PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3dkxA_

Fold library id	PDB Header	Molecule	Title
c3dkxA_	PDB header: replication	Chain: A: PDB Molecule: replication protein repb;	PDBTitle: crystal structure of the replication initiator protein2 encoded on plasmid pmv158 (repb), trigonal form, to 2.7 ang3 resolution

Links to external resources
Added to library: Sat Aug 28 16:56:38 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K E K A R Y F T F L L Y P E S I P S D W E L K L E T L G V P M A I S P L H D K D K S S I K G Q K Y K K A H Y H V L Y I A K N P V T A D S V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S
T T G G G G
S
B
B
S S
S S S B
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K K I K L L L G E K S L A M V Q V V L N V E N M Y L Y L T H E S K D A I A K K K H V Y D K A D I K L I N N F D I D R Y V T L D V E E K T E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S B
S
T T T T
S T T T T T T T
S T T
T T
G G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . .

Sequence F N V V V S L I R A Y T L Q N I F D L Y D F I D E N G E T Y G L T I N L V N E V I A G K T G F M K L L F D G A Y Q R S K R G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T
T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	E	K	A	R	Y	F	T	F	L	L	Y	P	E	S	I	P	S	D	W	E	L	K	L	E	T	L	G	V	P	M	A	I	S	P	L	H	D	K	D	K	S	S	I	K	G	Q	K	Y	K	K	A	H	Y	H	V	L	Y	I	A	K	N	P	V	T	A	D	S	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													G	G	G	S		T	T					G	G	G	G								S		B				B		S	S		S	S	S	B				B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	K	I	K	L	L	L	G	E	K	S	L	A	M	V	Q	V	V	L	N	V	E	N	M	Y	L	Y	L	T	H	E	S	K	D	A	I	A	K	K	K	H	V	Y	D	K	A	D	I	K	L	I	N	N	F	D	I	D	R	Y	V	T	L	D	V	E	E	K	T	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	S	B							S								T	T	T	T		S	T	T	T	T	T	T	T						S	T	T					T	T			G	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Sequence	F	N	V	V	V	S	L	I	R	A	Y	T	L	Q	N	I	F	D	L	Y	D	F	I	D	E	N	G	E	T	Y	G	L	T	I	N	L	V	N	E	V	I	A	G	K	T	G	F	M	K	L	L	F	D	G	A	Y	Q	R	S	K	R	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T			S																T											T	T																	T	T