Email l.a.kelley@imperial.ac.uk Description P75966 Date Thu Jan 5 12:16:33 GMT 2012 Unique Job ID 27e34be6dea04f27

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2omlA_ 100.0 94 PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue 2 c2olwB_ 100.0 95 PDB header:isomerase Chain: B: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue 3 c3dh3C_ 100.0 31 PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate 4 c1vioA_ 100.0 28 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase 5 c1kskA_ 100.0 32 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua 6 c2gmlA_ 100.0 35 PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of catalytic domain of e.coli rluf 7 d1vioa1 100.0 29 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 8 d1kska4 100.0 36 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 9 d1v9ka_ 100.0 17 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 10 c1v9fA_ 100.0 21 PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: crystal structure of catalytic domain of pseudouridine2 synthase rlud from escherichia coli 11 d1v9fa_ 100.0 21 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 12 c1qyuA_ 100.0 20 PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud 13 c2i82D_ 100.0 20 PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure 14 d2apoa2 98.8 13 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 15 d2ey4a2 98.8 17 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 16 c2ey4A_ 98.7 15 PDB header:isomerase/biosynthetic protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of a cbf5-nop10-gar1 complex 17 d1r3ea2 98.6 18 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 18 c2apoA_ 98.6 14 PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex 19 c3uaiA_ 98.5 15 PDB header:isomerase/chaperone Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae 20 d1sgva2 98.5 18 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 21 d1k8wa5 not modelled 98.5 20 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 22 c1sgvA_ not modelled 98.4 20 PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: structure of trna psi55 pseudouridine synthase (trub) 23 c1k8wA_ not modelled 98.0 21 PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna 24 c1ze2B_ not modelled 95.4 18 PDB header:lyase/rna Chain: B: PDB Molecule:trna pseudouridine synthase b; PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate 25 c2k6pA_ not modelled 32.2 11 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein hp_1423; PDBTitle: solution structure of hypothetical protein, hp1423 26 c2fo1A_ not modelled 19.2 16 PDB header:gene regulation/signalling protein/dna Chain: A: PDB Molecule:lin-12 and glp-1 phenotype protein 1, isoform b; PDBTitle: crystal structure of the csl-notch-mastermind ternary2 complex bound to dna 27 d2ysca1 not modelled 13.8 45 Fold:WW domain-like Superfamily:WW domain Family:WW domain 28 d1nkga1 not modelled 12.4 14 Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:Rhamnogalacturonase B, RhgB, middle domain 29 c3cjsA_ not modelled 12.0 50 PDB header:transferase/ribosomal protein Chain: A: PDB Molecule:ribosomal protein l11 methyltransferase; PDBTitle: minimal recognition complex between prma and ribosomal protein l11 30 d2ho2a1 not modelled 11.7 42 Fold:WW domain-like Superfamily:WW domain Family:WW domain 31 c2jmzA_ not modelled 11.6 14 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein mj0781; PDBTitle: solution structure of a klba intein precursor from2 methanococcus jannaschii 32 c1f5nA_ not modelled 11.4 13 PDB header:signaling protein Chain: A: PDB Molecule:interferon-induced guanylate-binding protein 1; PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp. 33 c3h7hA_ not modelled 11.2 16 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt4; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273) 34 d1zhva1 not modelled 9.4 31 Fold:Ferredoxin-like Superfamily:ACT-like Family:Atu0741-like 35 c1mzwB_ not modelled 8.3 23 PDB header:isomerase Chain: B: PDB Molecule:u4/u6 snrnp 60kda protein; PDBTitle: crystal structure of a u4/u6 snrnp complex between human2 spliceosomal cyclophilin h and a u4/u6-60k peptide 36 d2hq4a1 not modelled 7.9 33 Fold:PH1570-like Superfamily:PH1570-like Family:PH1570-like 37 c2voiB_ not modelled 7.8 27 PDB header:apoptosis Chain: B: PDB Molecule:bh3-interacting domain death agonist p13; PDBTitle: structure of mouse a1 bound to the bid bh3-domain 38 c2imzA_ not modelled 6.6 14 PDB header:hydrolase Chain: A: PDB Molecule:endonuclease pi-mtui; PDBTitle: crystal structure of mtu reca intein splicing domain 39 d1t6la1 not modelled 6.4 19 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 40 c2exuA_ not modelled 6.2 16 PDB header:transcription Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain 41 c1tlqA_ not modelled 6.1 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ypjq; PDBTitle: crystal structure of protein ypjq from bacillus subtilis, pfam duf64 42 d1tlqa_ not modelled 6.1 13 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 43 d1k4ta3 not modelled 5.4 13 Fold:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Superfamily:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Family:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 44 d1y9ia_ not modelled 5.3 13 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 45 c3bbnD_ not modelled 5.3 13 PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 46 c1vs3B_ not modelled 5.2 40 PDB header:isomerase Chain: B: PDB Molecule:trna pseudouridine synthase a; PDBTitle: crystal structure of the trna pseudouridine synthase trua from thermus2 thermophilus hb8 47 c2x5pA_ not modelled 5.2 18 PDB header:protein binding Chain: A: PDB Molecule:fibronectin binding protein; PDBTitle: crystal structure of the streptococcus pyogenes fibronectin binding2 protein fbab-b