Email l.a.kelley@imperial.ac.uk Description P38392 Date Thu Jan 5 11:58:06 GMT 2012 Unique Job ID 32ae6d22fe9febba

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1htrP_ 46.3 26 PDB header:aspartyl protease Chain: P: PDB Molecule:progastricsin (pro segment); PDBTitle: crystal and molecular structures of human progastricsin at 1.622 angstroms resolution 2 c2wa1A_ 38.9 14 PDB header:transferase Chain: A: PDB Molecule:non-structural protein 5; PDBTitle: structure of the methyltransferase domain from modoc virus,2 a flavivirus with no known vector (nkv) 3 d2d1ha1 35.5 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:TrmB-like 4 c1hsjA_ 32.3 14 PDB header:transcription/sugar binding protein Chain: A: PDB Molecule:fusion protein consisting of staphylococcus PDBTitle: sarr mbp fusion structure 5 d2frha1 31.5 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 6 d2etha1 24.4 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 7 d1stza1 22.7 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Heat-inducible transcription repressor HrcA, N-terminal domain 8 d1sfxa_ 22.5 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:TrmB-like 9 d1jhfa1 20.8 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LexA repressor, N-terminal DNA-binding domain 10 c2px2B_ 20.5 15 PDB header:transferase Chain: B: PDB Molecule:genome polyprotein [contains: capsid protein c PDBTitle: crystal structure of the murray valley encephalitis virus2 ns5 2'-o methyltransferase domain in complex with sah3 (monoclinic form 1) 11 d1u61a_ 20.3 19 Fold:RNase III domain-like Superfamily:RNase III domain-like Family:RNase III catalytic domain-like 12 c3ctaA_ 19.5 19 PDB header:transferase Chain: A: PDB Molecule:riboflavin kinase; PDBTitle: crystal structure of riboflavin kinase from thermoplasma2 acidophilum 13 d1lnwa_ 18.1 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 14 c1stzB_ 16.8 29 PDB header:transcription Chain: B: PDB Molecule:heat-inducible transcription repressor hrca homolog; PDBTitle: crystal structure of a hypothetical protein at 2.2 a resolution 15 c2colA_ 16.1 17 PDB header:lyase/metal binding protein Chain: A: PDB Molecule:bifunctional hemolysin-adenylate cyclase; PDBTitle: crystal structure analysis of cyaa/c-cam with pyrophosphate 16 d1s58a_ 15.7 33 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Parvoviridae-like VP 17 d1ub9a_ 15.6 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 18 c1ykuB_ 14.8 16 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein pxo2-61; PDBTitle: crystal structure of a sensor domain homolog 19 d1t3la2 14.1 29 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 20 d1p4xa2 12.7 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 21 d2fbha1 not modelled 12.7 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 22 c1z1cA_ not modelled 12.3 24 PDB header:virus/dna Chain: A: PDB Molecule:coat protein vp2; PDBTitle: structural determinants of tissue tropism and in vivo2 pathogenicity for the parvovirus minute virus of mice 23 d1nava_ not modelled 12.3 11 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 24 c3da5A_ not modelled 11.5 42 PDB header:rna binding protein Chain: A: PDB Molecule:argonaute; PDBTitle: crystal structure of piwi/argonaute/zwille(paz) domain from2 thermococcus thioreducens 25 c3h8dE_ not modelled 11.3 42 PDB header:motor protein/signaling protein Chain: E: PDB Molecule:disabled homolog 2; PDBTitle: crystal structure of myosin vi in complex with dab2 peptide 26 c3u5gK_ not modelled 11.0 21 PDB header:ribosome Chain: K: PDB Molecule:40s ribosomal protein s10-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 27 d1mvma_ not modelled 10.8 24 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Parvoviridae-like VP 28 d1k3va_ not modelled 10.7 33 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Parvoviridae-like VP 29 c1k3vA_ not modelled 10.7 33 PDB header:virus Chain: A: PDB Molecule:capsid protein vp2; PDBTitle: porcine parvovirus capsid 30 c3cjnA_ not modelled 10.5 15 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of transcriptional regulator, marr family, from2 silicibacter pomeroyi 31 d2gmga1 not modelled 10.5 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PF0610-like 32 c3nttA_ not modelled 10.3 18 PDB header:virus Chain: A: PDB Molecule:capsid protein; PDBTitle: structural insights of adeno-associated virus 5. a gene therapy vector2 for cystic fibrosis 33 d1hsja1 not modelled 10.2 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 34 d1k8ta_ not modelled 10.0 13 Fold:Adenylylcyclase toxin (the edema factor) Superfamily:Adenylylcyclase toxin (the edema factor) Family:Adenylylcyclase toxin (the edema factor) 35 c3dkxA_ not modelled 9.9 18 PDB header:replication Chain: A: PDB Molecule:replication protein repb; PDBTitle: crystal structure of the replication initiator protein2 encoded on plasmid pmv158 (repb), trigonal form, to 2.7 ang3 resolution 36 c2xzm7_ not modelled 9.8 14 PDB header:ribosome Chain: 7: PDB Molecule:plectin/s10 domain containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 37 d1c8da_ not modelled 9.6 22 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Parvoviridae-like VP 38 c3kieF_ not modelled 9.6 12 PDB header:virus Chain: F: PDB Molecule:capsid protein vp1; PDBTitle: crystal structure of adeno-associated virus serotype 3b 39 d1lp3a_ not modelled 9.6 12 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Parvoviridae-like VP 40 c2j8pA_ not modelled 9.1 19 PDB header:nuclear protein Chain: A: PDB Molecule:cleavage stimulation factor 64 kda subunit; PDBTitle: nmr structure of c-terminal domain of human cstf-64 41 c2g8gA_ not modelled 9.0 12 PDB header:virus Chain: A: PDB Molecule:capsid; PDBTitle: structurally mapping the diverse phenotype of adeno-2 associated virus serotype 4 42 c4a5mH_ not modelled 8.7 22 PDB header:transcription Chain: H: PDB Molecule:uncharacterized hth-type transcriptional regulator yybr; PDBTitle: redox regulator hypr in its oxidized form 43 c3bjaA_ not modelled 8.5 16 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family, putative; PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution 44 c2jtvA_ not modelled 7.9 18 PDB header:structural genomics Chain: A: PDB Molecule:protein of unknown function; PDBTitle: solution structure of protein rpa3401, northeast structural genomics2 consortium target rpt7, ontario center for structural proteomics3 target rp3384 45 c3pmdA_ not modelled 7.3 16 PDB header:lipid binding protein Chain: A: PDB Molecule:conserved domain protein; PDBTitle: crystal structure of the sporulation inhibitor pxo1-118 from bacillus2 anthracis 46 c1xfzA_ not modelled 7.2 13 PDB header:lyase/metal binding protein Chain: A: PDB Molecule:calmodulin-sensitive adenylate cyclase; PDBTitle: crystal structure of anthrax edema factor (ef) in complex2 with calmodulin in the presence of 1 millimolar3 exogenously added calcium chloride 47 c1xfuE_ not modelled 7.2 13 PDB header:lyase/metal binding protein Chain: E: PDB Molecule:calmodulin-sensitive adenylate cyclase; PDBTitle: crystal structure of anthrax edema factor (ef) truncation2 mutant, ef-delta 64 in complex with calmodulin 48 c2gslE_ not modelled 7.2 15 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:hypothetical protein; PDBTitle: x-ray crystal structure of protein fn1578 from fusobacterium2 nucleatum. northeast structural genomics consortium target nr1. 49 d2i9ca1 not modelled 6.9 8 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:RPA1889-like 50 d1bh9b_ not modelled 6.6 33 Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs 51 d2j5pa1 not modelled 6.6 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FtsK C-terminal domain-like 52 c2oqgA_ not modelled 6.5 8 PDB header:transcription Chain: A: PDB Molecule:possible transcriptional regulator, arsr family protein; PDBTitle: arsr-like transcriptional regulator from rhodococcus sp. rha1 53 d1okra_ not modelled 6.3 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 54 c3obhA_ not modelled 6.2 36 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: x-ray crystal structure of protein sp_0782 (7-79) from streptococcus2 pneumoniae. northeast structural genomics consortium target spr104 55 d1dmga_ not modelled 6.2 13 Fold:Ribosomal protein L4 Superfamily:Ribosomal protein L4 Family:Ribosomal protein L4 56 c2qenA_ not modelled 6.2 14 PDB header:unknown function Chain: A: PDB Molecule:walker-type atpase; PDBTitle: the walker-type atpase paby2304 of pyrococcus abyssi 57 d2b50a1 not modelled 6.1 12 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 58 c3f6oB_ not modelled 6.1 10 PDB header:transcription regulator Chain: B: PDB Molecule:probable transcriptional regulator, arsr family PDBTitle: crystal structure of arsr family transcriptional regulator,2 rha00566 59 c2w9yA_ not modelled 5.9 14 PDB header:lipid transport Chain: A: PDB Molecule:fatty acid/retinol binding protein protein 7, PDBTitle: the structure of the lipid binding protein ce-far-7 from2 caenorhabditis elegans 60 d1y88a1 not modelled 5.9 23 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:Hypothetical protein AF1548, C-terminal domain 61 c1fpvA_ not modelled 5.9 22 PDB header:virus Chain: A: PDB Molecule:feline panleukopenia virus (strain b) viral PDBTitle: structure determination of feline panleukopenia virus empty2 particles 62 c2b1wA_ not modelled 5.8 17 PDB header:apoptosis Chain: A: PDB Molecule:caspase recruitment domain protein 4; PDBTitle: solution structure of the nod1 caspase activating and recruitment2 domain 63 c3g3zA_ not modelled 5.8 20 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis 64 d1q3ma_ not modelled 5.8 44 Fold:GLA-domain Superfamily:GLA-domain Family:GLA-domain 65 d1q8ha_ not modelled 5.7 44 Fold:GLA-domain Superfamily:GLA-domain Family:GLA-domain 66 c1q8hA_ not modelled 5.7 44 PDB header:metal binding protein Chain: A: PDB Molecule:osteocalcin; PDBTitle: crystal structure of porcine osteocalcin 67 d2olua1 not modelled 5.7 16 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:PBP transglycosylase domain-like 68 d1un2a_ not modelled 5.6 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 69 d1pq9a_ not modelled 5.4 11 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 70 c3elkA_ not modelled 5.3 15 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator ta0346; PDBTitle: crystal structure of putative transcriptional regulator ta0346 from2 thermoplasma acidophilum 71 c2nyxB_ not modelled 5.3 10 PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404; PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis