Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	G	L	P	N	S	S	N	A	L	Q	Q	W	H	H	L	F	E	A	E	G	T	K	R	S	P	Q	A	Q	Q	H	L	Q	Q	L	L	R	T	G	L	P	T	R	K	H	E	N	W	K	Y	T	P	L	E	G	L	I	N	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?										?		?	?	?	?	?																																				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	F	V	S	I	A	G	E	I	S	P	Q	Q	R	D	A	L	A	L	T	L	D	S	V	R	L	V	F	V	D	G	R	Y	V	P	A	L	S	D	A	T	E	G	S	G	Y	E	V	S	I	N	D	D	R	Q	G	L	P	D	A
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?	?	?	?	?																												?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	Q	A	E	V	F	L	H	L	T	E	S	L	A	Q	S	V	T	H	I	A	V	K	R	G	Q	R	P	A	K	P	L	L	L	M	H	I	T	Q	G	V	A	G	E	E	V	N	T	A	H	Y	R	H	H	L	D	L	A	E	G
Secondary structure
SS confidence
Disorder																																										?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	E	A	T	V	I	E	H	F	V	S	L	N	D	A	R	H	F	T	G	A	R	F	T	I	N	V	A	A	N	A	H	L	Q	H	I	K	L	A	F	E	N	P	L	S	H	H	F	A	H	N	D	L	L	L	A	E	D	A	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	F	S	H	S	F	L	L	G	G	A	V	L	R	H	N	T	S	T	Q	L	N	G	E	N	S	T	L	R	I	N	S	L	A	M	P	V	K	N	E	V	C	D	T	R	T	W	L	E	H	N	K	G	F	C	N	S	R	Q	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		H	K	T	I	V	S	D	K	G	R	A	V	F	N	G	L	I	N	V	A	Q	H	A	I	K	T	D	G	Q	M	T	N	N	N	L	L	M	G	K	L	A	E	V	D	T	K	P	Q	L	E	I	Y	A	D	D	V	K	C	S	H
Secondary structure
SS confidence
Disorder																									?	?	?	?	?				?								?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		G	A	T	V	G	R	I	D	D	E	Q	I	F	Y	L	R	S	R	G	I	N	Q	Q	D	A	Q	Q	M	I	I	Y	A	F	A	A	E	L	T	E	A	L	R	D	E	G	L	K	Q	Q	V	L	A	R	I	G	Q	R	L	P	G
Secondary structure
SS confidence
Disorder					?	?	?																																																				?	?	?
Disorder confidence
		.	.	.
Sequence		G	A	R
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1vh4 chain A Region: 9 - 421 Aligned: 410 Modelled: 413 Confidence: 100.0% Identity: 100% Fold: Single-stranded right-handed beta-helix Superfamily: Stabilizer of iron transporter SufD Family: Stabilizer of iron transporter SufD Phyre2 PDB 2dag chain A Region: 362 - 391 Aligned: 30 Modelled: 30 Confidence: 74.2% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) Phyre2 PDB 1whc chain A Region: 362 - 391 Aligned: 30 Modelled: 30 Confidence: 67.3% Identity: 10% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 1dd9 chain A Region: 365 - 387 Aligned: 23 Modelled: 23 Confidence: 63.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: structure of the dnag catalytic core Phyre2 PDB 1dd9 chain A Region: 365 - 387 Aligned: 23 Modelled: 23 Confidence: 63.0% Identity: 17% Fold: DNA primase core Superfamily: DNA primase core Family: DNA primase DnaG catalytic core Phyre2 PDB 2dai chain A Region: 366 - 391 Aligned: 26 Modelled: 26 Confidence: 62.2% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin associated domain containing 1; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin associated domain containing 1 (ubadc1) Phyre2 PDB 3sf5 chain D Region: 152 - 280 Aligned: 125 Modelled: 129 Confidence: 58.4% Identity: 13% PDB header:chaperone Chain: D: PDB Molecule:urease accessory protein ureh; PDBTitle: crystal structure of helicobacter pylori urease accessory protein2 uref/h complex Phyre2 PDB 1vek chain A Region: 366 - 391 Aligned: 26 Modelled: 26 Confidence: 54.2% Identity: 27% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 2crn chain A Region: 362 - 391 Aligned: 30 Modelled: 30 Confidence: 54.0% Identity: 10% PDB header:immune system Chain: A: PDB Molecule:ubash3a protein; PDBTitle: solution structure of the uba domain of human ubash3a2 protein Phyre2 PDB 1p32 chain A Region: 374 - 396 Aligned: 23 Modelled: 23 Confidence: 53.8% Identity: 26% Fold: Mitochondrial glycoprotein MAM33-like Superfamily: Mitochondrial glycoprotein MAM33-like Family: Mitochondrial glycoprotein MAM33-like Phyre2 PDB 1nui chain A domain 1 Region: 374 - 388 Aligned: 15 Modelled: 15 Confidence: 52.5% Identity: 33% Fold: DNA primase core Superfamily: DNA primase core Family: Primase fragment of primase-helicase protein Phyre2 PDB 2csb chain A domain 4 Region: 378 - 408 Aligned: 31 Modelled: 31 Confidence: 50.8% Identity: 19% Fold: SAM domain-like Superfamily: RuvA domain 2-like Family: Topoisomerase V repeat domain Phyre2 PDB 1rfz chain A Region: 363 - 417 Aligned: 54 Modelled: 53 Confidence: 48.3% Identity: 17% Fold: YutG-like Superfamily: YutG-like Family: YutG-like Phyre2 PDB 1yqf chain A domain 1 Region: 374 - 396 Aligned: 23 Modelled: 23 Confidence: 47.7% Identity: 35% Fold: Mitochondrial glycoprotein MAM33-like Superfamily: Mitochondrial glycoprotein MAM33-like Family: Mitochondrial glycoprotein MAM33-like Phyre2 PDB 3qv0 chain A Region: 374 - 396 Aligned: 23 Modelled: 23 Confidence: 44.4% Identity: 39% PDB header:protein binding Chain: A: PDB Molecule:mitochondrial acidic protein mam33; PDBTitle: crystal structure of saccharomyces cerevisiae mam33 Phyre2 PDB 3jv1 chain A Region: 374 - 396 Aligned: 23 Modelled: 23 Confidence: 41.8% Identity: 30% PDB header:hydrolase Chain: A: PDB Molecule:p22 protein; PDBTitle: crystal structure of the trypanosoma brucei p22 protein Phyre2 PDB 1q57 chain G Region: 374 - 387 Aligned: 14 Modelled: 14 Confidence: 41.5% Identity: 36% PDB header:transferase Chain: G: PDB Molecule:dna primase/helicase; PDBTitle: the crystal structure of the bifunctional primase-helicase of2 bacteriophage t7 Phyre2 PDB 1wiv chain A Region: 365 - 391 Aligned: 27 Modelled: 27 Confidence: 39.7% Identity: 22% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 3ic3 chain C Region: 374 - 397 Aligned: 24 Modelled: 24 Confidence: 39.1% Identity: 33% PDB header:oxidoreductase Chain: C: PDB Molecule:putative pyruvate dehydrogenase; PDBTitle: structure of a putative pyruvate dehydrogenase from the photosynthetic2 bacterium rhodopseudomonas palustrus cga009 Phyre2 PDB 2crn chain A domain 1 Region: 368 - 391 Aligned: 24 Modelled: 24 Confidence: 38.6% Identity: 13% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 1 d1vh4a_ 2 c2dagA_ 3 d1whca_ 4 c1dd9A_ 5 d1dd9a_ 6 c2daiA_ 7 c3sf5D_ 8 d1veka_ 9 c2crnA_ 10 d1p32a_ 11 d1nuia1 12 d2csba4 13 d1rfza_ 14 d1yqfa1 15 c3qv0A_ 16 c3jv1A_ 17 c1q57G_ 18 d1wiva_ 19 c3ic3C_ 20 d2crna1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1vh4a_ 100.0 100 Fold:Single-stranded right-handed beta-helix Superfamily:Stabilizer of iron transporter SufD Family:Stabilizer of iron transporter SufD 2 c2dagA_ 74.2 17 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 3 d1whca_ 67.3 10 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 4 c1dd9A_ 63.0 17 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: structure of the dnag catalytic core 5 d1dd9a_ 63.0 17 Fold:DNA primase core Superfamily:DNA primase core Family:DNA primase DnaG catalytic core 6 c2daiA_ 62.2 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin associated domain containing 1; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin associated domain containing 1 (ubadc1) 7 c3sf5D_ 58.4 13 PDB header:chaperone Chain: D: PDB Molecule:urease accessory protein ureh; PDBTitle: crystal structure of helicobacter pylori urease accessory protein2 uref/h complex 8 d1veka_ 54.2 27 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 9 c2crnA_ 54.0 10 PDB header:immune system Chain: A: PDB Molecule:ubash3a protein; PDBTitle: solution structure of the uba domain of human ubash3a2 protein 10 d1p32a_ 53.8 26 Fold:Mitochondrial glycoprotein MAM33-like Superfamily:Mitochondrial glycoprotein MAM33-like Family:Mitochondrial glycoprotein MAM33-like 11 d1nuia1 52.5 33 Fold:DNA primase core Superfamily:DNA primase core Family:Primase fragment of primase-helicase protein 12 d2csba4 50.8 19 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 13 d1rfza_ 48.3 17 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 14 d1yqfa1 47.7 35 Fold:Mitochondrial glycoprotein MAM33-like Superfamily:Mitochondrial glycoprotein MAM33-like Family:Mitochondrial glycoprotein MAM33-like 15 c3qv0A_ 44.4 39 PDB header:protein binding Chain: A: PDB Molecule:mitochondrial acidic protein mam33; PDBTitle: crystal structure of saccharomyces cerevisiae mam33 16 c3jv1A_ 41.8 30 PDB header:hydrolase Chain: A: PDB Molecule:p22 protein; PDBTitle: crystal structure of the trypanosoma brucei p22 protein 17 c1q57G_ 41.5 36 PDB header:transferase Chain: G: PDB Molecule:dna primase/helicase; PDBTitle: the crystal structure of the bifunctional primase-helicase of2 bacteriophage t7 18 d1wiva_ 39.7 22 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 19 c3ic3C_ 39.1 33 PDB header:oxidoreductase Chain: C: PDB Molecule:putative pyruvate dehydrogenase; PDBTitle: structure of a putative pyruvate dehydrogenase from the photosynthetic2 bacterium rhodopseudomonas palustrus cga009 20 d2crna1 38.6 13 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 21 c2qh9B_ not modelled 37.2 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:upf0215 protein af_1433; PDBTitle: the crystal structure of a protein of unknown function from2 archaeoglobus fulgidus dsm 4304 22 c3fp5A_ not modelled 36.4 17 PDB header:lipid binding protein Chain: A: PDB Molecule:acyl-coa binding protein; PDBTitle: crystal structure of acbp from moniliophthora perniciosa 23 c2f46A_ not modelled 36.2 17 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative phosphatase (nma1982) from neisseria2 meningitidis z2491 at 1.41 a resolution 24 d2cpwa1 not modelled 34.1 21 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 25 c2cpwA_ not modelled 33.3 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cbl-interacting protein sts-1 variant; PDBTitle: solution structure of rsgi ruh-031, a uba domain from human2 cdna 26 d1n9pa_ not modelled 33.0 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Cytoplasmic domain of inward rectifier potassium channel 27 d1yqga1 not modelled 31.3 24 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:ProC C-terminal domain-like 28 c2au3A_ not modelled 29.1 35 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: crystal structure of the aquifex aeolicus primase (zinc binding and2 rna polymerase domains) 29 c2o2kA_ not modelled 28.9 22 PDB header:transferase Chain: A: PDB Molecule:methionine synthase; PDBTitle: crystal structure of the activation domain of human2 methionine synthase isoform/mutant d963e/k1071n 30 c2zc1A_ not modelled 28.8 33 PDB header:hydrolase Chain: A: PDB Molecule:phosphotriesterase; PDBTitle: organophosphorus hydrolase from deinococcus radiodurans 31 c2dakA_ not modelled 28.3 10 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the second uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 32 d2e1za2 not modelled 27.3 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 33 c2wknE_ not modelled 26.8 25 PDB header:hydrolase Chain: E: PDB Molecule:formamidase; PDBTitle: gamma lactamase from delftia acidovorans 34 d1g99a2 not modelled 26.3 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 35 d1mska_ not modelled 24.8 22 Fold:Methionine synthase activation domain-like Superfamily:Methionine synthase activation domain-like Family:Methionine synthase SAM-binding domain 36 d2ahra1 not modelled 20.6 10 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:ProC C-terminal domain-like 37 c1nuiA_ not modelled 20.5 33 PDB header:replication Chain: A: PDB Molecule:dna primase/helicase; PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein 38 d2ddha2 not modelled 20.2 13 Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:acyl-CoA oxidase C-terminal domains 39 d1vega_ not modelled 20.0 20 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 40 d1ivza_ not modelled 19.9 25 Fold:Ferredoxin-like Superfamily:SEA domain Family:SEA domain 41 c1tuuA_ not modelled 18.5 19 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: acetate kinase crystallized with atpgs 42 c3e3vA_ not modelled 18.4 13 PDB header:recombination Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of recx from lactobacillus salivarius 43 c3my3A_ not modelled 18.4 12 PDB header:transcription Chain: A: PDB Molecule:mterf domain-containing protein 1, mitochondrial; PDBTitle: crystal structure of human mitochondrial transcription termination2 factor 3 44 c2d9sA_ not modelled 18.2 33 PDB header:ligase Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase; PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna 45 c3khyA_ not modelled 18.0 19 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of a propionate kinase from francisella2 tularensis subsp. tularensis schu s4 46 d1ifya_ not modelled 16.7 11 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 47 c1sazA_ not modelled 16.6 19 PDB header:transferase Chain: A: PDB Molecule:probable butyrate kinase 2; PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima 48 c3zq4C_ not modelled 16.2 22 PDB header:hydrolase Chain: C: PDB Molecule:ribonuclease j 1; PDBTitle: unusual, dual endo- and exo-nuclease activity in the degradosome2 explained by crystal structure analysis of rnase j1 49 d1wfda_ not modelled 16.0 7 Fold:Spectrin repeat-like Superfamily:MIT domain Family:MIT domain 50 c1x3nA_ not modelled 15.8 15 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium 51 d2gcla1 not modelled 15.3 42 Fold:PH domain-like barrel Superfamily:PH domain-like Family:SSRP1-like 52 c3qyeA_ not modelled 15.2 17 PDB header:hydrolase activator Chain: A: PDB Molecule:tbc1 domain family member 1; PDBTitle: crystal structure of human tbc1d1 rabgap domain 53 d1saza2 not modelled 15.0 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 54 d2g3qa1 not modelled 14.5 13 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 55 d1kx5d_ not modelled 14.4 21 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 56 d1v3aa_ not modelled 14.0 34 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 57 c2e4fA_ not modelled 13.8 18 PDB header:transport protein Chain: A: PDB Molecule:g protein-activated inward rectifier potassium channel 2; PDBTitle: crystal structure of the cytoplasmic domain of g-protein-gated inward2 rectifier potassium channel kir3.2 58 c3rhgA_ not modelled 13.5 25 PDB header:hydrolase Chain: A: PDB Molecule:putative phophotriesterase; PDBTitle: crystal structure of amidohydrolase pmi1525 (target efi-500319) from2 proteus mirabilis hi4320 59 d1oqya1 not modelled 13.4 11 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 60 c3ff5B_ not modelled 13.3 8 PDB header:protein transport Chain: B: PDB Molecule:peroxisomal biogenesis factor 14; PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p 61 c1tlqA_ not modelled 12.6 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ypjq; PDBTitle: crystal structure of protein ypjq from bacillus subtilis, pfam duf64 62 d1tlqa_ not modelled 12.6 17 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 63 c2iirJ_ not modelled 12.6 22 PDB header:transferase Chain: J: PDB Molecule:acetate kinase; PDBTitle: acetate kinase from a hypothermophile thermotoga maritima 64 d2gu3a1 not modelled 12.5 36 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:PepSY-like 65 c3gypA_ not modelled 12.4 25 PDB header:chaperone Chain: A: PDB Molecule:histone chaperone rtt106; PDBTitle: rtt106p 66 c2gu3A_ not modelled 12.3 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ypmb protein; PDBTitle: ypmb protein from bacillus subtilis 67 c2do6A_ not modelled 12.2 19 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna 68 c3gztF_ not modelled 11.9 23 PDB header:virus Chain: F: PDB Molecule:outer capsid glycoprotein vp7; PDBTitle: vp7 recoated rotavirus dlp 69 c2kerA_ not modelled 11.9 43 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:alpha-amylase inhibitor z-2685; PDBTitle: alpha-amylase inhibitor parvulustat (z-2685) from2 streptomyces parvulus 70 d1eqzb_ not modelled 11.8 21 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 71 d1ok0a_ not modelled 11.8 29 Fold:alpha-Amylase inhibitor tendamistat Superfamily:alpha-Amylase inhibitor tendamistat Family:alpha-Amylase inhibitor tendamistat 72 c3p4iA_ not modelled 11.8 30 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: crystal structure of acetate kinase from mycobacterium avium 73 d1wjia_ not modelled 11.5 11 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 74 d1s32d_ not modelled 11.2 21 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 75 c3mhvC_ not modelled 11.0 12 PDB header:protein transport Chain: C: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of vps4 and vta1 76 c2w85A_ not modelled 10.6 8 PDB header:protein transport Chain: A: PDB Molecule:peroxisomal membrane anchor protein pex14; PDBTitle: structure of pex14 in compex with pex19 77 c3m66A_ not modelled 10.6 17 PDB header:transcription Chain: A: PDB Molecule:mterf domain-containing protein 1, mitochondrial; PDBTitle: crystal structure of human mitochondrial transcription termination2 factor 3 78 c1jrjA_ not modelled 10.4 17 PDB header:hormone/growth factor Chain: A: PDB Molecule:exendin-4; PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol 79 c3hy5A_ not modelled 10.4 23 PDB header:transport protein Chain: A: PDB Molecule:retinaldehyde-binding protein 1; PDBTitle: crystal structure of cralbp 80 d1oiza1 not modelled 10.1 19 Fold:RuvA C-terminal domain-like Superfamily:CRAL/TRIO N-terminal domain Family:CRAL/TRIO N-terminal domain 81 d1y9ia_ not modelled 9.7 15 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 82 c3dfgA_ not modelled 9.5 19 PDB header:recombination Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of recx: a potent inhibitor protein of2 reca from xanthomonas campestris 83 c3f4cA_ not modelled 9.4 30 PDB header:hydrolase Chain: A: PDB Molecule:organophosphorus hydrolase; PDBTitle: crystal structure of organophosphorus hydrolase from geobacillus2 stearothermophilus strain 10, with glycerol bound 84 c1ye9E_ not modelled 9.3 18 PDB header:oxidoreductase Chain: E: PDB Molecule:catalase hpii; PDBTitle: crystal structure of proteolytically truncated catalase2 hpii from e. coli 85 d1auaa1 not modelled 9.2 27 Fold:RuvA C-terminal domain-like Superfamily:CRAL/TRIO N-terminal domain Family:CRAL/TRIO N-terminal domain 86 c2akhZ_ not modelled 9.0 18 PDB header:protein transport Chain: Z: PDB Molecule:preprotein translocase sece subunit; PDBTitle: normal mode-based flexible fitted coordinates of a non-2 translocating secyeg protein-conducting channel into the3 cryo-em map of a secyeg-nascent chain-70s ribosome complex4 from e. coli 87 c3d5lA_ not modelled 8.6 13 PDB header:signaling protein Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of regulatory protein recx 88 c3rj1P_ not modelled 8.6 16 PDB header:transcription Chain: P: PDB Molecule:mediator of rna polymerase ii transcription subunit 17; PDBTitle: architecture of the mediator head module 89 d1abaa_ not modelled 8.5 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 90 c3k2gA_ not modelled 8.5 13 PDB header:resiniferatoxin binding protein Chain: A: PDB Molecule:resiniferatoxin-binding, phosphotriesterase- PDBTitle: crystal structure of a resiniferatoxin-binding protein from2 rhodobacter sphaeroides 91 c2hjmB_ not modelled 8.1 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein pf1176; PDBTitle: crystal structure of a singleton protein pf1176 from p. furiosus 92 d1tzyb_ not modelled 8.1 21 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 93 d1bf6a_ not modelled 8.0 30 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:Phosphotriesterase-like 94 c2jnhA_ not modelled 7.9 19 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of the uba domain from cbl-b 95 c2i7aA_ not modelled 7.8 16 PDB header:hydrolase Chain: A: PDB Molecule:calpain 13; PDBTitle: domain iv of human calpain 13 96 c3okzB_ not modelled 7.8 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative uncharacterized protein gbs0355; PDBTitle: crystal structure of protein gbs0355 from streptococcus agalactiae,2 northeast structural genomics consortium target sar127 97 d1y02a1 not modelled 7.8 23 Fold:LEM/SAP HeH motif Superfamily:SAP domain Family:SAP domain 98 c2fhgC_ not modelled 7.6 14 PDB header:hydrolase Chain: C: PDB Molecule:proteasome, beta subunit; PDBTitle: crystal structure of mycobacterial tuberculosis proteasome 99 c2vc7A_ not modelled 7.6 17 PDB header:hydrolase Chain: A: PDB Molecule:aryldialkylphosphatase; PDBTitle: structural basis for natural lactonase and promiscuous2 phosphotriesterase activities

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0