PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2akhZ_

Fold library id	PDB Header	Molecule	Title
c2akhZ_	PDB header: protein transport	Chain: Z: PDB Molecule: preprotein translocase sece subunit;	PDBTitle: normal mode-based flexible fitted coordinates of a non-2 translocating secyeg protein-conducting channel into the3 cryo-em map of a secyeg-nascent chain-70s ribosome complex4 from e. coli

Links to external resources
Added to library: Tue Mar 16 14:09:56 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K W V V V V A L L L V A I V G N Y L Y R D I M L P L R A L A V V I L I A A A G G V A L L T T K G K A T V A F A R E A R T E V R K V I W P T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T S S S S S S
T T G G G T T S
S S
S T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 .

Sequence R Q E T L H T T L I V A A V T A V M S L I L W G L D G I L V R L V S F I T G L R F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S G G G G T T T T T T T T T S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	W	V	V	V	V	A	L	L	L	V	A	I	V	G	N	Y	L	Y	R	D	I	M	L	P	L	R	A	L	A	V	V	I	L	I	A	A	A	G	G	V	A	L	L	T	T	K	G	K	A	T	V	A	F	A	R	E	A	R	T	E	V	R	K	V	I	W	P	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																G	G	G	T	S	S	S	S	S	S					T	T					G	G	G					T	T	S								S	S		S	T											T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Sequence	R	Q	E	T	L	H	T	T	L	I	V	A	A	V	T	A	V	M	S	L	I	L	W	G	L	D	G	I	L	V	R	L	V	S	F	I	T	G	L	R	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	G	G	G	G	T	T	T	T													T								T	T	T	T	S	S