Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP33345
DateThu Jan 5 11:51:46 GMT 2012
Unique Job ID2eb665d713b814dd

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2ra8A_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein q64v53_bacfr;
PDBTitle: crystal structure of the q64v53_bacfr protein from bacteroides2 fragilis. northeast structural genomics consortium target bfr43
Confidence and coverage
Confidence: 99.8% Coverage: 6%
70 residues ( 6% of your sequence) have been modelled with 99.8% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MRHFIYQDEKSHKFRAVEQQGNELHISWGKVGTKGQSQIKSFSDAAAAAKAELKLIAEKV
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   .........70.........80.........90.........100.........110.........120
Sequence  KKGYVEQAKDNSLQPSQTVTGSLKVADLSTIIQEQPSFVAETRAPDKNTDAVLPWLAKDI
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Disorder  ??


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   .........130.........140.........150.........160.........170.........180
Sequence  AVVFPPEVVHTTLSHRRFPGVPVQQADKLPQLRRLACSVSQRDNKTATFDFSACSLEWQN
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   .........190.........200.........210.........220.........230.........240
Sequence  TVAQAISQIDGLKTTQLPSPVMAVLTALEMKCTRYKVREDVMDQIVQEGGLEYATDVIIH
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   .........250.........260.........270.........280.........290.........300
Sequence  LQQIDIEWDYANNVIIILPSGIAPSYLEQYSRFEXRLRKHLSLTEESLWQKCAQKLIAAI
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   .........310.........320.........330.........340.........350.........360
Sequence  PHIPEWRQPLIALLLPEKPEIAHEIAQRLLGQKKLPSLEWLKIVATDEHILASLEKYHEP
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   .........370.........380.........390.........400.........410.........420
Sequence  YAIFDDYYCGAIWSATVLQEQGVAALPRFAPYAASDYCADVLRHINHPFALTLLIRVAGQ
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   .........430.........440.........450.........460.........470.........480
Sequence  TKRCHDRMTKAIAAFPHAAMAALTELLGQKEENSWRIMLMTMLISQPALAEQVIPWLSTP
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   .........490.........500.........510.........520.........530.........540
Sequence  AVAVLKSCQQQLTQPSNHASADLLPAVVVSPPWLSKKKKSPIPVLDLAPLGIEPICYLTE
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   .........550.........560.........570.........580.........590.........600
Sequence  EISNQLLAKYIWYSKHITVSHEESTTNLLARMGFQRRIAGTYIKAPEAVVEAWLNEDYST
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   .........610.........620.........630.........640.........650.........660
Sequence  LLSEFKVFHSPTGHYWQLGILTTLPLEKAVKAWNALTLSPHTDTEYSMLHFGLKGLPGLV
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   .........670.........680.........690.........700.........710.........720
Sequence  NSLARYPQEALPITNYFAASELAPAVARAFNKLKTLRENARSWLLKYPEHALTGLLPAAP
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   .........730.........740.........750.........760.........770.........780
Sequence  GKAGEAQDNARAALRMLTENGHQPLLQEIARRYNQPEVTDAVNALLALDPLDNHPTKIPT
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   .........790.........800.........810.........820.........830.........840
Sequence  LPAFYQPSLWTRPVLKANAQSLPDSALLHLGEMLRFPQEEALYPGLLQVKDVCSADSLAG
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   .........850.........860.........870.........880.........890.........900
Sequence  FAWDLFTAWQTAGAPSKESWAFTALGVLGNDDTARKLTPLIRAWPGESQHKRATVGLDIL
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   .........910.........920.........930.........940.........950.........960
Sequence  AAIGSDIALMQLNGIAQKLKFKALQERAKEKIADIAESRELTVAELEDRLAPDLGLDDNG
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  SLLLDFGPRQFTVSFDETLKPFVRDVSGSRLKDLPKPNKSDDETRANDAVNRYKLLKKDA
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   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  RTIAAQQVARLESAMCLRRRWSLENFQLFLVEHPLVRHLTRRLIWGVYSAENQLLACFRV
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   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  AEDNSSSTADDDLFTLPEGDISIGTPHVLEISPTDAAAFGQLFADYELLPPFRQLDRNSY
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   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  ALTEAERNASELTRWAGRKCPSGRVMGLANKGWIKGEPQDGGWIGWMIKPLGRWSLIMEI
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   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  DEGFAVGMSPAELSAEQLLSKLWLWEGKAERYGWGSNSTQEAQFSVIDAITASELINDIE
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   ....
Sequence  ALFE
Secondary structure 

SS confidence 



Disorder 

??
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2ra8 chain A

3D model

Region: 2 - 71
Aligned: 70
Modelled: 70
Confidence: 99.8%
Identity: 50%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein q64v53_bacfr;
PDBTitle: crystal structure of the q64v53_bacfr protein from bacteroides2 fragilis. northeast structural genomics consortium target bfr43

Phyre2

PDB 2eoc chain A

3D model

Region: 24 - 66
Aligned: 43
Modelled: 43
Confidence: 98.2%
Identity: 37%
PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase 3;
PDBTitle: solution structure of the wgr domain from human poly [adp-2 ribose] polymerase-3

Phyre2

PDB 2cr9 chain A domain 1

3D model

Region: 24 - 66
Aligned: 43
Modelled: 43
Confidence: 97.5%
Identity: 28%
Fold: WGR domain-like
Superfamily: WGR domain-like
Family: WGR domain

Phyre2

PDB 3u5g chain B

3D model

Region: 1126 - 1172
Aligned: 47
Modelled: 47
Confidence: 41.6%
Identity: 13%
PDB header:ribosome
Chain: B: PDB Molecule:40s ribosomal protein s1-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution

Phyre2

PDB 1y9q chain A

3D model

Region: 923 - 950
Aligned: 28
Modelled: 27
Confidence: 38.6%
Identity: 11%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae

Phyre2

PDB 2xzm chain 4

3D model

Region: 1126 - 1172
Aligned: 47
Modelled: 47
Confidence: 37.1%
Identity: 13%
PDB header:ribosome
Chain: 4: PDB Molecule:40s ribosomal protein s3a;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1

Phyre2

PDB 2bno chain A

3D model

Region: 921 - 950
Aligned: 30
Modelled: 30
Confidence: 34.9%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:epoxidase;
PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis.

Phyre2

PDB 1yzx chain B

3D model

Region: 892 - 967
Aligned: 76
Modelled: 76
Confidence: 33.7%
Identity: 14%
PDB header:transferase
Chain: B: PDB Molecule:glutathione s-transferase kappa 1;
PDBTitle: crystal structure of human kappa class glutathione2 transferase

Phyre2

PDB 1jjc chain B domain 1

3D model

Region: 938 - 978
Aligned: 38
Modelled: 41
Confidence: 30.5%
Identity: 16%
Fold: Putative DNA-binding domain
Superfamily: Putative DNA-binding domain
Family: Domains B1 and B5 of PheRS-beta, PheT

Phyre2

PDB 2awn chain A domain 1

3D model

Region: 970 - 996
Aligned: 26
Modelled: 27
Confidence: 29.8%
Identity: 15%
Fold: OB-fold
Superfamily: MOP-like
Family: ABC-transporter additional domain

Phyre2

PDB 1te4 chain A

3D model

Region: 861 - 932
Aligned: 67
Modelled: 72
Confidence: 28.7%
Identity: 13%
Fold: alpha-alpha superhelix
Superfamily: ARM repeat
Family: PBS lyase HEAT-like repeat

Phyre2

PDB 2hf3 chain A domain 1

3D model

Region: 957 - 984
Aligned: 28
Modelled: 28
Confidence: 28.6%
Identity: 18%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Actin/HSP70

Phyre2

PDB 3oox chain A

3D model

Region: 921 - 999
Aligned: 73
Modelled: 79
Confidence: 24.1%
Identity: 19%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative 2og-fe(ii) oxygenase family protein;
PDBTitle: crystal structure of a putative 2og-fe(ii) oxygenase family protein2 (cc_0200) from caulobacter crescentus at 1.44 a resolution

Phyre2

PDB 3f6w chain E

3D model

Region: 916 - 950
Aligned: 35
Modelled: 35
Confidence: 23.2%
Identity: 23%
PDB header:dna binding protein
Chain: E: PDB Molecule:xre-family like protein;
PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000

Phyre2

PDB 2o38 chain A

3D model

Region: 923 - 950
Aligned: 28
Modelled: 28
Confidence: 22.7%
Identity: 18%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: putative xre family transcriptional regulator

Phyre2

PDB 2o38 chain A domain 1

3D model

Region: 923 - 950
Aligned: 28
Modelled: 28
Confidence: 22.7%
Identity: 18%
Fold: lambda repressor-like DNA-binding domains
Superfamily: lambda repressor-like DNA-binding domains
Family: NE1354

Phyre2

PDB 3op9 chain A

3D model

Region: 924 - 950
Aligned: 27
Modelled: 27
Confidence: 21.0%
Identity: 15%
PDB header:transcription regulator
Chain: A: PDB Molecule:pli0006 protein;
PDBTitle: crystal structure of transcriptional regulator from listeria innocua

Phyre2

PDB 3gkn chain A

3D model

Region: 953 - 1018
Aligned: 63
Modelled: 66
Confidence: 20.1%
Identity: 14%
PDB header:oxidoreductase
Chain: A: PDB Molecule:bacterioferritin comigratory protein;
PDBTitle: insights into the alkyl peroxide reduction activity of xanthomonas2 campestris bacterioferritin comigratory protein from the trapped3 intermediate/ligand complex structures

Phyre2

PDB 1xvl chain A domain 1

3D model

Region: 1002 - 1063
Aligned: 54
Modelled: 62
Confidence: 19.8%
Identity: 20%
Fold: Chelatase-like
Superfamily: "Helical backbone" metal receptor
Family: TroA-like

Phyre2

PDB 2a6c chain A domain 1

3D model

Region: 923 - 950
Aligned: 28
Modelled: 28
Confidence: 18.5%
Identity: 11%
Fold: lambda repressor-like DNA-binding domains
Superfamily: lambda repressor-like DNA-binding domains
Family: NE1354

Phyre2
1

c2ra8A_
2

c2eocA_
3

d2cr9a1
4

c3u5gB_
5

c1y9qA_
6

c2xzm4_
7

c2bnoA_
8

c1yzxB_
9

d1jjcb1
10

d2awna1
11

d1te4a_
12

d2hf3a1
13

c3ooxA_
14

c3f6wE_
15

c2o38A_
16

d2o38a1
17

c3op9A_
18

c3gknA_
19

d1xvla1
20

d2a6ca1
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2ra8A_



99.8 50 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein q64v53_bacfr;
PDBTitle: crystal structure of the q64v53_bacfr protein from bacteroides2 fragilis. northeast structural genomics consortium target bfr43
2c2eocA_



98.2 37 PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase 3;
PDBTitle: solution structure of the wgr domain from human poly [adp-2 ribose] polymerase-3
3d2cr9a1



97.5 28 Fold:WGR domain-like
Superfamily:WGR domain-like
Family:WGR domain
4c3u5gB_



41.6 13 PDB header:ribosome
Chain: B: PDB Molecule:40s ribosomal protein s1-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution
5c1y9qA_



38.6 11 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae
6c2xzm4_



37.1 13 PDB header:ribosome
Chain: 4: PDB Molecule:40s ribosomal protein s3a;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
7c2bnoA_



34.9 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:epoxidase;
PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis.
8c1yzxB_



33.7 14 PDB header:transferase
Chain: B: PDB Molecule:glutathione s-transferase kappa 1;
PDBTitle: crystal structure of human kappa class glutathione2 transferase
9d1jjcb1



30.5 16 Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Domains B1 and B5 of PheRS-beta, PheT
10d2awna1



29.8 15 Fold:OB-fold
Superfamily:MOP-like
Family:ABC-transporter additional domain
11d1te4a_



28.7 13 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:PBS lyase HEAT-like repeat
12d2hf3a1



28.6 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
13c3ooxA_



24.1 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative 2og-fe(ii) oxygenase family protein;
PDBTitle: crystal structure of a putative 2og-fe(ii) oxygenase family protein2 (cc_0200) from caulobacter crescentus at 1.44 a resolution
14c3f6wE_



23.2 23 PDB header:dna binding protein
Chain: E: PDB Molecule:xre-family like protein;
PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000
15c2o38A_



22.7 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: putative xre family transcriptional regulator
16d2o38a1



22.7 18 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
17c3op9A_



21.0 15 PDB header:transcription regulator
Chain: A: PDB Molecule:pli0006 protein;
PDBTitle: crystal structure of transcriptional regulator from listeria innocua
18c3gknA_



20.1 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:bacterioferritin comigratory protein;
PDBTitle: insights into the alkyl peroxide reduction activity of xanthomonas2 campestris bacterioferritin comigratory protein from the trapped3 intermediate/ligand complex structures
19d1xvla1



19.8 20 Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:TroA-like
20d2a6ca1



18.5 11 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
21d1vb5a_



not modelled 18.1 16 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:IF2B-like
22c3qb0C_



not modelled 17.2 16 PDB header:structural protein
Chain: C: PDB Molecule:actin-related protein 4;
PDBTitle: crystal structure of actin-related protein arp4 from s. cerevisiae2 complexed with atp
23d2phcb1



not modelled 17.2 22 Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:PH0987 C-terminal domain-like
24c3clcC_



not modelled 16.7 19 PDB header:transcription regulator/dna
Chain: C: PDB Molecule:regulatory protein;
PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator
25d1iwga6



not modelled 16.2 17 Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
26d1r69a_



not modelled 16.2 17 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
27d2nrac1



not modelled 16.0 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Replication initiation protein
28c3k1qB_



not modelled 15.8 15 PDB header:virus
Chain: B: PDB Molecule:vp3a, the building block protein of inner shell;
PDBTitle: backbone model of an aquareovirus virion by cryo-electron2 microscopy and bioinformatics
29c3hpbA_



not modelled 15.7 22 PDB header:protein transport
Chain: A: PDB Molecule:snx5 protein;
PDBTitle: crystal structure of snx5-px domain in p212121 space group
30c1o1aP_



not modelled 15.7 20 PDB header:contractile protein
Chain: P: PDB Molecule:skeletal muscle myosin ii;
PDBTitle: molecular models of averaged rigor crossbridges from2 tomograms of insect flight muscle
31d1yt3a2



not modelled 15.6 20 Fold:SAM domain-like
Superfamily:HRDC-like
Family:RNase D C-terminal domains
32d1z67a1



not modelled 15.5 9 Fold:YidB-like
Superfamily:YidB-like
Family:YidB-like
33d1c0fa1



not modelled 14.8 21 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
34c2cseW_



not modelled 14.8 24 PDB header:virus
Chain: W: PDB Molecule:major core protein lambda 1;
PDBTitle: features of reovirus outer-capsid protein mu1 revealed by2 electron and image reconstruction of the virion at 7.0-a3 resolution
35d1vbka2



not modelled 14.7 29 Fold:THUMP domain
Superfamily:THUMP domain-like
Family:THUMP domain
36d2cyya1



not modelled 14.4 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
37d2cg4a1



not modelled 14.2 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
38d1ep5a_



not modelled 13.8 15 Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
39d1y9qa1



not modelled 13.2 11 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Probable transcriptional regulator VC1968, N-terminal domain
40c3f52A_



not modelled 13.1 19 PDB header:transcription activator
Chain: A: PDB Molecule:clp gene regulator (clgr);
PDBTitle: crystal structure of the clp gene regulator clgr from c. glutamicum
41c2zp2B_



not modelled 13.0 22 PDB header:transferase inhibitor
Chain: B: PDB Molecule:kinase a inhibitor;
PDBTitle: c-terminal domain of kipi from bacillus subtilis
42c3mfqB_



not modelled 12.9 9 PDB header:metal binding protein
Chain: B: PDB Molecule:high-affinity zinc uptake system protein znua;
PDBTitle: a glance into the metal binding specificity of troa: where elaborate2 behaviors occur in the active center
43d2croa_



not modelled 12.5 18 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
44c3k1qC_



not modelled 12.5 15 PDB header:virus
Chain: C: PDB Molecule:vp3b, the building block protein of inner shell;
PDBTitle: backbone model of an aquareovirus virion by cryo-electron2 microscopy and bioinformatics
45d2cfxa1



not modelled 12.4 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
46c2dbbA_



not modelled 11.8 21 PDB header:transcriptional regulator
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061;
PDBTitle: crystal structure of ph0061
47c3kblA_



not modelled 11.8 17 PDB header:protein binding
Chain: A: PDB Molecule:female germline-specific tumor suppressor gld-1;
PDBTitle: crystal structure of the gld-1 homodimerization domain from2 caenorhabditis elegans n169a mutant at 2.28 a resolution
48c6rlxC_



not modelled 11.8 56 PDB header:hormone(muscle relaxant)
Chain: C: PDB Molecule:relaxin, a-chain;
PDBTitle: x-ray structure of human relaxin at 1.5 angstroms. comparison to2 insulin and implications for receptor binding determinants
49c6rlxA_



not modelled 11.8 56 PDB header:hormone(muscle relaxant)
Chain: A: PDB Molecule:relaxin, a-chain;
PDBTitle: x-ray structure of human relaxin at 1.5 angstroms. comparison to2 insulin and implications for receptor binding determinants
50d1yaga1



not modelled 11.6 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
51c1vbkA_



not modelled 11.5 29 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1313;
PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3
52d2fxua1



not modelled 11.5 21 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
53d1itwa_



not modelled 11.4 25 Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Monomeric isocitrate dehydrogenase
54d1sq8a_



not modelled 11.3 27 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
55d1i1ga1



not modelled 11.2 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
56c3bjxB_



not modelled 11.1 30 PDB header:hydrolase
Chain: B: PDB Molecule:halocarboxylic acid dehalogenase dehi;
PDBTitle: structure of a group i haloacid dehalogenase from2 pseudomonas putida strain pp3
57c2b0tA_



not modelled 11.1 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadp isocitrate dehydrogenase;
PDBTitle: structure of monomeric nadp isocitrate dehydrogenase
58c4proD_



not modelled 10.9 11 PDB header:serine protease
Chain: D: PDB Molecule:alpha-lytic protease;
PDBTitle: alpha-lytic protease complexed with pro region
59c2xskA_



not modelled 10.9 55 PDB header:chaperone
Chain: A: PDB Molecule:csgc;
PDBTitle: e. coli curli protein csgc - secys
60c2cfxD_



not modelled 10.8 15 PDB header:transcription
Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc;
PDBTitle: structure of b.subtilis lrpc
61c3pppA_



not modelled 10.8 16 PDB header:transport protein
Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein;
PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc
62d1pc6a_



not modelled 10.8 10 Fold:NinB
Superfamily:NinB
Family:NinB
63c3ltjA_



not modelled 10.6 15 PDB header:protein binding
Chain: A: PDB Molecule:alpharep-4;
PDBTitle: structure of a new family of artificial alpha helicoidal repeat2 proteins (alpha-rep) based on thermostable heat-like repeats
64c2rajA_



not modelled 10.1 21 PDB header:structural protein
Chain: A: PDB Molecule:sorting nexin-9;
PDBTitle: so4 bound px-bar membrane remodeling unit of sorting nexin 9
65d1llib_



not modelled 10.1 20 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
66c2phcB_



not modelled 10.0 22 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein ph0987;
PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii
67c1pbyA_



not modelled 9.9 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:quinohemoprotein amine dehydrogenase 60 kda
PDBTitle: structure of the phenylhydrazine adduct of the2 quinohemoprotein amine dehydrogenase from paracoccus3 denitrificans at 1.7 a resolution
68c3eusB_



not modelled 9.9 23 PDB header:dna binding protein
Chain: B: PDB Molecule:dna-binding protein;
PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi
69c2l4aA_



not modelled 9.8 14 PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
70c1i1gA_



not modelled 9.5 17 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lrpa;
PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus
71c2kpjA_



not modelled 9.5 13 PDB header:transcription regulator
Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa;
PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a
72d2fbea1



not modelled 9.3 13 Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:SPRY domain
73d2ofya1



not modelled 9.3 3 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
74c3lisB_



not modelled 9.2 9 PDB header:transcription
Chain: B: PDB Molecule:csp231i c protein;
PDBTitle: crystal structure of the restriction-modification controller protein2 c.csp231i (monoclinic form)
75c3bs3A_



not modelled 9.1 15 PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis
76c3b7hA_



not modelled 9.0 17 PDB header:structural protein
Chain: A: PDB Molecule:prophage lp1 protein 11;
PDBTitle: crystal structure of the prophage lp1 protein 11
77c2e1cA_



not modelled 9.0 24 PDB header:transcription/dna
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519;
PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex
78c2lbaA_



not modelled 8.9 28 PDB header:lipid binding protein
Chain: A: PDB Molecule:babp protein;
PDBTitle: solution structure of chicken ileal babp in complex with2 glycochenodeoxycholic acid
79c2rliA_



not modelled 8.9 7 PDB header:metal transport
Chain: A: PDB Molecule:sco2 protein homolog, mitochondrial;
PDBTitle: solution structure of cu(i) human sco2
80c1ocuA_



not modelled 8.9 18 PDB header:sorting protein
Chain: A: PDB Molecule:sorting nexin;
PDBTitle: crystal structure of the yeast px-domain protein grd19p2 (sorting nexin 3) complexed to3 phosphatidylinosytol-3-phospahte.
81c1jmxA_



not modelled 8.8 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:amine dehydrogenase;
PDBTitle: crystal structure of a quinohemoprotein amine dehydrogenase2 from pseudomonas putida
82d1sbqa_



not modelled 8.8 15 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:Methenyltetrahydrofolate synthetase
83c3d3kD_



not modelled 8.7 23 PDB header:protein binding
Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: crystal structure of human edc3p
84c3o66A_



not modelled 8.7 24 PDB header:transport protein
Chain: A: PDB Molecule:glycine betaine/carnitine/choline abc transporter;
PDBTitle: crystal structure of glycine betaine/carnitine/choline abc transporter
85d1rioa_



not modelled 8.7 14 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
86d1soua_



not modelled 8.6 21 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:Methenyltetrahydrofolate synthetase
87c3bdnB_



not modelled 8.6 15 PDB header:transcription/dna
Chain: B: PDB Molecule:lambda repressor;
PDBTitle: crystal structure of the lambda repressor
88c3d3jA_



not modelled 8.6 21 PDB header:protein binding
Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: crystal structure of human edc3p
89c2ewtA_



not modelled 8.5 16 PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of the dna-binding domain of bldd
90c1f8vE_



not modelled 8.4 40 PDB header:virus/rna
Chain: E: PDB Molecule:mature capsid protein gamma;
PDBTitle: the structure of pariacoto virus reveals a dodecahedral2 cage of duplex rna
91d2hy5a1



not modelled 8.4 22 Fold:DsrEFH-like
Superfamily:DsrEFH-like
Family:DsrEF-like
92d1f1sa2



not modelled 8.3 31 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
93c1wwuA_



not modelled 8.3 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein flj21935;
PDBTitle: solution structure of the sam_pnt domain of human protein2 flj21935
94d1y7ya1



not modelled 8.3 8 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
95c3r0eC_



not modelled 8.3 18 PDB header:sugar binding protein
Chain: C: PDB Molecule:lectin;
PDBTitle: structure of remusatia vivipara lectin
96d3clsd2



not modelled 8.2 26 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:C-terminal domain of the electron transfer flavoprotein alpha subunit
97d1k8ka1



not modelled 8.2 13 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
98d1ixsa_



not modelled 8.1 26 Fold:RuvA C-terminal domain-like
Superfamily:DNA helicase RuvA subunit, C-terminal domain
Family:DNA helicase RuvA subunit, C-terminal domain
99c2p6tH_



not modelled 8.0 24 PDB header:transcription
Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family;
PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0