Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	T	G	I	V	Q	G	T	A	K	L	V	S	I	D	E	K	P	N	F	R	T	H	V	V	E	L	P	D	H	M	L	D	G	L	E	T	G	A	S	V	A	H	N	G	C	C	L	T	V	T	E	I	N	G	N	H	V	S
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	D	L	M	K	E	T	L	R	I	T	N	L	G	D	L	K	V	G	D	W	V	N	V	E	R	A	A	K	F	S	D	E	I	G	G	H	L	M	S	G	H	I	M	T	T	A	E	V	A	K	I	L	T	S	E	N	N	R	Q
Secondary structure
SS confidence
Disorder														?	?		?		?											?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	W	F	K	V	Q	D	S	Q	L	M	K	Y	I	L	Y	K	G	F	I	G	I	D	G	I	S	L	T	V	G	E	V	T	P	T	R	F	C	V	H	L	I	P	E	T	L	E	R	T	T	L	G	K	K	K	L	G	A	R	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Sequence		N	I	E	I	D	P	Q	T	Q	A	V	V	D	T	V	E	R	V	L	A	A	R	E	N	A	M	N	Q	P	G	T	E	A
Secondary structure
SS confidence
Disorder																					?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1i8d chain B Region: 1 - 206 Aligned: 201 Modelled: 201 Confidence: 100.0% Identity: 100% PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase; PDBTitle: crystal structure of riboflavin synthase Phyre2 PDB 1kzl chain A Region: 1 - 202 Aligned: 202 Modelled: 202 Confidence: 100.0% Identity: 35% PDB header:transferase Chain: A: PDB Molecule:riboflavin synthase; PDBTitle: riboflavin synthase from s.pombe bound to2 carboxyethyllumazine Phyre2 PDB 3a35 chain B Region: 1 - 184 Aligned: 182 Modelled: 184 Confidence: 100.0% Identity: 31% PDB header:luminescent protein Chain: B: PDB Molecule:lumazine protein; PDBTitle: crystal structure of lump complexed with riboflavin Phyre2 PDB 3ddy chain A Region: 1 - 184 Aligned: 173 Modelled: 184 Confidence: 100.0% Identity: 32% PDB header:luminescent protein Chain: A: PDB Molecule:lumazine protein; PDBTitle: structure of lumazine protein, an optical transponder of luminescent2 bacteria Phyre2 PDB 1i8d chain A domain 2 Region: 94 - 206 Aligned: 113 Modelled: 113 Confidence: 100.0% Identity: 100% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin synthase domain-like Family: Riboflavin synthase Phyre2 PDB 1kzl chain A domain 2 Region: 93 - 202 Aligned: 110 Modelled: 110 Confidence: 100.0% Identity: 33% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin synthase domain-like Family: Riboflavin synthase Phyre2 PDB 1hze chain B Region: 1 - 97 Aligned: 97 Modelled: 97 Confidence: 100.0% Identity: 100% PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: solution structure of the n-terminal domain of riboflavin synthase2 from e. coli Phyre2 PDB 1i18 chain B Region: 1 - 97 Aligned: 97 Modelled: 97 Confidence: 100.0% Identity: 100% PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: solution structure of the n-terminal domain of riboflavin synthase2 from e. coli Phyre2 PDB 1i8d chain A domain 1 Region: 1 - 93 Aligned: 93 Modelled: 93 Confidence: 100.0% Identity: 100% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin synthase domain-like Family: Riboflavin synthase Phyre2 PDB 1pkv chain A Region: 1 - 87 Aligned: 87 Modelled: 87 Confidence: 100.0% Identity: 100% PDB header:transferase Chain: A: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: the n-terminal domain of riboflavin synthase in complex with2 riboflavin Phyre2 PDB 1pkv chain B Region: 1 - 87 Aligned: 87 Modelled: 87 Confidence: 100.0% Identity: 100% PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: the n-terminal domain of riboflavin synthase in complex with2 riboflavin Phyre2 PDB 1kzl chain A domain 1 Region: 1 - 92 Aligned: 92 Modelled: 92 Confidence: 100.0% Identity: 38% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin synthase domain-like Family: Riboflavin synthase Phyre2 PDB 2g50 chain A domain 1 Region: 19 - 84 Aligned: 58 Modelled: 66 Confidence: 68.8% Identity: 16% Fold: PK beta-barrel domain-like Superfamily: PK beta-barrel domain-like Family: Pyruvate kinase beta-barrel domain Phyre2 PDB 3nrf chain A Region: 42 - 83 Aligned: 39 Modelled: 42 Confidence: 64.0% Identity: 26% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:apag protein; PDBTitle: crystal structure of an apag protein (pa1934) from pseudomonas2 aeruginosa pao1 at 1.50 a resolution Phyre2 PDB 1pkl chain A domain 1 Region: 17 - 84 Aligned: 61 Modelled: 68 Confidence: 48.6% Identity: 11% Fold: PK beta-barrel domain-like Superfamily: PK beta-barrel domain-like Family: Pyruvate kinase beta-barrel domain Phyre2 PDB 1e0t chain A domain 1 Region: 19 - 84 Aligned: 58 Modelled: 66 Confidence: 46.2% Identity: 31% Fold: PK beta-barrel domain-like Superfamily: PK beta-barrel domain-like Family: Pyruvate kinase beta-barrel domain Phyre2 PDB 1liu chain A domain 1 Region: 19 - 84 Aligned: 58 Modelled: 66 Confidence: 43.7% Identity: 22% Fold: PK beta-barrel domain-like Superfamily: PK beta-barrel domain-like Family: Pyruvate kinase beta-barrel domain Phyre2 PDB 1a3x chain A domain 1 Region: 30 - 84 Aligned: 48 Modelled: 55 Confidence: 34.7% Identity: 15% Fold: PK beta-barrel domain-like Superfamily: PK beta-barrel domain-like Family: Pyruvate kinase beta-barrel domain Phyre2 PDB 3o44 chain G Region: 81 - 91 Aligned: 11 Modelled: 11 Confidence: 33.8% Identity: 36% PDB header:toxin Chain: G: PDB Molecule:hemolysin; PDBTitle: crystal structure of the vibrio cholerae cytolysin (hlya) heptameric2 pore Phyre2 PDB 2hx0 chain A domain 1 Region: 34 - 120 Aligned: 86 Modelled: 87 Confidence: 30.6% Identity: 17% Fold: AF0104/ALDC/Ptd012-like Superfamily: AF0104/ALDC/Ptd012-like Family: AF0104-like Phyre2 1 c1i8dB_ 2 c1kzlA_ 3 c3a35B_ 4 c3ddyA_ 5 d1i8da2 6 d1kzla2 7 c1hzeB_ 8 c1i18B_ 9 d1i8da1 10 c1pkvA_ 11 c1pkvB_ 12 d1kzla1 13 d2g50a1 14 c3nrfA_ 15 d1pkla1 16 d1e0ta1 17 d1liua1 18 d1a3xa1 19 c3o44G_ 20 d2hx0a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1i8dB_ 100.0 100 PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase; PDBTitle: crystal structure of riboflavin synthase 2 c1kzlA_ 100.0 35 PDB header:transferase Chain: A: PDB Molecule:riboflavin synthase; PDBTitle: riboflavin synthase from s.pombe bound to2 carboxyethyllumazine 3 c3a35B_ 100.0 31 PDB header:luminescent protein Chain: B: PDB Molecule:lumazine protein; PDBTitle: crystal structure of lump complexed with riboflavin 4 c3ddyA_ 100.0 32 PDB header:luminescent protein Chain: A: PDB Molecule:lumazine protein; PDBTitle: structure of lumazine protein, an optical transponder of luminescent2 bacteria 5 d1i8da2 100.0 100 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Riboflavin synthase 6 d1kzla2 100.0 33 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Riboflavin synthase 7 c1hzeB_ 100.0 100 PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: solution structure of the n-terminal domain of riboflavin synthase2 from e. coli 8 c1i18B_ 100.0 100 PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: solution structure of the n-terminal domain of riboflavin synthase2 from e. coli 9 d1i8da1 100.0 100 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Riboflavin synthase 10 c1pkvA_ 100.0 100 PDB header:transferase Chain: A: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: the n-terminal domain of riboflavin synthase in complex with2 riboflavin 11 c1pkvB_ 100.0 100 PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: the n-terminal domain of riboflavin synthase in complex with2 riboflavin 12 d1kzla1 100.0 38 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Riboflavin synthase 13 d2g50a1 68.8 16 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 14 c3nrfA_ 64.0 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:apag protein; PDBTitle: crystal structure of an apag protein (pa1934) from pseudomonas2 aeruginosa pao1 at 1.50 a resolution 15 d1pkla1 48.6 11 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 16 d1e0ta1 46.2 31 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 17 d1liua1 43.7 22 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 18 d1a3xa1 34.7 15 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 19 c3o44G_ 33.8 36 PDB header:toxin Chain: G: PDB Molecule:hemolysin; PDBTitle: crystal structure of the vibrio cholerae cytolysin (hlya) heptameric2 pore 20 d2hx0a1 30.6 17 Fold:AF0104/ALDC/Ptd012-like Superfamily:AF0104/ALDC/Ptd012-like Family:AF0104-like 21 d1pkma1 not modelled 29.2 20 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 22 c1xezA_ not modelled 28.2 36 PDB header:toxin Chain: A: PDB Molecule:hemolysin; PDBTitle: crystal structure of the vibrio cholerae cytolysin (hlya)2 pro-toxin with octylglucoside bound 23 c1hn0A_ not modelled 27.4 14 PDB header:lyase Chain: A: PDB Molecule:chondroitin abc lyase i; PDBTitle: crystal structure of chondroitin abc lyase i from proteus2 vulgaris at 1.9 angstroms resolution 24 d1zbfa1 not modelled 26.8 10 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 25 d3bzka4 not modelled 25.2 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 26 d1hn0a3 not modelled 23.5 11 Fold:Hyaluronate lyase-like, C-terminal domain Superfamily:Hyaluronate lyase-like, C-terminal domain Family:Hyaluronate lyase-like, C-terminal domain 27 c1v0eB_ not modelled 20.2 26 PDB header:hydrolase Chain: B: PDB Molecule:endo-alpha-sialidase; PDBTitle: endosialidase of bacteriophage k1f 28 d1zrua1 not modelled 17.9 24 Fold:Virus attachment protein globular domain Superfamily:Virus attachment protein globular domain Family:Lactophage receptor-binding protein head domain 29 c2izpB_ not modelled 16.9 25 PDB header:toxin Chain: B: PDB Molecule:putative membrane antigen; PDBTitle: bipd - an invasion prtein associated with the type-iii2 secretion system of burkholderia pseudomallei. 30 d2izpa1 not modelled 15.4 25 Fold:IpaD-like Superfamily:IpaD-like Family:IpaD-like 31 d1vqoq1 not modelled 15.2 24 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 32 c3da0C_ not modelled 13.8 24 PDB header:viral protein Chain: C: PDB Molecule:cleaved chimeric receptor binding protein from PDBTitle: crystal structure of a cleaved form of a chimeric receptor binding2 protein from lactococcal phages subspecies tp901-1 and p2 33 c2khiA_ not modelled 13.7 10 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 4 of the e. coli ribosomal2 protein s1 34 c3h43F_ not modelled 13.2 20 PDB header:hydrolase Chain: F: PDB Molecule:proteasome-activating nucleotidase; PDBTitle: n-terminal domain of the proteasome-activating nucleotidase2 of methanocaldococcus jannaschii 35 c2zkrq_ not modelled 12.8 29 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule:rna expansion segment es31 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 36 d1qfja1 not modelled 12.8 7 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 37 d1xpna_ not modelled 12.7 25 Fold:Prealbumin-like Superfamily:Hypothetical protein PA1324 Family:Hypothetical protein PA1324 38 c2jz2A_ not modelled 12.4 44 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ssl0352 protein; PDBTitle: solution nmr structure of ssl0352 protein from synechocystis sp. pcc2 6803. northeast structural genomics consortium target sgr42 39 d1xsza2 not modelled 11.9 25 Fold:TBP-like Superfamily:RalF, C-terminal domain Family:RalF, C-terminal domain 40 d1yq2a3 not modelled 11.6 21 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 41 c3kf8D_ not modelled 11.4 27 PDB header:structural protein Chain: D: PDB Molecule:protein ten1; PDBTitle: crystal structure of c. tropicalis stn1-ten1 complex 42 c1s1iQ_ not modelled 11.2 35 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein l21-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 43 c2dycA_ not modelled 11.1 20 PDB header:sugar binding protein Chain: A: PDB Molecule:galectin-4; PDBTitle: crystal structure of the n-terminal domain of mouse galectin-4 44 d1ulea_ not modelled 10.9 12 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Galectin (animal S-lectin) 45 d2f0ca1 not modelled 10.6 20 Fold:Virus attachment protein globular domain Superfamily:Virus attachment protein globular domain Family:Lactophage receptor-binding protein head domain 46 c3d8mA_ not modelled 10.4 24 PDB header:virus/viral protein Chain: A: PDB Molecule:baseplate protein, receptor binding protein; PDBTitle: crystal structure of a chimeric receptor binding protein from2 lactococcal phages subspecies tp901-1 and p2 47 d1s04a_ not modelled 10.2 22 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 48 c3iz5U_ not modelled 9.4 29 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 49 d1r9fa_ not modelled 9.4 36 Fold:Tombusvirus P19 core protein, VP19 Superfamily:Tombusvirus P19 core protein, VP19 Family:Tombusvirus P19 core protein, VP19 50 c2p6yA_ not modelled 9.3 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein vca0587; PDBTitle: x-ray structure of the protein q9km02_vibch from vibrio cholerae at2 the resolution 1.63 a. northeast structural genomics consortium3 target vcr80. 51 c2r7fA_ not modelled 9.3 5 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease ii family protein; PDBTitle: crystal structure of ribonuclease ii family protein from deinococcus2 radiodurans, hexagonal crystal form. northeast structural genomics3 target drr63 52 c3izcU_ not modelled 9.2 35 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein rpl21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 53 c4a1aP_ not modelled 9.0 35 PDB header:ribosome Chain: P: PDB Molecule:60s ribosomal protein l21; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 54 d1cb8a2 not modelled 8.8 13 Fold:Hyaluronate lyase-like, C-terminal domain Superfamily:Hyaluronate lyase-like, C-terminal domain Family:Hyaluronate lyase-like, C-terminal domain 55 d1fnda1 not modelled 8.7 17 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 56 c2wg6L_ not modelled 8.1 22 PDB header:transcription,hydrolase Chain: L: PDB Molecule:general control protein gcn4, PDBTitle: proteasome-activating nucleotidase (pan) n-domain (57-134)2 from archaeoglobus fulgidus fused to gcn4, p61a mutant 57 c3htnA_ not modelled 7.9 17 PDB header:metal binding protein Chain: A: PDB Molecule:putative dna binding protein; PDBTitle: crystal structure of a putative dna binding protein (bt_1116) from2 bacteroides thetaiotaomicron vpi-5482 at 1.50 a resolution 58 d1krha1 not modelled 7.8 16 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 59 c2z14A_ not modelled 7.7 13 PDB header:signaling protein Chain: A: PDB Molecule:ef-hand domain-containing family member c2; PDBTitle: crystal structure of the n-terminal duf1126 in human ef-2 hand domain containing 2 protein 60 d1gawa1 not modelled 7.6 17 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 61 c3ca9A_ not modelled 7.5 21 PDB header:hydrolase Chain: A: PDB Molecule:deoxyuridine triphosphatase; PDBTitle: evolution of chlorella virus dutpase 62 d2plia1 not modelled 7.5 21 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 63 d2c9aa2 not modelled 7.4 23 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:MAM domain 64 d2oaia1 not modelled 7.0 13 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 65 d1pk6a_ not modelled 6.9 17 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 66 c1aqfB_ not modelled 6.9 17 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: pyruvate kinase from rabbit muscle with mg, k, and l-2 phospholactate 67 d2p13a1 not modelled 6.7 14 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 68 c3ftjA_ not modelled 6.7 11 PDB header:hydrolase Chain: A: PDB Molecule:macrolide export atp-binding/permease protein PDBTitle: crystal structure of the periplasmic region of macb from2 actinobacillus actinomycetemcomitans 69 c3m9bK_ not modelled 6.7 25 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 70 d1k8kg_ not modelled 6.5 14 Fold:alpha-alpha superhelix Superfamily:Arp2/3 complex 16 kDa subunit ARPC5 Family:Arp2/3 complex 16 kDa subunit ARPC5 71 d1fdra1 not modelled 6.4 16 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 72 c1t5aB_ not modelled 6.3 17 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase, m2 isozyme; PDBTitle: human pyruvate kinase m2 73 c2khjA_ not modelled 6.3 13 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1 74 d1j8hd1 not modelled 6.0 27 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 75 d2plsa1 not modelled 6.0 17 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 76 c2k4vA_ not modelled 5.9 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pa1076; PDBTitle: solution structure of uncharacterized protein pa1076 from2 pseudomonas aeruginosa. northeast structural genomics3 consortium (nesg) target pat3, ontario center for4 structural proteomics target pa1076 . 77 d1duna_ not modelled 5.8 13 Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like 78 c2l0dA_ not modelled 5.8 12 PDB header:cell adhesion Chain: A: PDB Molecule:cell surface protein; PDBTitle: solution nmr structure of putative cell surface protein ma_4588 (272-2 376 domain) from methanosarcina acetivorans, northeast structural3 genomics consortium target mvr254a 79 d1qfza1 not modelled 5.6 17 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 80 c3lgjA_ not modelled 5.4 20 PDB header:dna binding protein Chain: A: PDB Molecule:single-stranded dna-binding protein; PDBTitle: crystal structure of single-stranded binding protein (ssb) from2 bartonella henselae 81 c2zzfA_ not modelled 5.3 18 PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of alanyl-trna synthetase without2 oligomerization domain 82 c2aklA_ not modelled 5.3 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa 83 d3deda1 not modelled 5.1 17 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 84 d1am2a_ not modelled 5.0 19 Fold:Hedgehog/intein (Hint) domain Superfamily:Hedgehog/intein (Hint) domain Family:Intein (protein splicing domain) 85 c2vl6C_ not modelled 5.0 27 PDB header:dna binding protein Chain: C: PDB Molecule:minichromosome maintenance protein mcm; PDBTitle: structural analysis of the sulfolobus solfataricus mcm2 protein n-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0