Email l.a.kelley@imperial.ac.uk Description P77306 Date Thu Jan 5 12:27:33 GMT 2012 Unique Job ID 30c5b449a7faa4ff

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1wina_ 99.8 16 Fold:EF-Ts domain-like Superfamily:Band 7/SPFH domain Family:Band 7/SPFH domain 2 c3bk6C_ 99.8 21 PDB header:membrane protein Chain: C: PDB Molecule:ph stomatin; PDBTitle: crystal structure of a core domain of stomatin from2 pyrococcus horikoshii 3 c2rpbA_ 99.7 16 PDB header:membrane protein Chain: A: PDB Molecule:hypothetical membrane protein; PDBTitle: the solution structure of membrane protein 4 c2zv4O_ 99.3 10 PDB header:structural protein Chain: O: PDB Molecule:major vault protein; PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution 5 d2axtj1 78.4 24 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein J, PsbJ Family:PsbJ-like 6 c2kncA_ 74.5 16 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 7 c1y4cA_ 72.0 13 PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp 8 c2k1aA_ 70.6 13 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 9 c2jwaA_ 54.1 19 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 10 c3peuB_ 39.6 18 PDB header:hydrolase Chain: B: PDB Molecule:nucleoporin gle1; PDBTitle: s. cerevisiae dbp5 l327v c-terminal domain bound to gle1 h337r and ip6 11 c3mk7F_ 32.4 6 PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase 12 c1xmeB_ 32.1 5 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: structure of recombinant cytochrome ba3 oxidase from thermus2 thermophilus 13 c3dktD_ 31.1 16 PDB header:structural protein/virus like particle Chain: D: PDB Molecule:maritimacin; PDBTitle: crystal structure of thermotoga maritima encapsulin 14 c3hd7A_ 30.3 20 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 15 c2e0zA_ 25.4 24 PDB header:virus like particle Chain: A: PDB Molecule:virus-like particle; PDBTitle: crystal structure of virus-like particle from pyrococcus2 furiosus 16 d2axth1 21.3 23 Fold:Single transmembrane helix Superfamily:Photosystem II 10 kDa phosphoprotein PsbH Family:PsbH-like 17 c3hfxA_ 18.4 20 PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter 18 c2w8aC_ 17.5 23 PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate 19 c1cn3F_ 17.4 33 PDB header:viral protein Chain: F: PDB Molecule:fragment of coat protein vp2; PDBTitle: interaction of polyomavirus internal protein vp2 with major2 capsid protein vp1 and implications for participation of3 vp2 in viral entry 20 c2kncB_ 15.9 12 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 21 c3kdpG_ not modelled 13.8 22 PDB header:hydrolase Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 22 c3kdpH_ not modelled 13.8 22 PDB header:hydrolase Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 23 c3o2qB_ not modelled 11.7 29 PDB header:hydrolase Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase PDBTitle: crystal structure of the human symplekin-ssu72-ctd phosphopeptide2 complex 24 c1h4uA_ not modelled 10.9 10 PDB header:extracellular matrix protein Chain: A: PDB Molecule:nidogen-1; PDBTitle: domain g2 of mouse nidogen-1 25 c3fdfA_ not modelled 10.8 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fr253; PDBTitle: crystal structure of the serine phosphatase of rna2 polymerase ii ctd (ssu72 superfamily) from drosophila3 melanogaster. orthorhombic crystal form. northeast4 structural genomics consortium target fr253. 26 c3o2sB_ not modelled 9.9 29 PDB header:hydrolase Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase PDBTitle: crystal structure of the human symplekin-ssu72 complex 27 c1zzaA_ not modelled 9.6 15 PDB header:membrane protein Chain: A: PDB Molecule:stannin; PDBTitle: solution nmr structure of the membrane protein stannin 28 c3mk7B_ not modelled 9.3 6 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit o; PDBTitle: the structure of cbb3 cytochrome oxidase 29 d2ix0a3 not modelled 8.7 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 30 c1iijA_ not modelled 8.2 13 PDB header:signaling protein Chain: A: PDB Molecule:erbb-2 receptor protein-tyrosine kinase; PDBTitle: solution structure of the neu/erbb-2 membrane spanning2 segment 31 c2jo1A_ not modelled 8.0 12 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 32 c1fftG_ not modelled 7.7 15 PDB header:oxidoreductase Chain: G: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli 33 c2l2tA_ not modelled 7.6 4 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain 34 d2o4ta1 not modelled 7.5 11 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 35 d2pila_ not modelled 7.2 18 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 36 d1oqwa_ not modelled 7.2 27 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 37 c3fcmA_ not modelled 7.1 7 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a nudix hydrolase from clostridium2 perfringens 38 c3ipdB_ not modelled 7.0 26 PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21 39 c3sokB_ not modelled 7.0 23 PDB header:cell adhesion Chain: B: PDB Molecule:fimbrial protein; PDBTitle: dichelobacter nodosus pilin fima 40 c2jp3A_ not modelled 6.8 6 PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles 41 c3a0bL_ not modelled 6.8 5 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 42 d1jb0i_ not modelled 6.7 22 Fold:Single transmembrane helix Superfamily:Subunit VIII of photosystem I reaction centre, PsaI Family:Subunit VIII of photosystem I reaction centre, PsaI 43 d2r6gf1 not modelled 6.7 13 Fold:MalF N-terminal region-like Superfamily:MalF N-terminal region-like Family:MalF N-terminal region-like 44 c2j7aC_ not modelled 6.6 9 PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris 45 c1s5ll_ not modelled 6.5 5 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 46 c3a0hl_ not modelled 6.5 5 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex 47 c3a0hL_ not modelled 6.5 5 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex 48 c1s5lL_ not modelled 6.5 5 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 49 c3kziL_ not modelled 6.5 5 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii 50 c2axtL_ not modelled 6.5 5 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 51 c2axtl_ not modelled 6.5 5 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 52 c3arcL_ not modelled 6.5 5 PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 53 c3bz2L_ not modelled 6.5 5 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 22 of 2). this file contains second monomer of psii dimer 54 c3prrL_ not modelled 6.5 5 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer 55 c3a0bl_ not modelled 6.5 5 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 56 c3prqL_ not modelled 6.5 5 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer 57 d2axtl1 not modelled 6.5 5 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein L, PsbL Family:PsbL-like 58 c3bz1L_ not modelled 6.5 5 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer 59 d1fftb2 not modelled 6.5 6 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 60 c2zxeG_ not modelled 6.2 35 PDB header:hydrolase/transport protein Chain: G: PDB Molecule:phospholemman-like protein; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 61 c1p58F_ not modelled 5.8 21 PDB header:virus Chain: F: PDB Molecule:envelope protein m; PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction 62 d1id3b_ not modelled 5.7 15 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 63 c2btwA_ not modelled 5.7 17 PDB header:transferase Chain: A: PDB Molecule:alr0975 protein; PDBTitle: crystal structure of alr0975 64 c3arcl_ not modelled 5.7 5 PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 65 c2l16A_ not modelled 5.7 30 PDB header:protein transport Chain: A: PDB Molecule:sec-independent protein translocase protein tatad; PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles 66 c1yewI_ not modelled 5.6 10 PDB header:oxidoreductase, membrane protein Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit; PDBTitle: crystal structure of particulate methane monooxygenase 67 c3rgbA_ not modelled 5.6 10 PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase subunit b2; PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath) 68 d1uxca_ not modelled 5.6 19 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 69 d1j0ha1 not modelled 5.6 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 70 d2cnza1 not modelled 5.5 15 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits 71 c2ks1B_ not modelled 5.5 15 PDB header:transferase Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation 72 d1jvaa3 not modelled 5.4 21 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 73 d2bu3a1 not modelled 5.4 17 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Phytochelatin synthase 74 d3dtub2 not modelled 5.3 3 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 75 c2wtoB_ not modelled 5.3 9 PDB header:metal binding protein Chain: B: PDB Molecule:orf131 protein; PDBTitle: crystal structure of apo-form czce from c. metallidurans ch34 76 c3cf6E_ not modelled 5.3 17 PDB header:signaling protein/gtp-binding protein Chain: E: PDB Molecule:rap guanine nucleotide exchange factor (gef) 4; PDBTitle: structure of epac2 in complex with cyclic-amp and rap 77 c3sbtB_ not modelled 5.3 20 PDB header:splicing Chain: B: PDB Molecule:a1 cistron-splicing factor aar2; PDBTitle: crystal structure of a aar2-prp8 complex 78 d2ix0a1 not modelled 5.2 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 79 c3f6aA_ not modelled 5.1 14 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens 80 d2fhza1 not modelled 5.1 33 Fold:ImmE5-like Superfamily:ImmE5-like Family:ImmE5-like 81 c2kluA_ not modelled 5.0 15 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 82 c1bhbA_ not modelled 5.0 12 PDB header:photoreceptor Chain: A: PDB Molecule:bacteriorhodopsin; PDBTitle: three-dimensional structure of (1-71) bacterioopsin2 solubilized in methanol-chloroform and sds micelles3 determined by 15n-1h heteronuclear nmr spectroscopy 83 d3ehbb2 not modelled 5.0 8 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region