Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	D	L	N	V	V	D	S	I	N	G	A	G	S	W	L	V	A	N	Q	A	L	L	L	S	Y	A	V	N	I	V	A	A	L	A	I	I	I	V	G	L	I	I	A	R	M	I	S	N	A	V	N	R	L	M	I	S	R	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?																																																						?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	D	A	T	V	A	D	F	L	S	A	L	V	R	Y	G	I	I	A	F	T	L	I	A	A	L	G	R	V	G	V	Q	T	A	S	V	I	A	V	L	G	A	A	G	L	A	V	G	L	A	L	Q	G	S	L	S	N	L	A	A
Secondary structure
SS confidence
Disorder		?	?																											?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	V	L	L	V	M	F	R	P	F	R	A	G	E	Y	V	D	L	G	G	V	A	G	T	V	L	S	V	Q	I	F	S	T	T	M	R	T	A	D	G	K	I	I	V	I	P	N	G	K	I	I	A	G	N	I	I	N	F	S	R
Secondary structure
SS confidence
Disorder																																																			?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	P	V	R	R	N	E	F	I	I	G	V	A	Y	D	S	D	I	D	Q	V	K	Q	I	L	T	N	I	I	Q	S	E	D	R	I	L	K	D	R	E	M	T	V	R	L	N	E	L	G	A	S	S	I	N	F	V	V	R	V	W
Secondary structure
SS confidence
Disorder																																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Sequence		S	N	S	G	D	L	Q	N	V	Y	W	D	V	L	E	R	I	K	R	E	F	D	A	A	G	I	S	F	P	Y	P	Q	M	D	V	N	F	K	R	V	K	E	D	K	A	A
Secondary structure
SS confidence
Disorder																																									?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2vv5 chain D Region: 25 - 280 Aligned: 256 Modelled: 256 Confidence: 100.0% Identity: 100% PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs Phyre2 PDB 2vv5 chain A domain 2 Region: 180 - 280 Aligned: 101 Modelled: 101 Confidence: 99.8% Identity: 100% Fold: Ferredoxin-like Superfamily: Mechanosensitive channel protein MscS (YggB), C-terminal domain Family: Mechanosensitive channel protein MscS (YggB), C-terminal domain Phyre2 PDB 2vv5 chain A domain 1 Region: 114 - 179 Aligned: 66 Modelled: 66 Confidence: 99.7% Identity: 100% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Mechanosensitive channel protein MscS (YggB), middle domain Phyre2 PDB 2vv5 chain A domain 3 Region: 27 - 112 Aligned: 86 Modelled: 86 Confidence: 99.0% Identity: 99% Fold: Mechanosensitive channel protein MscS (YggB), transmembrane region Superfamily: Mechanosensitive channel protein MscS (YggB), transmembrane region Family: Mechanosensitive channel protein MscS (YggB), transmembrane region Phyre2 PDB 1nz9 chain A Region: 129 - 165 Aligned: 37 Modelled: 37 Confidence: 80.4% Identity: 27% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: N-utilization substance G protein NusG, C-terminal domain Phyre2 PDB 2e6z chain A Region: 127 - 170 Aligned: 44 Modelled: 44 Confidence: 78.1% Identity: 25% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 Phyre2 PDB 1npp chain A domain 2 Region: 129 - 165 Aligned: 37 Modelled: 37 Confidence: 76.5% Identity: 27% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: N-utilization substance G protein NusG, C-terminal domain Phyre2 PDB 2kvq chain G Region: 129 - 165 Aligned: 37 Modelled: 37 Confidence: 75.9% Identity: 22% PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex Phyre2 PDB 2jvv chain A Region: 129 - 165 Aligned: 37 Modelled: 37 Confidence: 75.9% Identity: 22% PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain Phyre2 PDB 2do3 chain A domain 1 Region: 126 - 165 Aligned: 40 Modelled: 40 Confidence: 74.2% Identity: 18% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: SPT5 KOW domain-like Phyre2 PDB 2zkr chain T Region: 129 - 166 Aligned: 38 Modelled: 38 Confidence: 73.9% Identity: 24% PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 2hqh chain A domain 1 Region: 129 - 149 Aligned: 21 Modelled: 21 Confidence: 70.6% Identity: 43% Fold: SH3-like barrel Superfamily: Cap-Gly domain Family: Cap-Gly domain Phyre2 PDB 2vfy chain A Region: 178 - 275 Aligned: 97 Modelled: 98 Confidence: 60.6% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:akap18 delta; PDBTitle: akap18 delta central domain Phyre2 PDB 3p8b chain B Region: 129 - 149 Aligned: 21 Modelled: 21 Confidence: 58.1% Identity: 19% PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 Phyre2 PDB 1whm chain A Region: 128 - 149 Aligned: 22 Modelled: 22 Confidence: 51.2% Identity: 32% Fold: SH3-like barrel Superfamily: Cap-Gly domain Family: Cap-Gly domain Phyre2 PDB 1vqo chain Q domain 1 Region: 128 - 162 Aligned: 35 Modelled: 35 Confidence: 49.4% Identity: 34% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: Ribosomal proteins L24p and L21e Phyre2 PDB 3mlc chain C Region: 188 - 283 Aligned: 94 Modelled: 96 Confidence: 48.7% Identity: 15% PDB header:isomerase Chain: C: PDB Molecule:fg41 malonate semialdehyde decarboxylase; PDBTitle: crystal structure of fg41msad inactivated by 3-chloropropiolate Phyre2 PDB 2cqa chain A domain 1 Region: 125 - 149 Aligned: 25 Modelled: 25 Confidence: 48.7% Identity: 12% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: TIP49 domain Phyre2 PDB 1t9h chain A domain 1 Region: 132 - 152 Aligned: 21 Modelled: 21 Confidence: 46.8% Identity: 19% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 4a1c chain S Region: 129 - 149 Aligned: 21 Modelled: 21 Confidence: 45.7% Identity: 33% PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. Phyre2 1 c2vv5D_ 2 d2vv5a2 3 d2vv5a1 4 d2vv5a3 5 d1nz9a_ 6 c2e6zA_ 7 d1nppa2 8 c2kvqG_ 9 c2jvvA_ 10 d2do3a1 11 c2zkrt_ 12 d2hqha1 13 c2vfyA_ 14 c3p8bB_ 15 d1whma_ 16 d1vqoq1 17 c3mlcC_ 18 d2cqaa1 19 d1t9ha1 20 c4a1cS_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2vv5D_ 100.0 100 PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs 2 d2vv5a2 99.8 100 Fold:Ferredoxin-like Superfamily:Mechanosensitive channel protein MscS (YggB), C-terminal domain Family:Mechanosensitive channel protein MscS (YggB), C-terminal domain 3 d2vv5a1 99.7 100 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain 4 d2vv5a3 99.0 99 Fold:Mechanosensitive channel protein MscS (YggB), transmembrane region Superfamily:Mechanosensitive channel protein MscS (YggB), transmembrane region Family:Mechanosensitive channel protein MscS (YggB), transmembrane region 5 d1nz9a_ 80.4 27 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 6 c2e6zA_ 78.1 25 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 7 d1nppa2 76.5 27 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 8 c2kvqG_ 75.9 22 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 9 c2jvvA_ 75.9 22 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 10 d2do3a1 74.2 18 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 11 c2zkrt_ 73.9 24 PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 12 d2hqha1 70.6 43 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 13 c2vfyA_ 60.6 16 PDB header:hydrolase Chain: A: PDB Molecule:akap18 delta; PDBTitle: akap18 delta central domain 14 c3p8bB_ 58.1 19 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 15 d1whma_ 51.2 32 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 16 d1vqoq1 49.4 34 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 17 c3mlcC_ 48.7 15 PDB header:isomerase Chain: C: PDB Molecule:fg41 malonate semialdehyde decarboxylase; PDBTitle: crystal structure of fg41msad inactivated by 3-chloropropiolate 18 d2cqaa1 48.7 12 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TIP49 domain 19 d1t9ha1 46.8 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 20 c4a1cS_ 45.7 33 PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 21 d2p13a1 not modelled 45.7 32 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 22 d1vqot1 not modelled 45.2 38 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 23 d2cp6a1 not modelled 45.0 35 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 24 c2dxcG_ not modelled 44.2 36 PDB header:hydrolase Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha; PDBTitle: recombinant thiocyanate hydrolase, fully-matured form 25 d2e3ia1 not modelled 42.5 35 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 26 d1u0la1 not modelled 42.0 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 27 c1m1gB_ not modelled 40.5 33 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) 28 c3iz5Y_ not modelled 39.6 33 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 29 d2coya1 not modelled 38.5 48 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 30 d1whka_ not modelled 38.5 26 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 31 d2plsa1 not modelled 38.4 10 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 32 d1whja_ not modelled 37.3 24 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 33 d2coza1 not modelled 36.5 23 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 34 c3qz9D_ not modelled 35.1 40 PDB header:lyase Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida. 35 c2e4hA_ not modelled 33.6 36 PDB header:structural protein Chain: A: PDB Molecule:restin; PDBTitle: solution structure of cytoskeletal protein in complex with2 tubulin tail 36 d1v6ga2 not modelled 33.2 31 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 37 d2o1ra1 not modelled 32.5 23 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 38 c1t9hA_ not modelled 32.4 17 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. 39 d2cp5a1 not modelled 32.2 35 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 40 d2cp0a1 not modelled 32.0 30 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 41 d1v29b_ not modelled 31.0 25 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 42 c3dedB_ not modelled 30.4 19 PDB header:membrane protein Chain: B: PDB Molecule:probable hemolysin; PDBTitle: c-terminal domain of probable hemolysin from chromobacterium violaceum 43 d2e3ha1 not modelled 30.2 35 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 44 c2z0wA_ not modelled 29.9 35 PDB header:protein binding Chain: A: PDB Molecule:cap-gly domain-containing linker protein 4; PDBTitle: crystal structure of the 2nd cap-gly domain in human restin-2 like protein 2 reveals a swapped-dimer 45 d3deda1 not modelled 29.3 19 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 46 c2zkrq_ not modelled 28.9 28 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule:rna expansion segment es31 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 47 d2cp2a1 not modelled 28.6 35 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 48 c2yv5A_ not modelled 28.3 19 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 49 d1h6za2 not modelled 27.4 32 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 50 d2cowa1 not modelled 27.3 36 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 51 d1khia1 not modelled 25.8 25 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 52 d2nqwa1 not modelled 25.5 13 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 53 d1whha_ not modelled 25.3 22 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 54 d1ugpb_ not modelled 24.9 35 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 55 c3iz5U_ not modelled 24.5 31 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 56 d1e32a3 not modelled 24.3 24 Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like 57 c4a1aP_ not modelled 23.6 38 PDB header:ribosome Chain: P: PDB Molecule:60s ribosomal protein l21; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 58 c2k4kA_ not modelled 23.2 15 PDB header:rna binding protein Chain: A: PDB Molecule:general stress protein 13; PDBTitle: solution structure of gsp13 from bacillus subtilis 59 c1u0lB_ not modelled 22.8 17 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 60 c2xhcA_ not modelled 22.7 19 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) 61 d2cp3a1 not modelled 22.0 38 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 62 d1kbla2 not modelled 21.6 29 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 63 c3izcU_ not modelled 21.3 28 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein rpl21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 64 c3cnrA_ not modelled 21.1 21 PDB header:unknown function Chain: A: PDB Molecule:type iv fimbriae assembly protein; PDBTitle: crystal structure of pilz (xac1133) from xanthomonas2 axonopodis pv citri 65 d1bkba1 not modelled 20.1 22 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 66 d2qdyb1 not modelled 18.9 32 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 67 d1iz6a1 not modelled 18.7 9 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 68 d1vbga2 not modelled 18.6 33 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 69 d2eifa1 not modelled 18.6 22 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 70 d1x6oa1 not modelled 18.2 22 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 71 d2o3ga1 not modelled 18.2 19 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 72 c2rcnA_ not modelled 17.5 24 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. 73 c2k52A_ not modelled 17.0 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1198; PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b 74 d1i9ga_ not modelled 17.0 50 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:tRNA(1-methyladenosine) methyltransferase-like 75 c3ftjA_ not modelled 16.5 16 PDB header:hydrolase Chain: A: PDB Molecule:macrolide export atp-binding/permease protein PDBTitle: crystal structure of the periplasmic region of macb from2 actinobacillus actinomycetemcomitans 76 d1ppje2 not modelled 16.5 16 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 77 c1s1iQ_ not modelled 15.6 32 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein l21-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 78 c3llbA_ not modelled 15.3 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the protein pa3983 with unknown2 function from pseudomonas aeruginosa pao1 79 c3cmqA_ not modelled 15.0 8 PDB header:ligase Chain: A: PDB Molecule:phenylalanyl-trna synthetase, mitochondrial; PDBTitle: crystal structure of human mitochondrial phenylalanine trna2 synthetase 80 c1s1iU_ not modelled 14.5 35 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l26-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 81 c2qj8B_ not modelled 14.5 16 PDB header:hydrolase Chain: B: PDB Molecule:mlr6093 protein; PDBTitle: crystal structure of an aspartoacylase family protein (mlr6093) from2 mesorhizobium loti maff303099 at 2.00 a resolution 82 c1q46A_ not modelled 14.4 9 PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 alpha subunit; PDBTitle: crystal structure of the eif2 alpha subunit from2 saccharomyces cerevisia 83 d2plia1 not modelled 14.4 26 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 84 d2b25a1 not modelled 13.7 35 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:tRNA(1-methyladenosine) methyltransferase-like 85 d2zjrr1 not modelled 13.5 40 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 86 c2hj1A_ not modelled 13.3 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a 3d domain-swapped dimer of protein hi0395 from2 haemophilus influenzae 87 d2hj1a1 not modelled 13.3 8 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:HI0395-like 88 d2oaia1 not modelled 13.2 26 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 89 d1jera_ not modelled 13.1 23 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 90 c1jerA_ not modelled 13.1 23 PDB header:electron transport Chain: A: PDB Molecule:cucumber stellacyanin; PDBTitle: cucumber stellacyanin, cu2+, ph 7.0 91 d1yvca1 not modelled 12.6 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 92 c2khjA_ not modelled 12.6 16 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1 93 c3cpfB_ not modelled 12.4 18 PDB header:cell cycle Chain: B: PDB Molecule:eukaryotic translation initiation factor 5a-1; PDBTitle: crystal structure of human eukaryotic translation initiation factor2 eif5a 94 c1xtdA_ not modelled 12.4 24 PDB header:translation Chain: A: PDB Molecule:eukaryotic initiation factor 5a; PDBTitle: structural analysis of leishmania mexicana eukaryotic initiation2 factor 5a 95 c1t0jA_ not modelled 12.1 14 PDB header:signaling protein Chain: A: PDB Molecule:voltage-gated calcium channel subunit beta2a; PDBTitle: crystal structure of a complex between voltage-gated calcium channel2 beta2a subunit and a peptide of the alpha1c subunit 96 d2f9ha1 not modelled 12.1 17 Fold:PTSIIA/GutA-like Superfamily:PTSIIA/GutA-like Family:PTSIIA/GutA-like 97 d2cbpa_ not modelled 12.0 33 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 98 d1yeza1 not modelled 12.0 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 99 c1khiA_ not modelled 11.8 24 PDB header:structural protein Chain: A: PDB Molecule:hex1; PDBTitle: crystal structure of hex1

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0