Phyre 2 Results for P77395

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P77395
Date | Thu Jan 5 12:28:31 GMT 2012
Unique Job ID | 2ccd73a1b03d5dbb

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3qdnA_
Top template information
PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin protein; PDBTitle: putative thioredoxin protein from salmonella typhimurium
Confidence and coverage
Confidence: | 100.0% | Coverage: | 100%
283 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | S | V | E | N | I | V | N | I | N | E | S | N | L | Q | Q | V | L | E | Q | S | M | T | T | P | V | L | F | Y | F | W | S | E | R | S | Q | H | C | L | Q | L | T | P | I | L | E | S | L | A | A | Q | Y | N | G | Q | F | I | L | A | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | L | D | C | D | A | E | Q | M | I | A | A | Q | F | G | L | R | A | I | P | T | V | Y | L | F | Q | N | G | Q | P | V | D | G | F | Q | G | P | Q | P | E | E | A | I | R | A | L | L | D | K | V | L | P | R | E | E | E | L | K | A | Q | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | A | M | Q | L | M | Q | E | S | N | Y | T | D | A | L | P | L | L | K | D | A | W | Q | L | S | N | Q | N | G | E | I | G | L | L | L | A | E | T | L | I | A | L | N | R | S | E | D | A | E | A | V | L | K | T | I | P | L | Q | D | Q | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | T | R | Y | Q | G | L | V | A | Q | I | E | L | L | K | Q | A | A | D | T | P | E | I | Q | Q | L | Q | Q | Q | V | A | E | N | P | E | D | A | A | L | A | T | Q | L | A | L | Q | L | H | Q | V | G | R | N | E | E | A | L | E | L | L | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | .
Sequence |  | G | H | L | R | K | D | L | T | A | A | D | G | Q | T | R | K | T | F | Q | E | I | L | A | A | L | G | T | G | D | A | L | A | S | K | Y | R | R | Q | L | Y | A | L | L | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3qdnA_ |

### PDB 3qdn chain A

Region: 2 - 284
Aligned: 283
Modelled: 283
Confidence: 100.0%
Identity: 93%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative thioredoxin protein;
PDBTitle: putative thioredoxin protein from salmonella typhimurium

Phyre2
2 |
| c2pptA_ |

### PDB 2ppt chain A

Region: 3 - 110
Aligned: 106
Modelled: 108
Confidence: 99.9%
Identity: 25%
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin-2;
PDBTitle: crystal structure of thioredoxin-2

Phyre2
3 |
| c2r5sB_ |

### PDB 2r5s chain B

Region: 115 - 284
Aligned: 170
Modelled: 170
Confidence: 99.9%
Identity: 45%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein vp0806;
PDBTitle: the crystal structure of a domain of protein vp0806 (unknown function)2 from vibrio parahaemolyticus rimd 2210633

Phyre2
4 |
| c3dxbE_ |

### PDB 3dxb chain E

Region: 5 - 114
Aligned: 109
Modelled: 110
Confidence: 99.9%
Identity: 28%
PDB header:splicing, transcription
Chain: E: PDB Molecule:thioredoxin n-terminally fused to puf60(uhm);
PDBTitle: structure of the uhm domain of puf60 fused to thioredoxin

Phyre2
5 |
| c3p2aB_ |

### PDB 3p2a chain B

Region: 1 - 113
Aligned: 111
Modelled: 113
Confidence: 99.9%
Identity: 27%
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative thioredoxin-like protein;
PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis

Phyre2
6 |
| c3p2aA_ |

### PDB 3p2a chain A

Region: 4 - 114
Aligned: 109
Modelled: 111
Confidence: 99.9%
Identity: 28%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative thioredoxin-like protein;
PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis

Phyre2
7 |
| c3hz4A_ |

### PDB 3hz4 chain A

Region: 3 - 115
Aligned: 112
Modelled: 113
Confidence: 99.9%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin from methanosarcina mazei

Phyre2
8 |
| c3f8uA_ |

### PDB 3f8u chain A

Region: 4 - 112
Aligned: 109
Modelled: 109
Confidence: 99.9%
Identity: 23%
PDB header:immune system/isomerase
Chain: A: PDB Molecule:protein disulfide-isomerase a3erp57;
PDBTitle: tapasin/erp57 heterodimer

Phyre2
9 |
| c2i1uA_ |

### PDB 2i1u chain A

Region: 4 - 112
Aligned: 108
Modelled: 109
Confidence: 99.9%
Identity: 30%
PDB header:electron transport
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: mycobacterium tuberculosis thioredoxin c

Phyre2
10 |
| c2diyA_ |

### PDB 2diy chain A

Region: 2 - 117
Aligned: 114
Modelled: 116
Confidence: 99.9%
Identity: 16%
PDB header:protein binding
Chain: A: PDB Molecule:thioredoxin-like protein 2;
PDBTitle: the solution structure of the thioredoxin domain of human2 thioredoxin-like protein 2

Phyre2
11 |
| c2l5lA_ |

### PDB 2l5l chain A

Region: 2 - 114
Aligned: 113
Modelled: 113
Confidence: 99.9%
Identity: 24%
PDB header:transport protein
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: solution structure of thioredoxin from bacteroides vulgatus

Phyre2
12 |
| c2i4aA_ |

### PDB 2i4a chain A

Region: 4 - 109
Aligned: 105
Modelled: 106
Confidence: 99.9%
Identity: 24%
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin from the acidophile2 acetobacter aceti

Phyre2
13 |
| d1f9ma_ |

### PDB 1f9m chain A

Region: 2 - 109
Aligned: 107
Modelled: 108
Confidence: 99.9%
Identity: 17%
Fold: Thioredoxin fold
Superfamily: Thioredoxin-like
Family: Thioltransferase

Phyre2
14 |
| c3gnjD_ |

### PDB 3gnj chain D

Region: 2 - 112
Aligned: 110
Modelled: 111
Confidence: 99.9%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:thioredoxin domain protein;
PDBTitle: the crystal structure of a thioredoxin-related protein from2 desulfitobacterium hafniense dcb

Phyre2
15 |
| d1dbya_ |

### PDB 1dby chain A

Region: 5 - 110
Aligned: 105
Modelled: 106
Confidence: 99.9%
Identity: 27%
Fold: Thioredoxin fold
Superfamily: Thioredoxin-like
Family: Thioltransferase

Phyre2
16 |
| c2albA_ |

### PDB 2alb chain A

Region: 4 - 110
Aligned: 107
Modelled: 107
Confidence: 99.9%
Identity: 24%
PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide-isomerase a3;
PDBTitle: nmr structure of the n-terminal domain a of the2 glycoprotein chaperone erp57

Phyre2
17 |
| c2dj0A_ |

### PDB 2dj0 chain A

Region: 2 - 106
Aligned: 105
Modelled: 105
Confidence: 99.9%
Identity: 20%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:thioredoxin-related transmembrane protein 2;
PDBTitle: the solution structure of the thioredoxin domain of human2 thioredoxin-related transmembrane protein 2

Phyre2
18 |
| c3ed3A_ |

### PDB 3ed3 chain A

Region: 2 - 112
Aligned: 110
Modelled: 111
Confidence: 99.9%
Identity: 15%
PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide-isomerase mpd1;
PDBTitle: crystal structure of the yeast dithiol/disulfide2 oxidoreductase mpd1p

Phyre2
19 |
| d1thxa_ |

### PDB 1thx chain A

Region: 4 - 110
Aligned: 106
Modelled: 107
Confidence: 99.9%
Identity: 21%
Fold: Thioredoxin fold
Superfamily: Thioredoxin-like
Family: Thioltransferase

Phyre2
20 |
| d1xwaa_ |

### PDB 1xwa chain A

Region: 1 - 110
Aligned: 109
Modelled: 110
Confidence: 99.9%
Identity: 19%
Fold: Thioredoxin fold
Superfamily: Thioredoxin-like
Family: Thioltransferase

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |
58 |
59 |
60 |
61 |
62 |
63 |
64 |
65 |
66 |
67 |
68 |
69 |
70 |
71 |
72 |
73 |
74 |
75 |
76 |
77 |
78 |
79 |
80 |
81 |
82 |
83 |
84 |
85 |
86 |
87 |
88 |
89 |
90 |
91 |
92 |
93 |
94 |
95 |
96 |
97 |
98 |
99 |
100 |
101 |
102 |
103 |
104 |
105 |
106 |
107 |
108 |
109 |
110 |
111 |
112 |
113 |
114 |
115 |
116 |
117 |
118 |
119 |
120 |
121 |
122 |
123 |
124 |
125 |
126 |
127 |
128 |
129 |
130 |
131 |
132 |
133 |
134 |
135 |
136 |
137 |
138 |
139 |
140 |
141 |
142 |
143 |
144 |
145 |
146 |
147 |
148 |
149 |
150 |
151 |
152 |
153 |
154 |
155 |
156 |
157 |
158 |
159 |
160 |
161 |
162 |
163 |
164 |
165 |
166 |
167 |
168 |
169 |
170 |
171 |
172 |
173 |
174 |
175 |
176 |
177 |
178 |
179 |
180 |
181 |
182 |
183 |
184 |
185 |
186 |
187 |
188 |
189 |
190 |
191 |
192 |
193 |
194 |
195 |
196 |
197 |
198 |
199 |
200 |
201 |
202 |
203 |
204 |
205 |
206 |
207 |
208 |
209 |
210 |
211 |
212 |
213 |
214 |
215 |
216 |
217 |
218 |
219 |
220 |
221 |
222 |
223 |
224 |
225 |
226 |
227 |
228 |
229 |
230 |
231 |
232 |
233 |
234 |
235 |
236 |
237 |
238 |
239 |
240 |
241 |
242 |
243 |
244 |
245 |
246 |
247 |
248 |
249 |
250 |
251 |
252 |
253 |
254 |
255 |
256 |
257 |
258 |
259 |
260 |
261 |
262 |
263 |
264 |
265 |
266 |
267 |
268 |
269 |
270 |
271 |
272 |
273 |
274 |
275 |
276 |
277 |
278 |
279 |
280 |
281 |
282 |
283 |
284 |
285 |
286 |
287 |
288 |
289 |
290 |
291 |
292 |
293 |
294 |
295 |
296 |
297 |
298 |
299 |
300 |
301 |
302 |
303 |
304 |
305 |
306 |
307 |
308 |
309 |
310 |
311 |
312 |
313 |
314 |
315 |
316 |
317 |
318 |
319 |
320 |
321 |
322 |
323 |
324 |
325 |
326 |
327 |
328 |
329 |
330 |
331 |
332 |
333 |
334 |
335 |
336 |
337 |
338 |
339 |
340 |
341 |
342 |
343 |
344 |
345 |
346 |
347 |
348 |
349 |
350 |
351 |
352 |
353 |
354 |
355 |
356 |
357 |
358 |
359 |
360 |
361 |
362 |
363 |
364 |
365 |
366 |
367 |
368 |
369 |
370 |
371 |
372 |
373 |
374 |
375 |
376 |
377 |
378 |
379 |
380 |
381 |
382 |
383 |
384 |
385 |
386 |
387 |
388 |
389 |
390 |
391 |
392 |
393 |
394 |
395 |
396 |
397 |
398 |
399 |
400 |
401 |
402 |
403 |
404 |
405 |
406 |
407 |
408 |
409 |
410 |
411 |
412 |
413 |
414 |
415 |
416 |
417 |
418 |
419 |
420 |
421 |
422 |
423 |
424 |
425 |
426 |
427 |
428 |
429 |
430 |
431 |
432 |
433 |
434 |
435 |
436 |
437 |
438 |
439 |
440 |
441 |
442 |
443 |
444 |
445 |
446 |
447 |
448 |
449 |
450 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3qdnA_ |
|  | 100.0 | 93 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin protein; PDBTitle: putative thioredoxin protein from salmonella typhimurium
2 | c2pptA_ |
|  | 99.9 | 25 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-2; PDBTitle: crystal structure of thioredoxin-2
3 | c2r5sB_ |
|  | 99.9 | 45 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp0806; PDBTitle: the crystal structure of a domain of protein vp0806 (unknown function)2 from vibrio parahaemolyticus rimd 2210633
4 | c3dxbE_ |
|  | 99.9 | 28 | PDB header:splicing, transcription Chain: E: PDB Molecule:thioredoxin n-terminally fused to puf60(uhm); PDBTitle: structure of the uhm domain of puf60 fused to thioredoxin
5 | c3p2aB_ |
|  | 99.9 | 27 | PDB header:oxidoreductase Chain: B: PDB Molecule:putative thioredoxin-like protein; PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis
6 | c3p2aA_ |
|  | 99.9 | 28 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin-like protein; PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis
7 | c3hz4A_ |
|  | 99.9 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from methanosarcina mazei
8 | c3f8uA_ |
|  | 99.9 | 23 | PDB header:immune system/isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a3erp57; PDBTitle: tapasin/erp57 heterodimer
9 | c2i1uA_ |
|  | 99.9 | 30 | PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: mycobacterium tuberculosis thioredoxin c
10 | c2diyA_ |
|  | 99.9 | 16 | PDB header:protein binding Chain: A: PDB Molecule:thioredoxin-like protein 2; PDBTitle: the solution structure of the thioredoxin domain of human2 thioredoxin-like protein 2
11 | c2l5lA_ |
|  | 99.9 | 24 | PDB header:transport protein Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution structure of thioredoxin from bacteroides vulgatus
12 | c2i4aA_ |
|  | 99.9 | 24 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from the acidophile2 acetobacter aceti
13 | d1f9ma_ |
|  | 99.9 | 17 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
14 | c3gnjD_ |
|  | 99.9 | 19 | PDB header:structural genomics, unknown function Chain: D: PDB Molecule:thioredoxin domain protein; PDBTitle: the crystal structure of a thioredoxin-related protein from2 desulfitobacterium hafniense dcb
15 | d1dbya_ |
|  | 99.9 | 27 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
16 | c2albA_ |
|  | 99.9 | 24 | PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a3; PDBTitle: nmr structure of the n-terminal domain a of the2 glycoprotein chaperone erp57
17 | c2dj0A_ |
|  | 99.9 | 20 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:thioredoxin-related transmembrane protein 2; PDBTitle: the solution structure of the thioredoxin domain of human2 thioredoxin-related transmembrane protein 2
18 | c3ed3A_ |
|  | 99.9 | 15 | PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase mpd1; PDBTitle: crystal structure of the yeast dithiol/disulfide2 oxidoreductase mpd1p
19 | d1thxa_ |
|  | 99.9 | 21 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
20 | d1xwaa_ |
|  | 99.9 | 19 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
21 | c2wz9A_ |
| not modelled | 99.9 | 16 | PDB header:protein binding Chain: A: PDB Molecule:glutaredoxin-3; PDBTitle: crystal structure of the thioredoxin domain of human txnl2
22 | d2trxa_ |
| not modelled | 99.9 | 28 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
23 | d1ep7a_ |
| not modelled | 99.9 | 24 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
24 | c3hypB_ |
| not modelled | 99.9 | 23 | PDB header:electron transport Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of bacteroides fragilis trxp_s105g mutant
25 | c2vlvA_ |
| not modelled | 99.9 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin h isoform 2.; PDBTitle: crystal structure of barley thioredoxin h isoform 2 in2 partially radiation-reduced state
26 | c3tcoA_ |
| not modelled | 99.9 | 30 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin (trxa-1); PDBTitle: crystallographic and spectroscopic characterization of sulfolobus2 solfataricus trxa1 provide insights into the determinants of3 thioredoxin fold stability
27 | c2vocA_ |
| not modelled | 99.9 | 26 | PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: thioredoxin a active site mutants form mixed disulfide2 dimers that resemble enzyme-substrate reaction3 intermediate
28 | c1w89E_ |
| not modelled | 99.9 | 32 | PDB header:electron transport Chain: E: PDB Molecule:thioredoxin; PDBTitle: structure of the reduced form of human thioredoxin 2
29 | c1t00A_ |
| not modelled | 99.9 | 28 | PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: the structure of thioredoxin from s. coelicolor
30 | c2xbqB_ |
| not modelled | 99.9 | 22 | PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of reduced schistosoma mansoni2 thioredoxin pre-protein at 1.7 angstrom
31 | c2o7kA_ |
| not modelled | 99.9 | 36 | PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: s. aureus thioredoxin
32 | d1xfla_ |
| not modelled | 99.9 | 19 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
33 | c2l6dA_ |
| not modelled | 99.9 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution structure of desulfothioredoxin from desulfovibrio vulgaris2 hildenborough in its reduced form
34 | c3apsA_ |
| not modelled | 99.9 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of trx4 domain of erdj5
35 | d1fb6a_ |
| not modelled | 99.9 | 30 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
36 | c2vimA_ |
| not modelled | 99.9 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: x-ray structure of fasciola hepatica thioredoxin
37 | c1x5dA_ |
| not modelled | 99.9 | 20 | PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a6; PDBTitle: the solution structure of the second thioredoxin-like2 domain of human protein disulfide-isomerase a6
38 | c1xbsA_ |
| not modelled | 99.9 | 18 | PDB header:transcription, cell cycle Chain: A: PDB Molecule:dim1-like protein; PDBTitle: crystal structure of human dim2: a dim1-like protein
39 | c2r2jA_ |
| not modelled | 99.9 | 23 | PDB header:chaperone Chain: A: PDB Molecule:thioredoxin domain-containing protein 4; PDBTitle: crystal structure of human erp44
40 | d1ti3a_ |
| not modelled | 99.9 | 18 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
41 | d1qgva_ |
| not modelled | 99.9 | 14 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:spliceosomal protein U5-15Kd
42 | d1gh2a_ |
| not modelled | 99.9 | 22 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
43 | d1m7ta_ |
| not modelled | 99.9 | 27 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
44 | c2b5eA_ |
| not modelled | 99.9 | 21 | PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase; PDBTitle: crystal structure of yeast protein disulfide isomerase
45 | c1a8yA_ |
| not modelled | 99.9 | 20 | PDB header:calcium-binding protein Chain: A: PDB Molecule:calsequestrin; PDBTitle: crystal structure of calsequestrin from rabbit skeletal muscle2 sarcoplasmic reticulum at 2.4 a resolution
46 | c1sjiA_ |
| not modelled | 99.9 | 16 | PDB header:metal binding protein Chain: A: PDB Molecule:calsequestrin, cardiac muscle isoform; PDBTitle: comparing skeletal and cardiac calsequestrin structures and2 their calcium binding: a proposed mechanism for coupled3 calcium binding and protein polymerization
47 | c2dmlA_ |
| not modelled | 99.9 | 23 | PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a6; PDBTitle: the solution structure of the first thioredoxin domain of2 mouse protein disulfide-isomerase a6
48 | c2dizA_ |
| not modelled | 99.9 | 23 | PDB header:electron transport Chain: A: PDB Molecule:thioredoxin domain-containing protein 5; PDBTitle: the solution structure of the third thioredoxin domain of2 human thioredoxin domain-containing protein 5
49 | c3d22A_ |
| not modelled | 99.9 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin h-type; PDBTitle: crystal structure of a poplar thioredoxin h mutant,2 pttrxh4c61s
50 | c2e0qA_ |
| not modelled | 99.9 | 35 | PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of k53e thioredoxin from sulfolobus2 tokodaii strain7
51 | c2vm2C_ |
| not modelled | 99.9 | 20 | PDB header:oxidoreductase Chain: C: PDB Molecule:thioredoxin h isoform 1.; PDBTitle: crystal structure of barley thioredoxin h isoform 12 crystallized using peg as precipitant
52 | c2vafA_ |
| not modelled | 99.9 | 20 | PDB header:metal-binding protein Chain: A: PDB Molecule:calsequestrin-2; PDBTitle: crystal structure of human cardiac calsequestrin
53 | c2yzuA_ |
| not modelled | 99.9 | 37 | PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of oxidized thioredoxin from thermus thermophilus2 hb8
54 | d1nw2a_ |
| not modelled | 99.9 | 35 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
55 | d2ifqa1 |
| not modelled | 99.8 | 25 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
56 | c2qc7A_ |
| not modelled | 99.8 | 16 | PDB header:chaperone Chain: A: PDB Molecule:endoplasmic reticulum protein erp29; PDBTitle: crystal structure of the protein-disulfide isomerase related chaperone2 erp29
57 | d1syra_ |
| not modelled | 99.8 | 22 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
58 | c3emxB_ |
| not modelled | 99.8 | 18 | PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from aeropyrum pernix
59 | c3apoA_ |
| not modelled | 99.8 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of full-length erdj5
60 | c2l57A_ |
| not modelled | 99.8 | 20 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of an uncharacterized thioredoin-like protein from2 clostridium perfringens
61 | d1r26a_ |
| not modelled | 99.8 | 15 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
62 | c2oe0B_ |
| not modelled | 99.8 | 21 | PDB header:electron transport Chain: B: PDB Molecule:thioredoxin-3; PDBTitle: crystal structure of mitochondrial thioredoxin 3 from2 saccharomyces cerevisiae
63 | c2qsiB_ |
| not modelled | 99.8 | 20 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative hydrogenase expression/formation protein hupg; PDBTitle: crystal structure of putative hydrogenase expression/formation protein2 hupg from rhodopseudomonas palustris cga009
64 | c1x5eA_ |
| not modelled | 99.8 | 23 | PDB header:electron transport Chain: A: PDB Molecule:thioredoxin domain containing protein 1; PDBTitle: the solution structure of the thioredoxin-like domain of2 human thioredoxin-related transmembrane protein
65 | d2b5ea4 |
| not modelled | 99.8 | 21 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like
66 | c3h79A_ |
| not modelled | 99.8 | 10 | PDB header:unknown function Chain: A: PDB Molecule:thioredoxin-like protein; PDBTitle: crystal structure of trypanosoma cruzi thioredoxin-like hypothetical2 protein q4dv70
67 | d1j08a2 |
| not modelled | 99.8 | 16 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like
68 | c2i9hA_ |
| not modelled | 99.8 | 26 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin i; PDBTitle: nmr solution structure of the reduced form of thioredoxin 12 from yeast (trx1)
69 | d1oaza_ |
| not modelled | 99.8 | 24 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
70 | c2dj1A_ |
| not modelled | 99.8 | 26 | PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a4; PDBTitle: the solution structure of the first thioredoxin domain of2 mouse protein disulfide-isomerase a4
71 | c3ul3A_ |
| not modelled | 99.8 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: structural insights into thioredoxin-2: a component of malaria2 parasite protein secretion machinery
72 | c2j23A_ |
| not modelled | 99.8 | 26 | PDB header:immune protein Chain: A: PDB Molecule:thioredoxin; PDBTitle: cross-reactivity and crystal structure of malassezia2 sympodialis thioredoxin (mala s 13), a member of a new pan-3 allergen family
73 | d1a8la2 |
| not modelled | 99.8 | 19 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like
74 | d1a8ya1 |
| not modelled | 99.8 | 17 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Calsequestrin
75 | c1v98A_ |
| not modelled | 99.8 | 30 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure analysis of thioredoxin from thermus thermophilus
76 | c3cxgA_ |
| not modelled | 99.8 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: crystal structure of plasmodium falciparum thioredoxin, pfi0790w
77 | c2f51B_ |
| not modelled | 99.8 | 25 | PDB header:electron transport Chain: B: PDB Molecule:thioredoxin; PDBTitle: structure of trichomonas vaginalis thioredoxin
78 | c2dj2A_ |
| not modelled | 99.8 | 22 | PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a4; PDBTitle: the solution structure of the second thioredoxin domain of2 mouse protein disulfide-isomerase a4
79 | c3idvA_ |
| not modelled | 99.8 | 24 | PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a4; PDBTitle: crystal structure of the a0a fragment of erp72
80 | d1zmaa1 |
| not modelled | 99.8 | 11 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
81 | c2dbcA_ |
| not modelled | 99.8 | 19 | PDB header:signaling protein Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of the thioredoxin-like domain of2 phosducin-like protein 2(pdcl2)
82 | c3apqB_ |
| not modelled | 99.8 | 17 | PDB header:oxidoreductase Chain: B: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of j-trx1 fragment of erdj5
83 | c1ovnA_ |
| not modelled | 99.8 | 9 | PDB header:chaperone Chain: A: PDB Molecule:windbeutel; PDBTitle: crystal structure and functional analysis of drosophila2 wind-- a pdi-related protein
84 | d1meka_ |
| not modelled | 99.8 | 27 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like
85 | c3d6iB_ |
| not modelled | 99.8 | 17 | PDB header:oxidoreductase Chain: B: PDB Molecule:monothiol glutaredoxin-3; PDBTitle: structure of the thioredoxin-like domain of yeast2 glutaredoxin 3
86 | c2dj3A_ |
| not modelled | 99.8 | 25 | PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a4; PDBTitle: the solution structure of the third thioredoxin domain of2 mouse protein disulfide-isomerase a4
87 | d2hfda1 |
| not modelled | 99.8 | 19 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:HyaE-like
88 | c1x5cA_ |
| not modelled | 99.8 | 17 | PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase; PDBTitle: the solution structure of the second thioredoxin-like2 domain of human protein disulfide-isomerase
89 | d1g7ea_ |
| not modelled | 99.8 | 15 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ERP29 N domain-like
90 | d1v9wa_ |
| not modelled | 99.7 | 10 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Txnl5-like
91 | d1woua_ |
| not modelled | 99.7 | 15 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Txnl5-like
92 | d2b5ea1 |
| not modelled | 99.7 | 15 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like
93 | c3pe3D_ |
| not modelled | 99.7 | 14 | PDB header:transferase Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n- PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate
94 | d1fo5a_ |
| not modelled | 99.7 | 20 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
95 | c1b9xC_ |
| not modelled | 99.7 | 16 | PDB header:signaling protein Chain: C: PDB Molecule:protein (phosducin); PDBTitle: structural analysis of phosducin and its phosphorylation-2 regulated interaction with transducin
96 | d2c0ga2 |
| not modelled | 99.7 | 10 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ERP29 N domain-like
97 | d1a8la1 |
| not modelled | 99.7 | 16 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like
98 | c2dmmA_ |
| not modelled | 99.7 | 17 | PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a3; PDBTitle: the solution structure of the second thioredoxin domain of2 human protein disulfide-isomerase a3
99 | c3g9bA_ |
| not modelled | 99.7 | 12 | PDB header:transferase Chain: A: PDB Molecule:dolichyl-diphosphooligosaccharide-protein PDBTitle: crystal structure of reduced ost6l
100 | d2fwha1 |
| not modelled | 99.7 | 16 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
101 | d2djja1 |
| not modelled | 99.7 | 21 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like
102 | d1j08a1 |
| not modelled | 99.7 | 16 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like
103 | c3uemA_ |
| not modelled | 99.7 | 19 | PDB header:chaperone Chain: A: PDB Molecule:protein disulfide-isomerase; PDBTitle: crystal structure of human pdi bb'a' domains
104 | d2trcp_ |
| not modelled | 99.7 | 17 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Phosducin
105 | c1j08A_ |
| not modelled | 99.7 | 16 | PDB header:isomerase Chain: A: PDB Molecule:glutaredoxin-like protein; PDBTitle: crystal structure of glutaredoxin-like protein from2 pyrococcus horikoshii
106 | c2fgxA_ |
| not modelled | 99.7 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: solution nmr structure of protein ne2328 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net3.
107 | c2kucA_ |
| not modelled | 99.7 | 16 | PDB header:isomerase Chain: A: PDB Molecule:putative disulphide-isomerase; PDBTitle: solution structure of a putative disulphide-isomerase from bacteroides2 thetaiotaomicron
108 | d1a0rp_ |
| not modelled | 99.7 | 17 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Phosducin
109 | c1zypB_ |
| not modelled | 99.6 | 17 | PDB header:oxidoreductase Chain: B: PDB Molecule:alkyl hydroperoxide reductase subunit f; PDBTitle: synchrotron reduced form of the n-terminal domain of2 salmonella typhimurium ahpf
110 | c3kp8A_ |
| not modelled | 99.6 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein; PDBTitle: the thioredoxin-like domain of a vkor homolog from2 synechococcus sp.
111 | c3dmlA_ |
| not modelled | 99.6 | 12 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the periplasmic thioredoxin soxs from2 paracoccus pantotrophus (reduced form)
112 | d1nhoa_ |
| not modelled | 99.6 | 16 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
113 | c2hlsB_ |
| not modelled | 99.6 | 13 | PDB header:oxidoreductase Chain: B: PDB Molecule:protein disulfide oxidoreductase; PDBTitle: the crystal structure of a protein disulfide oxidoreductase from2 aeropyrum pernix k1
114 | d1hyua4 |
| not modelled | 99.6 | 18 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like
115 | c2aytB_ |
| not modelled | 99.5 | 10 | PDB header:oxidoreductase Chain: B: PDB Molecule:glutaredoxin-like protein; PDBTitle: the crystal structure of a protein disulfide oxidoreductase from2 aquifex aeolicus
116 | c2hyxA_ |
| not modelled | 99.5 | 17 | PDB header:unknown function Chain: A: PDB Molecule:protein dipz; PDBTitle: structure of the c-terminal domain of dipz from mycobacterium2 tuberculosis
117 | c3f9uA_ |
| not modelled | 99.5 | 18 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported cytochrome c biogenesis-related protein; PDBTitle: crystal structure of c-terminal domain of putative exported cytochrome2 c biogenesis-related protein from bacteroides fragilis
118 | d1z5ye1 |
| not modelled | 99.5 | 19 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like
119 | c3fk8A_ |
| not modelled | 99.4 | 20 | PDB header:isomerase Chain: A: PDB Molecule:disulphide isomerase; PDBTitle: the crystal structure of disulphide isomerase from xylella fastidiosa2 temecula1
120 | c1fchB_ |
| not modelled | 99.4 | 19 | PDB header:signaling protein Chain: B: PDB Molecule:peroxisomal targeting signal 1 receptor; PDBTitle: crystal structure of the pts1 complexed to the tpr region2 of human pex5

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0