_ 2 d1b7ea_ 3 d2v9va2 4 c2v9vA_ 5 c3hefB_ 6 d2ezha_ 7 d2ezia_ 8 c6paxA_ 9 c2plyB_ 10 c2vp8A_ 11 d1ajza_ 12 d1pdnc_ 13 d1e8qa_ 14 c2pfsA_ 15 c2rfpA_ 16 d1iyxa1 17 c2y5sA_ 18 d1dlwa_ 19 c3e2dB_ 20 c3r1iB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1musa_ 97.3 12 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Transposase inhibitor (Tn5 transposase) 2 d1b7ea_ 97.1 12 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Transposase inhibitor (Tn5 transposase) 3 d2v9va2 82.6 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 4 c2v9vA_ 69.1 10 PDB header:transcription Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: crystal structure of moorella thermoacetica selb(377-511) 5 c3hefB_ 53.1 22 PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit 6 d2ezha_ 49.2 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 7 d2ezia_ 48.0 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 8 c6paxA_ 46.8 24 PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions 9 c2plyB_ 27.5 9 PDB header:translation/rna Chain: B: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna. 10 c2vp8A_ 22.2 18 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase 2; PDBTitle: structure of mycobacterium tuberculosis rv1207 11 d1ajza_ 21.5 12 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 12 d1pdnc_ 20.5 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 13 d1e8qa_ 19.9 36 Fold:Cellulose docking domain, dockering Superfamily:Cellulose docking domain, dockering Family:Cellulose docking domain, dockering 14 c2pfsA_ 19.4 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea 15 c2rfpA_ 18.0 15 PDB header:hydrolase Chain: A: PDB Molecule:putative ntp pyrophosphohydrolase; PDBTitle: crystal structure of putative ntp pyrophosphohydrolase2 (yp_001813558.1) from exiguobacterium sibiricum 255-15 at 1.74 a3 resolution 16 d1iyxa1 16.5 22 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 17 c2y5sA_ 15.1 15 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: crystal structure of burkholderia cenocepacia dihydropteroate2 synthase complexed with 7,8-dihydropteroate. 18 d1dlwa_ 13.6 11 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 19 c3e2dB_ 13.1 17 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: the 1.4 a crystal structure of the large and cold-active2 vibrio sp. alkaline phosphatase 20 c3r1iB_ 12.4 24 PDB header:oxidoreductase Chain: B: PDB Molecule:short-chain type dehydrogenase/reductase; PDBTitle: crystal structure of a short-chain type dehydrogenase/reductase from2 mycobacterium marinum 21 d2fgga1 not modelled 12.2 31 Fold:dsRBD-like Superfamily:Rv2632c-like Family:Rv2632c-like 22 c2kvcA_ not modelled 12.0 23 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a 23 c3mx7A_ not modelled 12.0 29 PDB header:apoptosis Chain: A: PDB Molecule:fas apoptotic inhibitory molecule 1; PDBTitle: crystal structure analysis of human faim-ntd 24 c2j4mA_ not modelled 11.5 36 PDB header:protein binding Chain: A: PDB Molecule:endoglucanase 45a; PDBTitle: double dockerin from piromyces equi cel45a 25 d3bpya1 not modelled 11.3 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 26 d1uuza_ not modelled 10.8 20 Fold:Inhibitor of vertebrate lysozyme, Ivy Superfamily:Inhibitor of vertebrate lysozyme, Ivy Family:Inhibitor of vertebrate lysozyme, Ivy 27 c2kzvA_ not modelled 10.8 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of cv_0373(175-257) protein from2 chromobacterium violaceum, northeast structural genomics consortium3 target cvr118a 28 c3emkA_ not modelled 10.8 25 PDB header:oxidoreductase Chain: A: PDB Molecule:glucose/ribitol dehydrogenase; PDBTitle: 2.5a crystal structure of glucose/ribitol dehydrogenase2 from brucella melitensis 29 c3pk0B_ not modelled 10.5 16 PDB header:oxidoreductase Chain: B: PDB Molecule:short-chain dehydrogenase/reductase sdr; PDBTitle: crystal structure of short-chain dehydrogenase/reductase sdr from2 mycobacterium smegmatis 30 c1gmuB_ not modelled 10.2 8 PDB header:metallochaperone Chain: B: PDB Molecule:uree; PDBTitle: structure of uree 31 c2z1nA_ not modelled 9.9 26 PDB header:oxidoreductase Chain: A: PDB Molecule:dehydrogenase; PDBTitle: crystal structure of ape0912 from aeropyrum pernix k1 32 d1xb4a2 not modelled 9.7 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 33 c3ol4B_ not modelled 9.7 22 PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c 34 c3rf7A_ not modelled 9.7 11 PDB header:oxidoreductase Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase; PDBTitle: crystal structure of an iron-containing alcohol dehydrogenase2 (sden_2133) from shewanella denitrificans os-217 at 2.12 a resolution 35 c3gk0H_ not modelled 9.6 24 PDB header:transferase Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic2 protein from burkholderia pseudomallei 36 c1e17A_ not modelled 9.6 9 PDB header:dna binding domain Chain: A: PDB Molecule:afx; PDBTitle: solution structure of the dna binding domain of the human2 forkhead transcription factor afx (foxo4) 37 d1cyda_ not modelled 9.6 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 38 d1g9ga_ not modelled 9.4 71 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 39 c3aq8A_ not modelled 9.1 4 PDB header:oxygen binding Chain: A: PDB Molecule:group 1 truncated hemoglobin; PDBTitle: crystal structure of truncated hemoglobin from tetrahymena pyriformis,2 q46e mutant, fe(iii) form 40 d1osna_ not modelled 9.1 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 41 d2c6ya1 not modelled 9.1 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 42 c3n1uA_ not modelled 9.0 15 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, had superfamily, subfamily iii a; PDBTitle: structure of putative had superfamily (subfamily iii a) hydrolase from2 legionella pneumophila 43 d2abka_ not modelled 8.9 15 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 44 d1mpga1 not modelled 8.8 14 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 45 d1eyea_ not modelled 8.8 19 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 46 c3ak4C_ not modelled 8.8 21 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-dependent quinuclidinone reductase; PDBTitle: crystal structure of nadh-dependent quinuclidinone reductase from2 agrobacterium tumefaciens 47 d3orca_ not modelled 8.7 21 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 48 c3co7C_ not modelled 8.7 14 PDB header:transcription/dna Chain: C: PDB Molecule:forkhead box protein o1; PDBTitle: crystal structure of foxo1 dbd bound to dbe2 dna 49 d1w6ta1 not modelled 8.6 23 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 50 d1s69a_ not modelled 8.6 21 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 51 c2yf3F_ not modelled 8.5 20 PDB header:hydrolase Chain: F: PDB Molecule:mazg-like nucleoside triphosphate pyrophosphohydrolase; PDBTitle: crystal structure of dr2231, the mazg-like protein from2 deinococcus radiodurans, complex with manganese 52 d2ptza1 not modelled 8.1 15 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 53 d2a22a1 not modelled 8.0 20 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 54 c3a52A_ not modelled 7.8 18 PDB header:hydrolase Chain: A: PDB Molecule:cold-active alkaline phosphatase; PDBTitle: crystal structure of cold-active alkailne phosphatase from2 psychrophile shewanella sp. 55 d1m5wa_ not modelled 7.7 28 Fold:TIM beta/alpha-barrel Superfamily:Pyridoxine 5'-phosphate synthase Family:Pyridoxine 5'-phosphate synthase 56 c1l2aD_ not modelled 7.6 57 PDB header:hydrolase Chain: D: PDB Molecule:cellobiohydrolase; PDBTitle: the crystal structure and catalytic mechanism of2 cellobiohydrolase cels, the major enzymatic component of3 the clostridium thermocellum cellulosome 57 d1l1ya_ not modelled 7.6 57 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 58 d1g31a_ not modelled 7.6 20 Fold:GroES-like Superfamily:GroES-like Family:GroES 59 c3ctmH_ not modelled 7.5 22 PDB header:oxidoreductase Chain: H: PDB Molecule:carbonyl reductase; PDBTitle: crystal structure of a carbonyl reductase from candida2 parapsilosis with anti-prelog stereo-specificity 60 c1hj0A_ not modelled 7.5 17 PDB header:actin binding peptide Chain: A: PDB Molecule:thymosin beta9; PDBTitle: thymosin beta9 61 c2iucB_ not modelled 7.3 25 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: structure of alkaline phosphatase from the antarctic2 bacterium tab5 62 c1qcrD_ not modelled 7.3 8 PDB header: PDB COMPND: 63 c3othB_ not modelled 7.3 11 PDB header:transferase/antibiotic Chain: B: PDB Molecule:calg1; PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form 64 d1xi8a3 not modelled 7.1 21 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 65 c3g73A_ not modelled 7.0 17 PDB header:transcription/dna Chain: A: PDB Molecule:forkhead box protein m1; PDBTitle: structure of the foxm1 dna binding 66 c1eb0A_ not modelled 7.0 13 PDB header:chaperone Chain: A: PDB Molecule:urease accessory protein uree; PDBTitle: crystal structure of bacillus pasteurii uree at 1.85 a,2 phased by siras. type i crystal form. 67 c2giaB_ not modelled 7.0 63 PDB header:translation Chain: B: PDB Molecule:mitochondrial rna-binding protein 1; PDBTitle: crystal structures of trypanosoma bruciei mrp1/mrp2 68 d2giab1 not modelled 7.0 63 Fold:ssDNA-binding transcriptional regulator domain Superfamily:ssDNA-binding transcriptional regulator domain Family:Guide RNA binding protein gBP 69 d1idra_ not modelled 6.9 7 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 70 d1bdba_ not modelled 6.9 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 71 c1c94B_ not modelled 6.9 63 PDB header:gene regulation Chain: B: PDB Molecule:retro-gcn4 leucine zipper; PDBTitle: reversing the sequence of the gcn4 leucine zipper does not2 affect its fold. 72 d2o23a1 not modelled 6.8 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 73 d1rh6a_ not modelled 6.7 15 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Excisionase-like 74 d1ae1a_ not modelled 6.7 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 75 d1d1la_ not modelled 6.6 26 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 76 c2x4mD_ not modelled 6.6 27 PDB header:hydrolase Chain: D: PDB Molecule:coagulase/fibrinolysin; PDBTitle: yersinia pestis plasminogen activator pla 77 c3cxtA_ not modelled 6.5 26 PDB header:oxidoreductase Chain: A: PDB Molecule:dehydrogenase with different specificities; PDBTitle: quaternary complex structure of gluconate 5-dehydrogenase from2 streptococcus suis type 2 78 c2wdzD_ not modelled 6.4 16 PDB header:oxidoreductase Chain: D: PDB Molecule:short-chain dehydrogenase/reductase; PDBTitle: crystal structure of the short chain dehydrogenase2 galactitol-dehydrogenase (gatdh) of rhodobacter3 sphaeroides in complex with nad+ and 1,2-pentandiol 79 d2gm3a1 not modelled 6.4 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 80 c2o2sA_ not modelled 6.4 12 PDB header:oxidoreductase Chain: A: PDB Molecule:enoyl-acyl carrier reductase; PDBTitle: the structure of t. gondii enoyl acyl carrier protein reductase in2 complex with nad and triclosan 81 c3nswA_ not modelled 6.3 60 PDB header:immune system Chain: A: PDB Molecule:excretory-secretory protein 2; PDBTitle: crystal structure of ancylostoma ceylanicum excretory-secretory2 protein 2 82 c3hluA_ not modelled 6.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein duf2179; PDBTitle: crystal structure of uncharacterized protein conserved in bacteria2 duf2179 from eubacterium ventriosum 83 c3gafF_ not modelled 6.2 17 PDB header:oxidoreductase Chain: F: PDB Molecule:7-alpha-hydroxysteroid dehydrogenase; PDBTitle: 2.2a crystal structure of 7-alpha-hydroxysteroid2 dehydrogenase from brucella melitensis 84 c3cwbQ_ not modelled 6.1 8 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 85 d1d5va_ not modelled 6.1 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 86 c2dkzA_ not modelled 6.1 12 PDB header:signaling protein Chain: A: PDB Molecule:hypothetical protein loc64762; PDBTitle: solution structure of the sam_pnt-domain of the2 hypothetical protein loc64762 87 c2jpiA_ not modelled 6.0 17 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical protein; PDBTitle: chemical shift assignments of pa4090 from pseudomonas2 aeruginosa 88 c3gdfA_ not modelled 6.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:probable nadp-dependent mannitol dehydrogenase; PDBTitle: crystal structure of the nadp-dependent mannitol dehydrogenase from2 cladosporium herbarum. 89 d1tx2a_ not modelled 5.9 12 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 90 c1tx2A_ not modelled 5.9 12 PDB header:transferase Chain: A: PDB Molecule:dhps, dihydropteroate synthase; PDBTitle: dihydropteroate synthetase, with bound inhibitor manic, from bacillus2 anthracis 91 d4croa_ not modelled 5.9 26 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 92 d1d7oa_ not modelled 5.8 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 93 c3a44D_ not modelled 5.8 0 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 94 d1fmca_ not modelled 5.8 29 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 95 d1gpqa_ not modelled 5.7 18 Fold:Inhibitor of vertebrate lysozyme, Ivy Superfamily:Inhibitor of vertebrate lysozyme, Ivy Family:Inhibitor of vertebrate lysozyme, Ivy 96 d2hfha_ not modelled 5.7 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 97 c3rihB_ not modelled 5.7 19 PDB header:oxidoreductase Chain: B: PDB Molecule:short chain dehydrogenase or reductase; PDBTitle: crystal structure of a putative short chain dehydrogenase or reductase2 from mycobacterium abscessus 98 c2b99A_ not modelled 5.7 18 PDB header:transferase Chain: A: PDB Molecule:riboflavin synthase; PDBTitle: crystal structure of an archaeal pentameric riboflavin2 synthase complex with a substrate analog inhibitor 99 c3rkrC_ not modelled 5.6 20 PDB header:oxidoreductase Chain: C: PDB Molecule:short chain oxidoreductase; PDBTitle: crystal structure of a metagenomic short-chain oxidoreductase (sdr) in2 complex with nadp

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0