17/01/2012 04:17:33 : INFO  : Run start: Tue Jan 17 04:17:31 GMT 2012
17/01/2012 04:17:42 : INFO  : Initialised job
17/01/2012 04:17:45 : INFO  : Renaming log file 'phyre2_20120117_041730.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/2ccd73a1b03d5dbb/phyre_20120117_041730.log'
17/01/2012 04:17:47 : INFO  : Initialised job:
Sequence
>batch____
MSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAK
LDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDKVLPREEELKAQQ
AMQLMQESNYTDALPLLKDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLKTIPLQDQD
TRYQGLVAQIELLKQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF
GHLRKDLTAADGQTRKTFQEILAALGTGDALASKYRRQLYALLY

17/01/2012 04:17:48 : INFO  : Checked sequence
17/01/2012 04:17:54 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 04:17:55 : INFO  : PSI-BLAST 3 iterations
17/01/2012 04:20:09 : INFO  : PSI-BLAST 5 iterations
17/01/2012 04:24:18 : INFO  : Finished PSI-BLAST
17/01/2012 04:24:22 : INFO  : Running Buildali to generate a3m file
17/01/2012 05:40:06 : INFO  : Converting to HMM
17/01/2012 05:40:15 : INFO  : Calibrating HMM
17/01/2012 05:40:38 : INFO  : Searching HMM database
17/01/2012 05:46:50 : INFO  : Finished buildali
17/01/2012 05:46:53 : INFO  : Predicting secondary structure
17/01/2012 05:47:07 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 05:47:09 : INFO  : Predicting Disordered regions
17/01/2012 05:47:16 : INFO  : Predicted Disorder (Disopred)
17/01/2012 05:47:20 : INFO  : Running memsat_svm check
17/01/2012 05:50:53 : INFO  : Globular protein
17/01/2012 05:50:55 : INFO  : Predicted Transmembrane (memsat_svm) ID '2ccd73a1b03d5dbb'
17/01/2012 05:50:58 : INFO  : Initialising fold library search
17/01/2012 05:51:04 : INFO  : Initialised search input
17/01/2012 05:51:08 : INFO  : Building Ensemble models
17/01/2012 05:51:14 : INFO  : Building hh.c3qdnA_.model.1.pdb
17/01/2012 05:51:40 : INFO  : Building c3qdnA_.1.pdb
17/01/2012 05:52:03 : INFO  : Building c2pptA_.2.pdb
17/01/2012 05:52:27 : INFO  : Building c2r5sB_.3.pdb
17/01/2012 05:52:53 : INFO  : Building c3dxbE_.4.pdb
17/01/2012 05:53:19 : INFO  : Building c3p2aB_.5.pdb
17/01/2012 05:53:42 : INFO  : Building c3p2aA_.6.pdb
17/01/2012 05:54:09 : INFO  : Building c3hz4A_.7.pdb
17/01/2012 05:54:36 : INFO  : Building c3f8uA_.8.pdb
17/01/2012 05:55:02 : INFO  : Building c2i1uA_.9.pdb
17/01/2012 05:55:28 : INFO  : Building c2diyA_.10.pdb
17/01/2012 05:55:55 : INFO  : Building c2l5lA_.11.pdb
17/01/2012 05:56:20 : INFO  : Building c2i4aA_.12.pdb
17/01/2012 05:56:45 : INFO  : Building d1f9ma_.13.pdb
17/01/2012 05:57:12 : INFO  : Building c3gnjD_.14.pdb
17/01/2012 05:57:37 : INFO  : Building d1dbya_.15.pdb
17/01/2012 05:58:02 : INFO  : Building c2albA_.16.pdb
17/01/2012 05:58:28 : INFO  : Building c2dj0A_.17.pdb
17/01/2012 05:58:53 : INFO  : Building c3ed3A_.18.pdb
17/01/2012 05:59:16 : INFO  : Building d1thxa_.19.pdb
17/01/2012 05:59:39 : INFO  : Building d1xwaa_.20.pdb
17/01/2012 06:00:32 : INFO  : Finished HH model building
17/01/2012 06:00:36 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 06:01:37 : INFO  : html domain output complete ID '2ccd73a1b03d5dbb'
17/01/2012 06:18:47 : INFO  : Run end  : Tue Jan 17 06:18:45 GMT 2012
