Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	V	S	V	E	T	T	Q	G	L	G	R	R	V	T	I	T	I	A	A	D	S	I	E	T	A	V	K	S	E	L	V	N	V	A	K	K	V	R	I	D	G	F	R	K	G	K	V	P	M	N	I	V	A	Q	R	Y	G	A
Secondary structure
SS confidence
Disorder		?	?	?					?	?	?																															?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	V	R	Q	D	V	L	G	D	L	M	S	R	N	F	I	D	A	I	I	K	E	K	I	N	P	A	G	A	P	T	Y	V	P	G	E	Y	K	L	G	E	D	F	T	Y	S	V	E	F	E	V	Y	P	E	V	E	L	Q	G	L
Secondary structure
SS confidence
Disorder																																			?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	A	I	E	V	E	K	P	I	V	E	V	T	D	A	D	V	D	G	M	L	D	T	L	R	K	Q	Q	A	T	W	K	E	K	D	G	A	V	E	A	E	D	R	V	T	I	D	F	T	G	S	V	D	G	E	E	F	E	G	G
Secondary structure
SS confidence
Disorder																														?	?	?	?	?	?	?																								?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		K	A	S	D	F	V	L	A	M	G	Q	G	R	M	I	P	G	F	E	D	G	I	K	G	H	K	A	G	E	E	F	T	I	D	V	T	F	P	E	E	Y	H	A	E	N	L	K	G	K	A	A	K	F	A	I	N	L	K	K	V
Secondary structure
SS confidence
Disorder		?	?	?																																								?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		E	E	R	E	L	P	E	L	T	A	E	F	I	K	R	F	G	V	E	D	G	S	V	E	G	L	R	A	E	V	R	K	N	M	E	R	E	L	K	S	A	I	R	N	R	V	K	S	Q	A	I	E	G	L	V	K	A	N	D	I
Secondary structure
SS confidence
Disorder																					?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	V	P	A	A	L	I	D	S	E	I	D	V	L	R	R	Q	A	A	Q	R	F	G	G	N	E	K	Q	A	L	E	L	P	R	E	L	F	E	E	Q	A	K	R	R	V	V	V	G	L	L	L	G	E	V	I	R	T	N	E	L
Secondary structure
SS confidence
Disorder																							?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		K	A	D	E	E	R	V	K	G	L	I	E	E	M	A	S	A	Y	E	D	P	K	E	V	I	E	F	Y	S	K	N	K	E	L	M	D	N	M	R	N	V	A	L	E	E	Q	A	V	E	A	V	L	A	K	A	K	V	T	E	K
Secondary structure
SS confidence
Disorder				?															?	?	?	?									?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.
Sequence		E	T	T	F	N	E	L	M	N	Q	Q	A
Secondary structure
SS confidence
Disorder								?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1w26 chain B Region: 1 - 432 Aligned: 432 Modelled: 431 Confidence: 100.0% Identity: 97% PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins Phyre2 PDB 1t11 chain A Region: 1 - 378 Aligned: 375 Modelled: 378 Confidence: 100.0% Identity: 71% PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor Phyre2 PDB 3gty chain X Region: 1 - 422 Aligned: 404 Modelled: 422 Confidence: 100.0% Identity: 20% PDB header:chaperone/ribosomal protein Chain: X: PDB Molecule:trigger factor; PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone Phyre2 PDB 1w26 chain A domain 1 Region: 248 - 432 Aligned: 185 Modelled: 185 Confidence: 100.0% Identity: 97% Fold: Triger factor/SurA peptide-binding domain-like Superfamily: Triger factor/SurA peptide-binding domain-like Family: TF C-terminus Phyre2 PDB 1t11 chain A domain 2 Region: 1 - 129 Aligned: 129 Modelled: 129 Confidence: 100.0% Identity: 64% Fold: Ribosome binding domain-like Superfamily: Trigger factor ribosome-binding domain Family: Trigger factor ribosome-binding domain Phyre2 PDB 1w26 chain A domain 2 Region: 1 - 131 Aligned: 131 Modelled: 130 Confidence: 100.0% Identity: 98% Fold: Ribosome binding domain-like Superfamily: Trigger factor ribosome-binding domain Family: Trigger factor ribosome-binding domain Phyre2 PDB 1p9y chain A Region: 1 - 117 Aligned: 117 Modelled: 117 Confidence: 99.9% Identity: 99% Fold: Ribosome binding domain-like Superfamily: Trigger factor ribosome-binding domain Family: Trigger factor ribosome-binding domain Phyre2 PDB 1w26 chain A domain 3 Region: 132 - 247 Aligned: 116 Modelled: 116 Confidence: 99.9% Identity: 97% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 2nsa chain A Region: 259 - 416 Aligned: 158 Modelled: 158 Confidence: 99.9% Identity: 13% PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: structures of and interactions between domains of trigger factor from2 themotoga maritim Phyre2 PDB 1t11 chain A domain 3 Region: 136 - 247 Aligned: 112 Modelled: 112 Confidence: 99.9% Identity: 74% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 2nsc chain A Region: 1 - 113 Aligned: 109 Modelled: 113 Confidence: 99.8% Identity: 23% PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: structures of and interactions between domains of trigger factor from2 themotoga maritima Phyre2 PDB 2d3o chain 1 Region: 11 - 110 Aligned: 99 Modelled: 100 Confidence: 99.8% Identity: 23% PDB header:ribosome Chain: 1: PDB Molecule:trigger factor; PDBTitle: structure of ribosome binding domain of the trigger factor2 on the 50s ribosomal subunit from d. radiodurans Phyre2 PDB 1l1p chain A Region: 147 - 249 Aligned: 103 Modelled: 103 Confidence: 99.8% Identity: 99% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1t11 chain A domain 1 Region: 248 - 376 Aligned: 129 Modelled: 129 Confidence: 99.8% Identity: 75% Fold: Triger factor/SurA peptide-binding domain-like Superfamily: Triger factor/SurA peptide-binding domain-like Family: TF C-terminus Phyre2 PDB 1hxv chain A Region: 158 - 241 Aligned: 84 Modelled: 84 Confidence: 99.7% Identity: 33% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1hxv chain A Region: 158 - 241 Aligned: 84 Modelled: 84 Confidence: 99.7% Identity: 33% PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: ppiase domain of the mycoplasma genitalium trigger factor Phyre2 PDB 3prd chain A Region: 158 - 257 Aligned: 100 Modelled: 100 Confidence: 99.3% Identity: 25% PDB header:chaperone, isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 Phyre2 PDB 3pr9 chain A Region: 158 - 242 Aligned: 85 Modelled: 85 Confidence: 98.9% Identity: 29% PDB header:chaperone Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 Phyre2 PDB 3cgn chain A Region: 158 - 244 Aligned: 84 Modelled: 87 Confidence: 98.9% Identity: 35% PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of thermophilic slyd Phyre2 PDB 2kfw chain A Region: 158 - 248 Aligned: 91 Modelled: 91 Confidence: 98.8% Identity: 27% PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli Phyre2 1 c1w26B_ 2 c1t11A_ 3 c3gtyX_ 4 d1w26a1 5 d1t11a2 6 d1w26a2 7 d1p9ya_ 8 d1w26a3 9 c2nsaA_ 10 d1t11a3 11 c2nscA_ 12 c2d3o1_ 13 d1l1pa_ 14 d1t11a1 15 d1hxva_ 16 c1hxvA_ 17 c3prdA_ 18 c3pr9A_ 19 c3cgnA_ 20 c2kfwA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1w26B_ 100.0 97 PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins 2 c1t11A_ 100.0 71 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor 3 c3gtyX_ 100.0 20 PDB header:chaperone/ribosomal protein Chain: X: PDB Molecule:trigger factor; PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone 4 d1w26a1 100.0 97 Fold:Triger factor/SurA peptide-binding domain-like Superfamily:Triger factor/SurA peptide-binding domain-like Family:TF C-terminus 5 d1t11a2 100.0 64 Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain 6 d1w26a2 100.0 98 Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain 7 d1p9ya_ 99.9 99 Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain 8 d1w26a3 99.9 97 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 9 c2nsaA_ 99.9 13 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: structures of and interactions between domains of trigger factor from2 themotoga maritim 10 d1t11a3 99.9 74 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 11 c2nscA_ 99.8 23 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: structures of and interactions between domains of trigger factor from2 themotoga maritima 12 c2d3o1_ 99.8 23 PDB header:ribosome Chain: 1: PDB Molecule:trigger factor; PDBTitle: structure of ribosome binding domain of the trigger factor2 on the 50s ribosomal subunit from d. radiodurans 13 d1l1pa_ 99.8 99 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 14 d1t11a1 99.8 75 Fold:Triger factor/SurA peptide-binding domain-like Superfamily:Triger factor/SurA peptide-binding domain-like Family:TF C-terminus 15 d1hxva_ 99.7 33 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 16 c1hxvA_ 99.7 33 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: ppiase domain of the mycoplasma genitalium trigger factor 17 c3prdA_ 99.3 25 PDB header:chaperone, isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 18 c3pr9A_ 98.9 29 PDB header:chaperone Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 19 c3cgnA_ 98.9 35 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of thermophilic slyd 20 c2kfwA_ 98.8 27 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli 21 c2k8iA_ not modelled 98.8 27 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd 22 c2pbcD_ not modelled 98.7 28 PDB header:isomerase Chain: D: PDB Molecule:fk506-binding protein 2; PDBTitle: fk506-binding protein 2 23 d1ix5a_ not modelled 98.5 29 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 24 c2kr7A_ not modelled 98.5 20 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd; PDBTitle: solution structure of helicobacter pylori slyd 25 d1c9ha_ not modelled 98.3 22 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 26 c1q6uA_ not modelled 98.3 23 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase fkpa; PDBTitle: crystal structure of fkpa from escherichia coli 27 c2vcdA_ not modelled 98.3 25 PDB header:isomerase Chain: A: PDB Molecule:outer membrane protein mip; PDBTitle: solution structure of the fkbp-domain of legionella2 pneumophila mip in complex with rapamycin 28 d1fd9a_ not modelled 98.3 25 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 29 d1q6ha_ not modelled 98.3 23 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 30 d1kt0a2 not modelled 98.2 24 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 31 c2d9fA_ not modelled 98.2 16 PDB header:isomerase Chain: A: PDB Molecule:fk506-binding protein 8 variant; PDBTitle: solution structure of ruh-047, an fkbp domain from human2 cdna 32 d1jvwa_ not modelled 98.2 14 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 33 d2ppna1 not modelled 98.2 22 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 34 c2vn1A_ not modelled 98.2 20 PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidylprolyl isomerase; PDBTitle: crystal structure of the fk506-binding domain of plasmodium2 falciparum fkbp35 in complex with fk506 35 d1yata_ not modelled 98.2 28 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 36 c2lgoA_ not modelled 98.1 23 PDB header:isomerase Chain: A: PDB Molecule:fkbp; PDBTitle: solution nmr structure of a fkbp-type peptidyl-prolyl cis-trans2 isomerase from giardia lamblia, seattle structural genomics center3 for infectious disease target gilaa.00840.a 37 c3jxvA_ not modelled 98.1 17 PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidyl-prolyl isomerase; PDBTitle: crystal structure of the 3 fkbp domains of wheat fkbp73 38 c2ke0A_ not modelled 98.1 28 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of peptidyl-prolyl cis-trans isomerase from2 burkholderia pseudomallei 39 d1q1ca1 not modelled 98.1 23 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 40 c1q1cA_ not modelled 98.1 14 PDB header:isomerase Chain: A: PDB Molecule:fk506-binding protein 4; PDBTitle: crystal structure of n(1-260) of human fkbp52 41 c1rouA_ not modelled 98.1 23 PDB header:rotamase (isomerase) Chain: A: PDB Molecule:fkbp59-i; PDBTitle: structure of fkbp59-i, the n-terminal domain of a 59 kda2 fk506-binding protein, nmr, 22 structures 42 c2jwxA_ not modelled 98.1 17 PDB header:apoptosis, isomerase Chain: A: PDB Molecule:fk506-binding protein 8 variant; PDBTitle: solution structure of the n-terminal domain of human fkbp382 (fkbp38ntd) 43 d1kt0a3 not modelled 98.1 14 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 44 c3o5dB_ not modelled 98.0 14 PDB header:isomerase Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase fkbp5; PDBTitle: crystal structure of a fragment of fkbp51 comprising the fk1 and fk22 domains 45 d1kt1a3 not modelled 98.0 14 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 46 c3o5fA_ not modelled 98.0 23 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase fkbp5; PDBTitle: fk1 domain of fkbp51, crystal form vii 47 d1kt1a2 not modelled 98.0 19 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 48 d1r9ha_ not modelled 97.9 18 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 49 d1q1ca2 not modelled 97.9 14 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 50 d1pbka_ not modelled 97.9 23 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 51 c3oe2A_ not modelled 97.9 21 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: 1.6 a crystal structure of peptidyl-prolyl cis-trans isomerase ppiase2 from pseudomonas syringae pv. tomato str. dc3000 (pspto dc3000) 52 c1zxjB_ not modelled 97.8 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein mg377 homolog; PDBTitle: crystal structure of the hypthetical mycoplasma protein,2 mpn555 53 c1qz2B_ not modelled 97.7 9 PDB header:isomerase/chaperone Chain: B: PDB Molecule:fk506-binding protein 4; PDBTitle: crystal structure of fkbp52 c-terminal domain complex with2 the c-terminal peptide meevd of hsp90 54 c1kt0A_ not modelled 97.7 24 PDB header:isomerase Chain: A: PDB Molecule:51 kda fk506-binding protein; PDBTitle: structure of the large fkbp-like protein, fkbp51, involved in steroid2 receptor complexes 55 d1m5ya1 not modelled 97.7 12 Fold:Triger factor/SurA peptide-binding domain-like Superfamily:Triger factor/SurA peptide-binding domain-like Family:Porin chaperone SurA, peptide-binding domain 56 c3b7xA_ not modelled 97.6 18 PDB header:isomerase Chain: A: PDB Molecule:fk506-binding protein 6; PDBTitle: crystal structure of human fk506-binding protein 6 57 c2f4eB_ not modelled 97.5 14 PDB header:signaling protein Chain: B: PDB Molecule:atfkbp42; PDBTitle: n-terminal domain of fkbp42 from arabidopsis thaliana 58 d1u79a_ not modelled 96.9 19 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 59 c1m5yB_ not modelled 96.9 10 PDB header:isomerase, cell cycle Chain: B: PDB Molecule:survival protein sura; PDBTitle: crystallographic structure of sura, a molecular chaperone2 that facilitates outer membrane porin folding 60 c2if4A_ not modelled 96.3 12 PDB header:signaling protein Chain: A: PDB Molecule:atfkbp42; PDBTitle: crystal structure of a multi-domain immunophilin from2 arabidopsis thaliana 61 c2pv3B_ not modelled 93.5 14 PDB header:isomerase Chain: B: PDB Molecule:chaperone sura; PDBTitle: crystallographic structure of sura fragment lacking the second2 peptidyl-prolyl isomerase domain complexed with peptide nftlkfwdifrk 62 c3nrkA_ not modelled 91.0 14 PDB header:unknown function Chain: A: PDB Molecule:lic12922; PDBTitle: the crystal structure of the leptospiral hypothetical protein lic12922 63 c2p4vA_ not modelled 90.8 14 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution 64 c3htxA_ not modelled 89.4 17 PDB header:transferase/rna Chain: A: PDB Molecule:hen1; PDBTitle: crystal structure of small rna methyltransferase hen1 65 c3rgcB_ not modelled 88.7 7 PDB header:chaperone Chain: B: PDB Molecule:possible periplasmic protein; PDBTitle: the virulence factor peb4 and the periplasmic protein cj1289 are two2 structurally related sura-like chaperones in the human pathogen3 campylobacter jejuni 66 c1grjA_ not modelled 84.0 14 PDB header:transcription regulation Chain: A: PDB Molecule:grea protein; PDBTitle: grea transcript cleavage factor from escherichia coli 67 c3bmbB_ not modelled 79.7 17 PDB header:rna binding protein Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase; PDBTitle: crystal structure of a new rna polymerase interacting2 protein 68 c2etnA_ not modelled 74.3 14 PDB header:transcription Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor PDBTitle: crystal structure of thermus aquaticus gfh1 69 d2f23a2 not modelled 72.2 19 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 70 c3s6bA_ not modelled 66.4 16 PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase; PDBTitle: crystal structure of methionine aminopeptidase 1b from plasmodium2 falciparum, pf10_0150 71 d1jmxa1 not modelled 66.1 8 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 72 d2etna2 not modelled 65.6 17 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 73 c3rfwA_ not modelled 65.3 24 PDB header:chaperone Chain: A: PDB Molecule:cell-binding factor 2; PDBTitle: the virulence factor peb4 and the periplasmic protein cj1289 are two2 structurally-related sura-like chaperones in the human pathogen3 campylobacter jejuni 74 d1pbya1 not modelled 63.3 5 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 75 c2pn0D_ not modelled 55.4 18 PDB header:transcription Chain: D: PDB Molecule:prokaryotic transcription elongation factor PDBTitle: prokaryotic transcription elongation factor grea/greb from2 nitrosomonas europaea 76 c2wwbA_ not modelled 51.2 11 PDB header:ribosome Chain: A: PDB Molecule:protein transport protein sec61 subunit alpha isoform 1; PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the2 actively translating wheat germ 80s ribosome 77 c3j01A_ not modelled 48.9 17 PDB header:ribosome/ribosomal protein Chain: A: PDB Molecule:preprotein translocase secy subunit; PDBTitle: structure of the ribosome-secye complex in the membrane environment 78 c3dinF_ not modelled 43.6 19 PDB header:membrane protein, protein transport Chain: F: PDB Molecule:preprotein translocase subunit secy; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase 79 d1grja2 not modelled 43.3 15 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 80 c2wwaA_ not modelled 42.8 13 PDB header:ribosome Chain: A: PDB Molecule:sec sixty-one protein homolog; PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the2 yeast 80s ribosome 81 c3dl8H_ not modelled 42.6 24 PDB header:protein transport Chain: H: PDB Molecule:preprotein translocase subunit secy; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca 82 d1b8za_ not modelled 41.9 32 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 83 c2akiY_ not modelled 41.0 25 PDB header:protein transport Chain: Y: PDB Molecule:preprotein translocase secy subunit; PDBTitle: normal mode-based flexible fitted coordinates of a2 translocating secyeg protein-conducting channel into the3 cryo-em map of a secyeg-nascent chain-70s ribosome complex4 from e. coli 84 c3mp7A_ not modelled 35.8 38 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase subunit secy; PDBTitle: lateral opening of a translocon upon entry of protein suggests the2 mechanism of insertion into membranes 85 c2zqpY_ not modelled 33.8 17 PDB header:protein transport Chain: Y: PDB Molecule:preprotein translocase secy subunit; PDBTitle: crystal structure of secye translocon from thermus2 thermophilus 86 c2rhfA_ not modelled 31.0 19 PDB header:hydrolase Chain: A: PDB Molecule:dna helicase recq; PDBTitle: d. radiodurans recq hrdc domain 3 87 c1yw7A_ not modelled 30.8 16 PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase 2; PDBTitle: h-metap2 complexed with a444148 88 c2q8kA_ not modelled 30.2 26 PDB header:transcription Chain: A: PDB Molecule:proliferation-associated protein 2g4; PDBTitle: the crystal structure of ebp1 89 c3i18A_ not modelled 28.9 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo2051 protein; PDBTitle: crystal structure of the pdz domain of the sdrc-like protein2 (lmo2051) from listeria monocytogenes, northeast structural3 genomics consortium target lmr166b 90 c1b6aA_ not modelled 28.4 19 PDB header:angiogenesis inhibitor Chain: A: PDB Molecule:methionine aminopeptidase; PDBTitle: human methionine aminopeptidase 2 complexed with tnp-470 91 c2bpbB_ not modelled 27.8 19 PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella 92 c1yx3A_ not modelled 26.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dsrc; PDBTitle: nmr structure of allochromatium vinosum dsrc: northeast2 structural genomics consortium target op4 93 c2g6pA_ not modelled 25.9 19 PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase 1; PDBTitle: crystal structure of truncated (delta 1-89) human methionine2 aminopeptidase type 1 in complex with pyridyl pyrimidine derivative 94 c2gz5A_ not modelled 25.9 19 PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase 1; PDBTitle: human type 1 methionine aminopeptidase in complex with ovalicin at 1.12 ang 95 d1hmja_ not modelled 25.8 16 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 96 d1wuda1 not modelled 24.6 17 Fold:SAM domain-like Superfamily:HRDC-like Family:HRDC domain from helicases 97 d1qxya_ not modelled 23.6 19 Fold:Creatinase/aminopeptidase Superfamily:Creatinase/aminopeptidase Family:Creatinase/aminopeptidase 98 c2xzmO_ not modelled 23.0 11 PDB header:ribosome Chain: O: PDB Molecule:rps13e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 99 c2vcbA_ not modelled 22.7 12 PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylglucosaminidase; PDBTitle: family 89 glycoside hydrolase from clostridium perfringens2 in complex with pugnac

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0