Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP77395
DateThu Jan 5 12:28:31 GMT 2012
Unique Job ID2ccd73a1b03d5dbb

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3qdnA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative thioredoxin protein;
PDBTitle: putative thioredoxin protein from salmonella typhimurium
Confidence and coverage
Confidence:100.0% Coverage:100%
283 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAK
Secondary structure 




















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Disorder  ??????














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   .........70.........80.........90.........100.........110.........120
Sequence  LDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDKVLPREEELKAQQ
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??????






















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   .........130.........140.........150.........160.........170.........180
Sequence  AMQLMQESNYTDALPLLKDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLKTIPLQDQD
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Disorder 




????











??
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???
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   .........190.........200.........210.........220.........230.........240
Sequence  TRYQGLVAQIELLKQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF
Secondary structure 












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??????







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??








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   .........250.........260.........270.........280....
Sequence  GHLRKDLTAADGQTRKTFQEILAALGTGDALASKYRRQLYALLY
Secondary structure 













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Disorder 






????





























???
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3qdn chain A

3D model

Region: 2 - 284
Aligned: 283
Modelled: 283
Confidence: 100.0%
Identity: 93%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative thioredoxin protein;
PDBTitle: putative thioredoxin protein from salmonella typhimurium

Phyre2

PDB 2ppt chain A

3D model

Region: 3 - 110
Aligned: 106
Modelled: 108
Confidence: 99.9%
Identity: 25%
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin-2;
PDBTitle: crystal structure of thioredoxin-2

Phyre2

PDB 2r5s chain B

3D model

Region: 115 - 284
Aligned: 170
Modelled: 170
Confidence: 99.9%
Identity: 45%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein vp0806;
PDBTitle: the crystal structure of a domain of protein vp0806 (unknown function)2 from vibrio parahaemolyticus rimd 2210633

Phyre2

PDB 3dxb chain E

3D model

Region: 5 - 114
Aligned: 109
Modelled: 110
Confidence: 99.9%
Identity: 28%
PDB header:splicing, transcription
Chain: E: PDB Molecule:thioredoxin n-terminally fused to puf60(uhm);
PDBTitle: structure of the uhm domain of puf60 fused to thioredoxin

Phyre2

PDB 3p2a chain B

3D model

Region: 1 - 113
Aligned: 111
Modelled: 113
Confidence: 99.9%
Identity: 27%
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative thioredoxin-like protein;
PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis

Phyre2

PDB 3p2a chain A

3D model

Region: 4 - 114
Aligned: 109
Modelled: 111
Confidence: 99.9%
Identity: 28%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative thioredoxin-like protein;
PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis

Phyre2

PDB 3hz4 chain A

3D model

Region: 3 - 115
Aligned: 112
Modelled: 113
Confidence: 99.9%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin from methanosarcina mazei

Phyre2

PDB 3f8u chain A

3D model

Region: 4 - 112
Aligned: 109
Modelled: 109
Confidence: 99.9%
Identity: 23%
PDB header:immune system/isomerase
Chain: A: PDB Molecule:protein disulfide-isomerase a3erp57;
PDBTitle: tapasin/erp57 heterodimer

Phyre2

PDB 2i1u chain A

3D model

Region: 4 - 112
Aligned: 108
Modelled: 109
Confidence: 99.9%
Identity: 30%
PDB header:electron transport
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: mycobacterium tuberculosis thioredoxin c

Phyre2

PDB 2diy chain A

3D model

Region: 2 - 117
Aligned: 114
Modelled: 116
Confidence: 99.9%
Identity: 16%
PDB header:protein binding
Chain: A: PDB Molecule:thioredoxin-like protein 2;
PDBTitle: the solution structure of the thioredoxin domain of human2 thioredoxin-like protein 2

Phyre2

PDB 2l5l chain A

3D model

Region: 2 - 114
Aligned: 113
Modelled: 113
Confidence: 99.9%
Identity: 24%
PDB header:transport protein
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: solution structure of thioredoxin from bacteroides vulgatus

Phyre2

PDB 2i4a chain A

3D model

Region: 4 - 109
Aligned: 105
Modelled: 106
Confidence: 99.9%
Identity: 24%
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin from the acidophile2 acetobacter aceti

Phyre2

PDB 1f9m chain A

3D model

Region: 2 - 109
Aligned: 107
Modelled: 108
Confidence: 99.9%
Identity: 17%
Fold: Thioredoxin fold
Superfamily: Thioredoxin-like
Family: Thioltransferase

Phyre2

PDB 3gnj chain D

3D model

Region: 2 - 112
Aligned: 110
Modelled: 111
Confidence: 99.9%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:thioredoxin domain protein;
PDBTitle: the crystal structure of a thioredoxin-related protein from2 desulfitobacterium hafniense dcb

Phyre2

PDB 1dby chain A

3D model

Region: 5 - 110
Aligned: 105
Modelled: 106
Confidence: 99.9%
Identity: 27%
Fold: Thioredoxin fold
Superfamily: Thioredoxin-like
Family: Thioltransferase

Phyre2

PDB 2alb chain A

3D model

Region: 4 - 110
Aligned: 107
Modelled: 107
Confidence: 99.9%
Identity: 24%
PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide-isomerase a3;
PDBTitle: nmr structure of the n-terminal domain a of the2 glycoprotein chaperone erp57

Phyre2

PDB 2dj0 chain A

3D model

Region: 2 - 106
Aligned: 105
Modelled: 105
Confidence: 99.9%
Identity: 20%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:thioredoxin-related transmembrane protein 2;
PDBTitle: the solution structure of the thioredoxin domain of human2 thioredoxin-related transmembrane protein 2

Phyre2

PDB 3ed3 chain A

3D model

Region: 2 - 112
Aligned: 110
Modelled: 111
Confidence: 99.9%
Identity: 15%
PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide-isomerase mpd1;
PDBTitle: crystal structure of the yeast dithiol/disulfide2 oxidoreductase mpd1p

Phyre2

PDB 1thx chain A

3D model

Region: 4 - 110
Aligned: 106
Modelled: 107
Confidence: 99.9%
Identity: 21%
Fold: Thioredoxin fold
Superfamily: Thioredoxin-like
Family: Thioltransferase

Phyre2

PDB 1xwa chain A

3D model

Region: 1 - 110
Aligned: 109
Modelled: 110
Confidence: 99.9%
Identity: 19%
Fold: Thioredoxin fold
Superfamily: Thioredoxin-like
Family: Thioltransferase

Phyre2
1

c3qdnA_
2

c2pptA_
3

c2r5sB_
4

c3dxbE_
5

c3p2aB_
6

c3p2aA_
7

c3hz4A_
8

c3f8uA_
9

c2i1uA_
10

c2diyA_
11

c2l5lA_
12

c2i4aA_
13

d1f9ma_
14

c3gnjD_
15

d1dbya_
16

c2albA_
17

c2dj0A_
18

c3ed3A_
19

d1thxa_
20

d1xwaa_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3qdnA_



100.0 93 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative thioredoxin protein;
PDBTitle: putative thioredoxin protein from salmonella typhimurium
2c2pptA_



99.9 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin-2;
PDBTitle: crystal structure of thioredoxin-2
3c2r5sB_



99.9 45 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein vp0806;
PDBTitle: the crystal structure of a domain of protein vp0806 (unknown function)2 from vibrio parahaemolyticus rimd 2210633
4c3dxbE_



99.9 28 PDB header:splicing, transcription
Chain: E: PDB Molecule:thioredoxin n-terminally fused to puf60(uhm);
PDBTitle: structure of the uhm domain of puf60 fused to thioredoxin
5c3p2aB_



99.9 27 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative thioredoxin-like protein;
PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis
6c3p2aA_



99.9 28 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative thioredoxin-like protein;
PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis
7c3hz4A_



99.9 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin from methanosarcina mazei
8c3f8uA_



99.9 23 PDB header:immune system/isomerase
Chain: A: PDB Molecule:protein disulfide-isomerase a3erp57;
PDBTitle: tapasin/erp57 heterodimer
9c2i1uA_



99.9 30 PDB header:electron transport
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: mycobacterium tuberculosis thioredoxin c
10c2diyA_



99.9 16 PDB header:protein binding
Chain: A: PDB Molecule:thioredoxin-like protein 2;
PDBTitle: the solution structure of the thioredoxin domain of human2 thioredoxin-like protein 2
11c2l5lA_



99.9 24 PDB header:transport protein
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: solution structure of thioredoxin from bacteroides vulgatus
12c2i4aA_



99.9 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin from the acidophile2 acetobacter aceti
13d1f9ma_



99.9 17 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
14c3gnjD_



99.9 19 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:thioredoxin domain protein;
PDBTitle: the crystal structure of a thioredoxin-related protein from2 desulfitobacterium hafniense dcb
15d1dbya_



99.9 27 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
16c2albA_



99.9 24 PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide-isomerase a3;
PDBTitle: nmr structure of the n-terminal domain a of the2 glycoprotein chaperone erp57
17c2dj0A_



99.9 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:thioredoxin-related transmembrane protein 2;
PDBTitle: the solution structure of the thioredoxin domain of human2 thioredoxin-related transmembrane protein 2
18c3ed3A_



99.9 15 PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide-isomerase mpd1;
PDBTitle: crystal structure of the yeast dithiol/disulfide2 oxidoreductase mpd1p
19d1thxa_



99.9 21 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
20d1xwaa_



99.9 19 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
21c2wz9A_



not modelled 99.9 16 PDB header:protein binding
Chain: A: PDB Molecule:glutaredoxin-3;
PDBTitle: crystal structure of the thioredoxin domain of human txnl2
22d2trxa_



not modelled 99.9 28 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
23d1ep7a_



not modelled 99.9 24 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
24c3hypB_



not modelled 99.9 23 PDB header:electron transport
Chain: B: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of bacteroides fragilis trxp_s105g mutant
25c2vlvA_



not modelled 99.9 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin h isoform 2.;
PDBTitle: crystal structure of barley thioredoxin h isoform 2 in2 partially radiation-reduced state
26c3tcoA_



not modelled 99.9 30 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin (trxa-1);
PDBTitle: crystallographic and spectroscopic characterization of sulfolobus2 solfataricus trxa1 provide insights into the determinants of3 thioredoxin fold stability
27c2vocA_



not modelled 99.9 26 PDB header:electron transport
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: thioredoxin a active site mutants form mixed disulfide2 dimers that resemble enzyme-substrate reaction3 intermediate
28c1w89E_



not modelled 99.9 32 PDB header:electron transport
Chain: E: PDB Molecule:thioredoxin;
PDBTitle: structure of the reduced form of human thioredoxin 2
29c1t00A_



not modelled 99.9 28 PDB header:electron transport
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: the structure of thioredoxin from s. coelicolor
30c2xbqB_



not modelled 99.9 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of reduced schistosoma mansoni2 thioredoxin pre-protein at 1.7 angstrom
31c2o7kA_



not modelled 99.9 36 PDB header:electron transport
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: s. aureus thioredoxin
32d1xfla_



not modelled 99.9 19 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
33c2l6dA_



not modelled 99.9 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: solution structure of desulfothioredoxin from desulfovibrio vulgaris2 hildenborough in its reduced form
34c3apsA_



not modelled 99.9 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:dnaj homolog subfamily c member 10;
PDBTitle: crystal structure of trx4 domain of erdj5
35d1fb6a_



not modelled 99.9 30 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
36c2vimA_



not modelled 99.9 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: x-ray structure of fasciola hepatica thioredoxin
37c1x5dA_



not modelled 99.9 20 PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide-isomerase a6;
PDBTitle: the solution structure of the second thioredoxin-like2 domain of human protein disulfide-isomerase a6
38c1xbsA_



not modelled 99.9 18 PDB header:transcription, cell cycle
Chain: A: PDB Molecule:dim1-like protein;
PDBTitle: crystal structure of human dim2: a dim1-like protein
39c2r2jA_



not modelled 99.9 23 PDB header:chaperone
Chain: A: PDB Molecule:thioredoxin domain-containing protein 4;
PDBTitle: crystal structure of human erp44
40d1ti3a_



not modelled 99.9 18 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
41d1qgva_



not modelled 99.9 14 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:spliceosomal protein U5-15Kd
42d1gh2a_



not modelled 99.9 22 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
43d1m7ta_



not modelled 99.9 27 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
44c2b5eA_



not modelled 99.9 21 PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide-isomerase;
PDBTitle: crystal structure of yeast protein disulfide isomerase
45c1a8yA_



not modelled 99.9 20 PDB header:calcium-binding protein
Chain: A: PDB Molecule:calsequestrin;
PDBTitle: crystal structure of calsequestrin from rabbit skeletal muscle2 sarcoplasmic reticulum at 2.4 a resolution
46c1sjiA_



not modelled 99.9 16 PDB header:metal binding protein
Chain: A: PDB Molecule:calsequestrin, cardiac muscle isoform;
PDBTitle: comparing skeletal and cardiac calsequestrin structures and2 their calcium binding: a proposed mechanism for coupled3 calcium binding and protein polymerization
47c2dmlA_



not modelled 99.9 23 PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide-isomerase a6;
PDBTitle: the solution structure of the first thioredoxin domain of2 mouse protein disulfide-isomerase a6
48c2dizA_



not modelled 99.9 23 PDB header:electron transport
Chain: A: PDB Molecule:thioredoxin domain-containing protein 5;
PDBTitle: the solution structure of the third thioredoxin domain of2 human thioredoxin domain-containing protein 5
49c3d22A_



not modelled 99.9 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin h-type;
PDBTitle: crystal structure of a poplar thioredoxin h mutant,2 pttrxh4c61s
50c2e0qA_



not modelled 99.9 35 PDB header:electron transport
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of k53e thioredoxin from sulfolobus2 tokodaii strain7
51c2vm2C_



not modelled 99.9 20 PDB header:oxidoreductase
Chain: C: PDB Molecule:thioredoxin h isoform 1.;
PDBTitle: crystal structure of barley thioredoxin h isoform 12 crystallized using peg as precipitant
52c2vafA_



not modelled 99.9 20 PDB header:metal-binding protein
Chain: A: PDB Molecule:calsequestrin-2;
PDBTitle: crystal structure of human cardiac calsequestrin
53c2yzuA_



not modelled 99.9 37 PDB header:electron transport
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of oxidized thioredoxin from thermus thermophilus2 hb8
54d1nw2a_



not modelled 99.9 35 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
55d2ifqa1



not modelled 99.8 25 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
56c2qc7A_



not modelled 99.8 16 PDB header:chaperone
Chain: A: PDB Molecule:endoplasmic reticulum protein erp29;
PDBTitle: crystal structure of the protein-disulfide isomerase related chaperone2 erp29
57d1syra_



not modelled 99.8 22 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
58c3emxB_



not modelled 99.8 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin from aeropyrum pernix
59c3apoA_



not modelled 99.8 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:dnaj homolog subfamily c member 10;
PDBTitle: crystal structure of full-length erdj5
60c2l57A_



not modelled 99.8 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of an uncharacterized thioredoin-like protein from2 clostridium perfringens
61d1r26a_



not modelled 99.8 15 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
62c2oe0B_



not modelled 99.8 21 PDB header:electron transport
Chain: B: PDB Molecule:thioredoxin-3;
PDBTitle: crystal structure of mitochondrial thioredoxin 3 from2 saccharomyces cerevisiae
63c2qsiB_



not modelled 99.8 20 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative hydrogenase expression/formation protein hupg;
PDBTitle: crystal structure of putative hydrogenase expression/formation protein2 hupg from rhodopseudomonas palustris cga009
64c1x5eA_



not modelled 99.8 23 PDB header:electron transport
Chain: A: PDB Molecule:thioredoxin domain containing protein 1;
PDBTitle: the solution structure of the thioredoxin-like domain of2 human thioredoxin-related transmembrane protein
65d2b5ea4



not modelled 99.8 21 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:PDI-like
66c3h79A_



not modelled 99.8 10 PDB header:unknown function
Chain: A: PDB Molecule:thioredoxin-like protein;
PDBTitle: crystal structure of trypanosoma cruzi thioredoxin-like hypothetical2 protein q4dv70
67d1j08a2



not modelled 99.8 16 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:PDI-like
68c2i9hA_



not modelled 99.8 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin i;
PDBTitle: nmr solution structure of the reduced form of thioredoxin 12 from yeast (trx1)
69d1oaza_



not modelled 99.8 24 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
70c2dj1A_



not modelled 99.8 26 PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide-isomerase a4;
PDBTitle: the solution structure of the first thioredoxin domain of2 mouse protein disulfide-isomerase a4
71c3ul3A_



not modelled 99.8 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: structural insights into thioredoxin-2: a component of malaria2 parasite protein secretion machinery
72c2j23A_



not modelled 99.8 26 PDB header:immune protein
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: cross-reactivity and crystal structure of malassezia2 sympodialis thioredoxin (mala s 13), a member of a new pan-3 allergen family
73d1a8la2



not modelled 99.8 19 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:PDI-like
74d1a8ya1



not modelled 99.8 17 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Calsequestrin
75c1v98A_



not modelled 99.8 30 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure analysis of thioredoxin from thermus thermophilus
76c3cxgA_



not modelled 99.8 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative thioredoxin;
PDBTitle: crystal structure of plasmodium falciparum thioredoxin, pfi0790w
77c2f51B_



not modelled 99.8 25 PDB header:electron transport
Chain: B: PDB Molecule:thioredoxin;
PDBTitle: structure of trichomonas vaginalis thioredoxin
78c2dj2A_



not modelled 99.8 22 PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide-isomerase a4;
PDBTitle: the solution structure of the second thioredoxin domain of2 mouse protein disulfide-isomerase a4
79c3idvA_



not modelled 99.8 24 PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide-isomerase a4;
PDBTitle: crystal structure of the a0a fragment of erp72
80d1zmaa1



not modelled 99.8 11 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
81c2dbcA_



not modelled 99.8 19 PDB header:signaling protein
Chain: A: PDB Molecule:unnamed protein product;
PDBTitle: solution structure of the thioredoxin-like domain of2 phosducin-like protein 2(pdcl2)
82c3apqB_



not modelled 99.8 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:dnaj homolog subfamily c member 10;
PDBTitle: crystal structure of j-trx1 fragment of erdj5
83c1ovnA_



not modelled 99.8 9 PDB header:chaperone
Chain: A: PDB Molecule:windbeutel;
PDBTitle: crystal structure and functional analysis of drosophila2 wind-- a pdi-related protein
84d1meka_



not modelled 99.8 27 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:PDI-like
85c3d6iB_



not modelled 99.8 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:monothiol glutaredoxin-3;
PDBTitle: structure of the thioredoxin-like domain of yeast2 glutaredoxin 3
86c2dj3A_



not modelled 99.8 25 PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide-isomerase a4;
PDBTitle: the solution structure of the third thioredoxin domain of2 mouse protein disulfide-isomerase a4
87d2hfda1



not modelled 99.8 19 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:HyaE-like
88c1x5cA_



not modelled 99.8 17 PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide-isomerase;
PDBTitle: the solution structure of the second thioredoxin-like2 domain of human protein disulfide-isomerase
89d1g7ea_



not modelled 99.8 15 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:ERP29 N domain-like
90d1v9wa_



not modelled 99.7 10 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Txnl5-like
91d1woua_



not modelled 99.7 15 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Txnl5-like
92d2b5ea1



not modelled 99.7 15 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:PDI-like
93c3pe3D_



not modelled 99.7 14 PDB header:transferase
Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n-
PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate
94d1fo5a_



not modelled 99.7 20 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
95c1b9xC_



not modelled 99.7 16 PDB header:signaling protein
Chain: C: PDB Molecule:protein (phosducin);
PDBTitle: structural analysis of phosducin and its phosphorylation-2 regulated interaction with transducin
96d2c0ga2



not modelled 99.7 10 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:ERP29 N domain-like
97d1a8la1



not modelled 99.7 16 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:PDI-like
98c2dmmA_



not modelled 99.7 17 PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide-isomerase a3;
PDBTitle: the solution structure of the second thioredoxin domain of2 human protein disulfide-isomerase a3
99c3g9bA_



not modelled 99.7 12 PDB header:transferase
Chain: A: PDB Molecule:dolichyl-diphosphooligosaccharide-protein
PDBTitle: crystal structure of reduced ost6l
100d2fwha1



not modelled 99.7 16 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
101d2djja1



not modelled 99.7 21 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:PDI-like
102d1j08a1



not modelled 99.7 16 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:PDI-like
103c3uemA_



not modelled 99.7 19 PDB header:chaperone
Chain: A: PDB Molecule:protein disulfide-isomerase;
PDBTitle: crystal structure of human pdi bb'a' domains
104d2trcp_



not modelled 99.7 17 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Phosducin
105c1j08A_



not modelled 99.7 16 PDB header:isomerase
Chain: A: PDB Molecule:glutaredoxin-like protein;
PDBTitle: crystal structure of glutaredoxin-like protein from2 pyrococcus horikoshii
106c2fgxA_



not modelled 99.7 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thioredoxin;
PDBTitle: solution nmr structure of protein ne2328 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net3.
107c2kucA_



not modelled 99.7 16 PDB header:isomerase
Chain: A: PDB Molecule:putative disulphide-isomerase;
PDBTitle: solution structure of a putative disulphide-isomerase from bacteroides2 thetaiotaomicron
108d1a0rp_



not modelled 99.7 17 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Phosducin
109c1zypB_



not modelled 99.6 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:alkyl hydroperoxide reductase subunit f;
PDBTitle: synchrotron reduced form of the n-terminal domain of2 salmonella typhimurium ahpf
110c3kp8A_



not modelled 99.6 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein;
PDBTitle: the thioredoxin-like domain of a vkor homolog from2 synechococcus sp.
111c3dmlA_



not modelled 99.6 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the periplasmic thioredoxin soxs from2 paracoccus pantotrophus (reduced form)
112d1nhoa_



not modelled 99.6 16 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
113c2hlsB_



not modelled 99.6 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:protein disulfide oxidoreductase;
PDBTitle: the crystal structure of a protein disulfide oxidoreductase from2 aeropyrum pernix k1
114d1hyua4



not modelled 99.6 18 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:PDI-like
115c2aytB_



not modelled 99.5 10 PDB header:oxidoreductase
Chain: B: PDB Molecule:glutaredoxin-like protein;
PDBTitle: the crystal structure of a protein disulfide oxidoreductase from2 aquifex aeolicus
116c2hyxA_



not modelled 99.5 17 PDB header:unknown function
Chain: A: PDB Molecule:protein dipz;
PDBTitle: structure of the c-terminal domain of dipz from mycobacterium2 tuberculosis
117c3f9uA_



not modelled 99.5 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative exported cytochrome c biogenesis-related protein;
PDBTitle: crystal structure of c-terminal domain of putative exported cytochrome2 c biogenesis-related protein from bacteroides fragilis
118d1z5ye1



not modelled 99.5 19 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
119c3fk8A_



not modelled 99.4 20 PDB header:isomerase
Chain: A: PDB Molecule:disulphide isomerase;
PDBTitle: the crystal structure of disulphide isomerase from xylella fastidiosa2 temecula1
120c1fchB_



not modelled 99.4 19 PDB header:signaling protein
Chain: B: PDB Molecule:peroxisomal targeting signal 1 receptor;
PDBTitle: crystal structure of the pts1 complexed to the tpr region2 of human pex5

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0